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Select item 110734331.

The crystal structure of Atg18 reveals a new binding site for Atg2 in Saccharomyces cerevisiae

Yuqing Lei, Dan Tang, Ga Liao, Liangting Xu, Shiyan Liu, Qianqian Chen, Chunxia Li, Jinsong Duan, Kunjie Wang, Jiawei Wang, Bo Sun, Zhonghan Li, Lunzhi Dai, Wei Cheng, Shiqian Qi, Kefeng Lu

Cell Mol Life Sci. 2021 Mar; 78(5): 2131–2143. Published online 2020 Aug 18. doi: 10.1007/s00018-020-03621-9

PMCID:: PMC11073433

Abstract Article PDF–2.6M

Select item 108724772.

Protein interaction network revealed by quantitative proteomic analysis links TFIIB to multiple aspects of the transcription cycle

Michael J. O’Brien, Athar Ansari

Biochim Biophys Acta Proteins Proteom. Author manuscript; available in PMC 2024 Feb 16.

Published in final edited form as: Biochim Biophys Acta Proteins Proteom. 2024 Jan 1; 1872(1): 140968. Published online 2023 Oct 19. doi: 10.1016/j.bbapap.2023.140968

PMCID:: PMC10872477

Abstract Article PDF–1.7M

Select item 107005463.

Atg18 oligomer organization in assembled tubes and on lipid membrane scaffolds

Daniel Mann, Simon A. Fromm, Antonio Martinez-Sanchez, Navin Gopaldass, Ramona Choy, Andreas Mayer, Carsten Sachse

Nat Commun. 2023; 14: 8086. Published online 2023 Dec 6. doi: 10.1038/s41467-023-43460-3

PMCID:: PMC10700546

Abstract Article PDF–8.5M

Select item 107001384.

The social and structural architecture of the yeast protein interactome

André C. Michaelis, Andreas-David Brunner, Maximilian Zwiebel, Florian Meier, Maximilian T. Strauss, Isabell Bludau, Matthias Mann

Nature. 2023; 624(7990): 192–200. Published online 2023 Nov 15. doi: 10.1038/s41586-023-06739-5

PMCID:: PMC10700138

Abstract Article PDF–20M

Select item 102410025.

Atg9 interactions via its transmembrane domains are required for phagophore expansion during autophagy

Sabrina Chumpen Ramirez, Rubén Gómez-Sánchez, Pauline Verlhac, Ralph Hardenberg, Eleonora Margheritis, Katia Cosentino, Fulvio Reggiori, Christian Ungermann

Autophagy. 2023; 19(5): 1459–1478. Published online 2022 Nov 10. doi: 10.1080/15548627.2022.2136340

PMCID:: PMC10241002

Abstract Article PDF–3.5M

Select item 98099426.

Vacuole fragmentation depends on a novel Atg18-containing retromer-complex

Lisa Marquardt, Matthew Taylor, Florian Kramer, Kerstin Schmitt, Gerhard H. Braus, Oliver Valerius, Michael Thumm

Autophagy. 2023; 19(1): 278–295. Published online 2022 May 15. doi: 10.1080/15548627.2022.2072656

PMCID:: PMC9809942

Abstract Article PDF–5.1M

Select item 92098117.

New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources

Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry

Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224

PMCID:: PMC9209811

Abstract Article PDF–818K

Select item 91086108.

CROP: a retromer‐PROPPIN complex mediating membrane fission in the endo‐lysosomal system

Thibault Courtellemont, Maria Giovanna De Leo, Navin Gopaldass, Andreas Mayer

EMBO J. 2022 May; 41(10): e109646. Published online 2022 Apr 25. doi: 10.15252/embj.2021109646

PMCID:: PMC9108610

Abstract Article PDF–8.1M

Select item 86938609.

Multilayered regulation of autophagy by the Atg1 kinase orchestrates spatial and temporal control of autophagosome formation

Anne Schreiber, Ben C. Collins, Colin Davis, Radoslav I. Enchev, Angie Sedra, Rocco D’Antuono, Ruedi Aebersold, Matthias Peter

Mol Cell. 2021 Dec 16; 81(24): 5066–5081.e10. doi: 10.1016/j.molcel.2021.10.024

PMCID:: PMC8693860

Abstract Article

Select item 868275110.

A conserved ATG2 binding site in WIPI4 and yeast Hsv2 is disrupted by mutations causing β-propeller protein-associated neurodegeneration

Miranda Bueno-Arribas, Irene Blanca, Celia Cruz-Cuevas, Ricardo Escalante, María-Angeles Navas, Olivier Vincent

Hum Mol Genet. 2022 Jan 1; 31(1): 111–121. Published online 2021 Aug 9. doi: 10.1093/hmg/ddab225

PMCID:: PMC8682751

Abstract Article PDF–1.0M

Select item 772147511.

A Selective Autophagy Pathway for Phase-Separated Endocytic Protein Deposits

Florian Wilfling, Chia-Wei Lee, Philipp S. Erdmann, Yumei Zheng, Dawafuti Sherpa, Stefan Jentsch, Boris Pfander, Brenda A. Schulman, Wolfgang Baumeister

Mol Cell. 2020 Dec 3; 80(5): 764–778.e7. doi: 10.1016/j.molcel.2020.10.030

PMCID:: PMC7721475

Abstract Article

Select item 771875112.

Comprehensive Synthetic Genetic Array Analysis of Alleles That Interact with Mutation of the Saccharomyces cerevisiae RecQ Helicases Hrq1 and Sgs1

Elsbeth Sanders, Phoebe A. Nguyen, Cody M. Rogers, Matthew L. Bochman

G3 (Bethesda) 2020 Dec; 10(12): 4359–4368. Published online 2020 Oct 28. doi: 10.1534/g3.120.401709

PMCID:: PMC7718751

Abstract Article PDF–1.2M

Select item 761077813.

Reconstitution of autophagosome nucleation defines Atg9 vesicles as seeds for membrane formation

Justyna Sawa-Makarska, Verena Baumann, Nicolas Coudevylle, Sören von Bülow, Veronika Nogellova, Christine Abert, Martina Schuschnig, Martin Graef, Gerhard Hummer, Sascha Martens

Science. Author manuscript; available in PMC 2021 May 13.

Published in final edited form as: Science. 2020 Sep 4; 369(6508): eaaz7714. Published online 2020 Sep 4. doi: 10.1126/science.aaz7714

PMCID:: PMC7610778

Abstract Article PDF–1.9M

Select item 743157514.

Methylglyoxal inhibits nuclear division through alterations in vacuolar morphology and accumulation of Atg18 on the vacuolar membrane in Saccharomyces cerevisiae

Wataru Nomura, Miho Aoki, Yoshiharu Inoue

Sci Rep. 2020; 10: 13887. Published online 2020 Aug 17. doi: 10.1038/s41598-020-70802-8

PMCID:: PMC7431575

Abstract Article PDF–1.5M

Select item 714070715.

Heme, A Metabolic Sensor, Directly Regulates the Activity of the KDM4 Histone Demethylase Family and Their Interactions with Partner Proteins

Purna Chaitanya Konduri, Tianyuan Wang, Narges Salamat, Li Zhang

Cells. 2020 Mar; 9(3): 773. Published online 2020 Mar 22. doi: 10.3390/cells9030773

PMCID:: PMC7140707

Abstract Article PDF–3.2M

Select item 713822216.

DeepPhagy: a deep learning framework for quantitatively measuring autophagy activity in Saccharomyces cerevisiae

Ying Zhang, Yubin Xie, Wenzhong Liu, Wankun Deng, Di Peng, Chenwei Wang, Haodong Xu, Chen Ruan, Yongjie Deng, Yaping Guo, Chenjun Lu, Cong Yi, Jian Ren, Yu Xue

Autophagy. 2020; 16(4): 626–640. Published online 2019 Jun 20. doi: 10.1080/15548627.2019.1632622

PMCID:: PMC7138222

Abstract Article PDF–8.0M

Select item 621571317.

Systematic Analysis of Complex Genetic Interactions

Elena Kuzmin, Benjamin VanderSluis, Wen Wang, Guihong Tan, Raamesh Deshpande, Yiqun Chen, Matej Usaj, Attila Balint, Mojca Mattiazzi Usaj, Jolanda van Leeuwen, Elizabeth N. Koch, Carles Pons, Andrius J. Dagilis, Michael Pryszlak, Jason Zi Yang Wang, Julia Hanchard, Margot Riggi, Kaicong Xu, Hamed Heydari, Bryan-Joseph San Luis, Ermira Shuteriqi, Hongwei Zhu, Nydia Van Dyk, Sara Sharifpoor, Michael Costanzo, Robbie Loewith, Amy Caudy, Daniel Bolnick, Grant W. Brown, Brenda J. Andrews, Charles Boone, Chad L. Myers

Science. Author manuscript; available in PMC 2018 Nov 4.

Published in final edited form as: Science. 2018 Apr 20; 360(6386): eaao1729. doi: 10.1126/science.aao1729

PMCID:: PMC6215713

Abstract Article PDF–1.9M

Select item 618716918.

The Atg2-Atg18 complex tethers pre-autophagosomal membranes to the endoplasmic reticulum for autophagosome formation

Tetsuya Kotani, Hiromi Kirisako, Michiko Koizumi, Yoshinori Ohsumi, Hitoshi Nakatogawa

Proc Natl Acad Sci U S A. 2018 Oct 9; 115(41): 10363–10368. Published online 2018 Sep 25. doi: 10.1073/pnas.1806727115

PMCID:: PMC6187169

Abstract Article PDF–1.2M

Select item 616824719.

A novel in vitro assay reveals SNARE topology and the role of Ykt6 in autophagosome fusion with vacuoles

Jieqiong Gao, Fulvio Reggiori, Christian Ungermann

J Cell Biol. 2018 Oct 1; 217(10): 3670–3682. doi: 10.1083/jcb.201804039

PMCID:: PMC6168247

Abstract Article PDF–2.0M

Select item 608093120.

Atg9 establishes Atg2-dependent contact sites between the endoplasmic reticulum and phagophores

Rubén Gómez-Sánchez, Jaqueline Rose, Rodrigo Guimarães, Muriel Mari, Daniel Papinski, Ester Rieter, Willie J. Geerts, Ralph Hardenberg, Claudine Kraft, Christian Ungermann, Fulvio Reggiori

J Cell Biol. 2018 Aug 6; 217(8): 2743–2763. doi: 10.1083/jcb.201710116

PMCID:: PMC6080931

Abstract Article PDF–3.1M

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