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Select item 108724771.

Protein interaction network revealed by quantitative proteomic analysis links TFIIB to multiple aspects of the transcription cycle

Michael J. O’Brien, Athar Ansari

Biochim Biophys Acta Proteins Proteom. Author manuscript; available in PMC 2024 Feb 16.

Published in final edited form as: Biochim Biophys Acta Proteins Proteom. 2024 Jan 1; 1872(1): 140968. Published online 2023 Oct 19. doi: 10.1016/j.bbapap.2023.140968

PMCID:: PMC10872477

Abstract Article PDF–1.7M

Select item 107001382.

The social and structural architecture of the yeast protein interactome

André C. Michaelis, Andreas-David Brunner, Maximilian Zwiebel, Florian Meier, Maximilian T. Strauss, Isabell Bludau, Matthias Mann

Nature. 2023; 624(7990): 192–200. Published online 2023 Nov 15. doi: 10.1038/s41586-023-06739-5

PMCID:: PMC10700138

Abstract Article PDF–20M

Select item 105166423.

ISW1a modulates cohesin distribution in centromeric and pericentromeric regions

Ireneusz Litwin, Małgorzata Nowicka, Katarzyna Markowska, Ewa Maciaszczyk-Dziubińska, Paulina Tomaszewska, Robert Wysocki, Karol Kramarz

Nucleic Acids Res. 2023 Sep 22; 51(17): 9101–9121. Published online 2023 Jul 24. doi: 10.1093/nar/gkad612

PMCID:: PMC10516642

Abstract Article PDF–2.8M

Select item 99675084.

The APC/C Activator Cdh1p Plays a Role in Mitochondrial Metabolic Remodelling in Yeast

Ana Cláudia Leite, Maria Barbedo, Vítor Costa, Clara Pereira

Int J Mol Sci. 2023 Feb; 24(4): 4111. Published online 2023 Feb 18. doi: 10.3390/ijms24044111

PMCID:: PMC9967508

Abstract Article PDF–3.0M

Select item 98811765.

The S. cerevisiae m⁶A-reader Pho92 promotes timely meiotic recombination by controlling key methylated transcripts

Jérémy Scutenaire, Damien Plassard, Mélody Matelot, Tommaso Villa, Julie Zumsteg, Domenico Libri, Bertrand Séraphin

Nucleic Acids Res. 2023 Jan 25; 51(2): 517–535. Published online 2022 Aug 8. doi: 10.1093/nar/gkac640

PMCID:: PMC9881176

Abstract Article PDF–7.3M

Select item 97793226.

Manganese Stress Tolerance Depends on Yap1 and Stress-Activated MAP Kinases

Inés G. de Oya, Elena Jiménez-Gutiérrez, Hélène Gaillard, María Molina, Humberto Martín, Ralf Erik Wellinger

Int J Mol Sci. 2022 Dec; 23(24): 15706. Published online 2022 Dec 11. doi: 10.3390/ijms232415706

PMCID:: PMC9779322

Abstract Article PDF–2.5M

Select item 92098117.

New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources

Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry

Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224

PMCID:: PMC9209811

Abstract Article PDF–818K

Select item 85710638.

Systems-level effects of allosteric perturbations to a model molecular switch

Tina Perica, Christopher J. P. Mathy, Jiewei Xu, Gwendolyn M. Jang, Yang Zhang, Robyn Kaake, Noah Ollikainen, Hannes Braberg, Danielle L. Swaney, David G. Lambright, Mark J. S. Kelly, Nevan J. Krogan, Tanja Kortemme

Nature. Author manuscript; available in PMC 2022 May 1.

Published in final edited form as: Nature. 2021 Nov; 599(7883): 152–157. Published online 2021 Oct 13. doi: 10.1038/s41586-021-03982-6

PMCID:: PMC8571063

Abstract Article PDF–2.7M

Select item 84959459.

Fe-S coordination defects in the replicative DNA polymerase delta cause deleterious DNA replication in vivo and subsequent DNA damage in the yeast Saccharomyces cerevisiae

Roland Chanet, Dorothée Baïlle, Marie-Pierre Golinelli-Cohen, Sylvie Riquier, Olivier Guittet, Michel Lepoivre, Meng-Er Huang, Laurence Vernis

G3 (Bethesda) 2021 Jul; 11(7): jkab124. Published online 2021 May 1. doi: 10.1093/g3journal/jkab124

PMCID:: PMC8495945

Abstract Article PDF–732K

Select item 845007910.

Sequence-specific dynamics of DNA response elements and their flanking sites regulate the recognition by AP-1 transcription factors

Johanna Hörberg, Kevin Moreau, Markus J Tamás, Anna Reymer

Nucleic Acids Res. 2021 Sep 20; 49(16): 9280–9293. Published online 2021 Aug 13. doi: 10.1093/nar/gkab691

PMCID:: PMC8450079

Abstract Article PDF–4.1M

Select item 842120411.

Investigation of RNA metabolism through large-scale genetic interaction profiling in yeast

Laurence Decourty, Christophe Malabat, Emmanuel Frachon, Alain Jacquier, Cosmin Saveanu

Nucleic Acids Res. 2021 Sep 7; 49(15): 8535–8555. Published online 2021 Aug 6. doi: 10.1093/nar/gkab680

PMCID:: PMC8421204

Abstract Article PDF–2.9M

Select item 834475912.

A nuclear proteome localization screen reveals the exquisite specificity of Gpn2 in RNA polymerase biogenesis

Sean W. Minaker, Megan C. Kofoed, Philip Hieter, Peter C. Stirling

Cell Cycle. 2021; 20(14): 1361–1373. Published online 2021 Jun 28. doi: 10.1080/15384101.2021.1943879

PMCID:: PMC8344759

Abstract Article PDF–4.4M

Select item 819682713.

Exposure to the Methylselenol Precursor Dimethyldiselenide Induces a Reductive Endoplasmic Reticulum Stress in Saccharomyces cerevisiae

Marc Dauplais, Pierre Mahou, Pierre Plateau, Myriam Lazard

Int J Mol Sci. 2021 Jun; 22(11): 5467. Published online 2021 May 22. doi: 10.3390/ijms22115467

PMCID:: PMC8196827

Abstract Article PDF–2.2M

Select item 808842914.

Improving the design of an oxidative stress sensing biosensor in yeast

Louis C Dacquay, David R McMillen

FEMS Yeast Res. 2021 Jun; 21(4): foab025. Published online 2021 Apr 17. doi: 10.1093/femsyr/foab025

PMCID:: PMC8088429

Abstract Article PDF–2.6M

Select item 803524415.

The activity of yeast Apn2 AP endonuclease at uracil-derived AP sites is dependent on the major carbon source

Kasey Stokdyk, Alexandra Berroyer, Zacharia A. Grami, Nayun Kim

Curr Genet. Author manuscript; available in PMC 2021 Apr 10.

Published in final edited form as: Curr Genet. 2021 Apr; 67(2): 283–294. Published online 2021 Jan 1. doi: 10.1007/s00294-020-01141-4

PMCID:: PMC8035244

Abstract Article PDF–1.0M

Select item 797835716.

Indole-3-acetic acid is a physiological inhibitor of TORC1 in yeast

Raffaele Nicastro, Serena Raucci, Agnès H. Michel, Michael Stumpe, Guillermo Miguel Garcia Osuna, Malika Jaquenoud, Benoît Kornmann, Claudio De Virgilio

PLoS Genet. 2021 Mar; 17(3): e1009414. Published online 2021 Mar 9. doi: 10.1371/journal.pgen.1009414