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Items: 1 to 20 of 33

1.
Next-generation large-scale binary protein interaction network for Drosophila melanogaster
Hong-Wen Tang, Kerstin Spirohn, Yanhui Hu, Tong Hao, István A. Kovács, Yue Gao, Richard Binari, Donghui Yang-Zhou, Kenneth H. Wan, Joel S. Bader, Dawit Balcha, Wenting Bian, Benjamin W. Booth, Atina G. Coté, Steffi de Rouck, Alice Desbuleux, Kah Yong Goh, Dae-Kyum Kim, Jennifer J. Knapp, Wen Xing Lee, Irma Lemmens, Cathleen Li, Mian Li, Roujia Li, Hyobin Julianne Lim, Yifang Liu, Katja Luck, Dylan Markey, Carl Pollis, Sudharshan Rangarajan, Jonathan Rodiger, Sadie Schlabach, Yun Shen, Dayag Sheykhkarimli, Bridget TeeKing, Frederick P. Roth, Jan Tavernier, Michael A. Calderwood, David E. Hill, Susan E. Celniker, Marc Vidal, Norbert Perrimon, Stephanie E. Mohr
Nat Commun. 2023; 14: 2162. Published online 2023 Apr 15. doi: 10.1038/s41467-023-37876-0
PMCID:
PMC10105736
AbstractArticlePDF–3.2M
2.
Systematic identification and characterization of repressive domains in Drosophila transcription factors
Loni Klaus, Bernardo P de Almeida, Anna Vlasova, Filip Nemčko, Alexander Schleiffer, Katharina Bergauer, Lorena Hofbauer, Martina Rath, Alexander Stark
EMBO J. 2023 Feb; 42(3): e112100. Published online 2022 Dec 22. doi: 10.15252/embj.2022112100
PMCID:
PMC9890238
AbstractArticlePDF–1.2M
3.
Delineating Purinergic Signaling in Drosophila
Cinzia Volonté, Francesca Alberti, Giuseppe Vitale, Francesco Liguori
Int J Mol Sci. 2022 Dec; 23(23): 15196. Published online 2022 Dec 2. doi: 10.3390/ijms232315196
PMCID:
PMC9738970
AbstractArticlePDF–1.5M
4.
Orally acquired cyclic dinucleotides drive dSTING-dependent antiviral immunity in enterocytes
Elisha Segrist, Mark Dittmar, Beth Gold, Sara Cherry
Cell Rep. Author manuscript; available in PMC 2022 Jan 20.
Published in final edited form as: Cell Rep. 2021 Dec 28; 37(13): 110150. doi: 10.1016/j.celrep.2021.110150
PMCID:
PMC8771144
AbstractArticlePDF–1.7M
5.
Adenosine Receptor and Its Downstream Targets, Mod(mdg4) and Hsp70, Work as a Signaling Pathway Modulating Cytotoxic Damage in Drosophila
Yu-Hsien Lin, Houda Ouns Maaroufi, Lucie Kucerova, Lenka Rouhova, Tomas Filip, Michal Zurovec
Front Cell Dev Biol. 2021; 9: 651367. Published online 2021 Mar 12. doi: 10.3389/fcell.2021.651367
PMCID:
PMC7994771
AbstractArticlePDF–4.4M
6.
CRISPR-based modular assembly of a UAS-cDNA/ORF plasmid library for more than 5500 Drosophila genes conserved in humans
Ping Wei, Wen Xue, Yun Zhao, Guang Ning, Jiwu Wang
Genome Res. 2020 Jan; 30(1): 95–106. doi: 10.1101/gr.250811.119
PMCID:
PMC6961578
AbstractArticlePDF–3.6M
7.
Equilibrative Nucleoside Transporter 2 Regulates Associative Learning and Synaptic Function in Drosophila
David Knight, Philip J. Harvey, Konstantin G. Iliadi, Markus K. Klose, Natalia Iliadi, Eva Dolezelova, Milton P. Charlton, Michal Zurovec, Gabrielle L. Boulianne
J Neurosci. 2010 Apr 7; 30(14): 5047–5057. doi: 10.1523/JNEUROSCI.6241-09.2010
PMCID:
PMC6632785
AbstractArticlePDF–1.3M
8.
Epithelial cells release adenosine to promote local TNF production in response to polarity disruption
Ingrid Poernbacher, Jean-Paul Vincent
Nat Commun. 2018; 9: 4675. Published online 2018 Nov 7. doi: 10.1038/s41467-018-07114-z
PMCID:
PMC6220285
AbstractArticlePDF–1.3M
9.
The proton-coupled monocarboxylate transporter Hermes is necessary for autophagy during cell death
Panagiotis D. Velentzas, Lejie Zhang, Gautam Das, Tsun-Kai Chang, Charles Nelson, William R. Kobertz, Eric H. Baehrecke
Dev Cell. Author manuscript; available in PMC 2019 Nov 5.
Published in final edited form as: Dev Cell. 2018 Nov 5; 47(3): 281–293.e4. Published online 2018 Oct 11. doi: 10.1016/j.devcel.2018.09.015
PMCID:
PMC6219939
AbstractArticlePDF–5.0M
10.
Landscape and evolution of tissue-specific alternative polyadenylation across Drosophila species
Piero Sanfilippo, Jiayu Wen, Eric C. Lai
Genome Biol. 2017; 18: 229. Published online 2017 Nov 30. doi: 10.1186/s13059-017-1358-0
PMCID:
PMC5707805
AbstractArticlePDF–3.2M
11.
Transcription elongation rate has a tissue-specific impact on alternative cleavage and polyadenylation in Drosophila melanogaster
Xiaochuan Liu, Jaime Freitas, Dinghai Zheng, Marta S. Oliveira, Mainul Hoque, Torcato Martins, Telmo Henriques, Bin Tian, Alexandra Moreira
RNA. 2017 Dec; 23(12): 1807–1816. doi: 10.1261/rna.062661.117
PMCID:
PMC5689002
AbstractArticlePDF–4.0M
12.
Gene Model Annotations for Drosophila melanogaster: The Rule-Benders
Madeline A. Crosby, L. Sian Gramates, Gilberto dos Santos, Beverley B. Matthews, Susan E. St. Pierre, Pinglei Zhou, Andrew J. Schroeder, Kathleen Falls, David B. Emmert, Susan M. Russo, William M. Gelbart, the FlyBase Consortium
G3 (Bethesda) 2015 Aug; 5(8): 1737–1749. Published online 2015 Jun 24. doi: 10.1534/g3.115.018937
PMCID:
PMC4528330
AbstractArticlePDF–2.2M
13.
Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data
Beverley B. Matthews, Gilberto dos Santos, Madeline A. Crosby, David B. Emmert, Susan E. St. Pierre, L. Sian Gramates, Pinglei Zhou, Andrew J. Schroeder, Kathleen Falls, Victor Strelets, Susan M. Russo, William M. Gelbart, the FlyBase Consortium
G3 (Bethesda) 2015 Aug; 5(8): 1721–1736. Published online 2015 Jun 24. doi: 10.1534/g3.115.018929
PMCID:
PMC4528329
AbstractArticlePDF–4.9M
14.
Interaction between differentiating cell and niche-derived signals in hematopoietic progenitor maintenance
Bama Charan Mondal, Tina Mukherjee, Lolitika Mandal, Cory J. Evans, Sergey A. Sinenko, Julian A. Martinez-Agosto, Utpal Banerjee
Cell. Author manuscript; available in PMC 2015 Apr 20.
Published in final edited form as: Cell. 2011 Dec 23; 147(7): 1589–1600. doi: 10.1016/j.cell.2011.11.041
PMCID:
PMC4403793
AbstractArticlePDF–1.0M
15.
The Release 6 reference sequence of the Drosophila melanogaster genome
Roger A. Hoskins, Joseph W. Carlson, Kenneth H. Wan, Soo Park, Ivonne Mendez, Samuel E. Galle, Benjamin W. Booth, Barret D. Pfeiffer, Reed A. George, Robert Svirskas, Martin Krzywinski, Jacqueline Schein, Maria Carmela Accardo, Elisabetta Damia, Giovanni Messina, María Méndez-Lago, Beatriz de Pablos, Olga V. Demakova, Evgeniya N. Andreyeva, Lidiya V. Boldyreva, Marco Marra, A. Bernardo Carvalho, Patrizio Dimitri, Alfredo Villasante, Igor F. Zhimulev, Gerald M. Rubin, Gary H. Karpen, Susan E. Celniker
Genome Res. 2015 Mar; 25(3): 445–458. doi: 10.1101/gr.185579.114
PMCID:
PMC4352887
AbstractArticlePDF–1022K
16.
Phylostratigraphic Bias Creates Spurious Patterns of Genome Evolution
Bryan A. Moyers, Jianzhi Zhang
Mol Biol Evol. 2015 Jan 1; 32(1): 258–267. Published online 2014 Oct 13. doi: 10.1093/molbev/msu286
Correction in:
Mol Biol Evol. 2016 Nov; 33(11): 3031.
PMCID:
PMC4271527
AbstractArticlePDF–618K
17.
dREAM co-operates with insulator-binding proteins and regulates expression at divergently paired genes
Michael Korenjak, Eunjeong Kwon, Robert T. Morris, Endre Anderssen, Arnaud Amzallag, Sridhar Ramaswamy, Nicholas J. Dyson
Nucleic Acids Res. 2014 Aug 18; 42(14): 8939–8953. Published online 2014 Jul 22. doi: 10.1093/nar/gku609
PMCID:
PMC4132727
AbstractArticlePDF–4.0M
18.
High-fidelity promoter profiling reveals widespread alternative promoter usage and transposon-driven developmental gene expression
Philippe Batut, Alexander Dobin, Charles Plessy, Piero Carninci, Thomas R. Gingeras
Genome Res. 2013 Jan; 23(1): 169–180. doi: 10.1101/gr.139618.112
PMCID:
PMC3530677
AbstractArticlePDF–1.5M
19.
The Many Landscapes of Recombination in Drosophila melanogaster
Josep M. Comeron, Ramesh Ratnappan, Samuel Bailin
PLoS Genet. 2012 Oct; 8(10): e1002905. Published online 2012 Oct 11. doi: 10.1371/journal.pgen.1002905
PMCID:
PMC3469467
AbstractArticlePDF–1.6M
20.
A Protein Complex Network of Drosophila melanogaster
K. G. Guruharsha, J. -F. Rual, B. Zhai, J. Mintseris, P. Vaidya, N. Vaidya, C. Beekman, C. Wong, D. Y. Rhee, O. Cenaj, E. McKillip, S. Shah, M. Stapleton, K. H. Wan, C. Yu, B. Parsa, J. W. Carlson, X. Chen, B. Kapadia, K. VijayRaghavan, S. P. Gygi, S. E. Celniker, R. A. Obar, S. Artavanis-Tsakonas
Cell. Author manuscript; available in PMC 2012 Oct 28.
Published in final edited form as: Cell. 2011 Oct 28; 147(3): 690–703. doi: 10.1016/j.cell.2011.08.047
PMCID:
PMC3319048
AbstractArticlePDF–3.2M

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