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Select item 112755181.

RNA polymerase I mutant affects ribosomal RNA processing and ribosomal DNA stability

Christophe Normand, Christophe Dez, Lise Dauban, Sophie Queille, Sarah Danché, Sarra Abderrahmane, Frederic Beckouet, Olivier Gadal

RNA Biol. 2024; 21(1): 1–16. Published online 2024 Jul 24. doi: 10.1080/15476286.2024.2381910

PMCID:: PMC11275518

Abstract Article PDF–6.0M

Select item 107001382.

The social and structural architecture of the yeast protein interactome

André C. Michaelis, Andreas-David Brunner, Maximilian Zwiebel, Florian Meier, Maximilian T. Strauss, Isabell Bludau, Matthias Mann

Nature. 2023; 624(7990): 192–200. Published online 2023 Nov 15. doi: 10.1038/s41586-023-06739-5

PMCID:: PMC10700138

Abstract Article PDF–20M

Select item 95787003.

Age-dependent aggregation of ribosomal RNA-binding proteins links deterioration in chromatin stability with challenges to proteostasis

Julie Paxman, Zhen Zhou, Richard O'Laughlin, Yuting Liu, Yang Li, Wanying Tian, Hetian Su, Yanfei Jiang, Shayna E Holness, Elizabeth Stasiowski, Lev S Tsimring, Lorraine Pillus, Jeff Hasty, Nan Hao

eLife. 2022; 11: e75978. Published online 2022 Oct 4. doi: 10.7554/eLife.75978

PMCID:: PMC9578700

Abstract Article PDF–4.3M

Select item 92098114.

New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources

Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry

Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224

PMCID:: PMC9209811

Abstract Article PDF–818K

Select item 70673315.

Nucleolus as an oxidative stress sensor in the yeast Saccharomyces cerevisiae

Anna Lewinska, Maciej Wnuk, Agnieszka Grzelak, Grzegorz Bartosz

Redox Rep. 2010; 15(2): 87–96. Published online 2013 Jul 19. doi: 10.1179/174329210X12650506623366

PMCID:: PMC7067331

Summary PDF–861K

Select item 65896926.

Compositional reorganization of the nucleolus in budding yeast mitosis

Philipp Girke, Wolfgang Seufert

Mol Biol Cell. 2019 Mar 1; 30(5): 591–606. doi: 10.1091/mbc.E18-08-0524

PMCID:: PMC6589692

Abstract Article PDF–4.8M

Select item 63539107.

The path of pre-ribosomes through the nuclear pore complex revealed by electron tomography

Franck Delavoie, Vanessa Soldan, Dana Rinaldi, Jean-Yves Dauxois, Pierre-Emmanuel Gleizes

Nat Commun. 2019; 10: 497. Published online 2019 Jan 30. doi: 10.1038/s41467-019-08342-7

PMCID:: PMC6353910

Abstract Article PDF–5.8M

Select item 62845898.

Identification of factors that promote biogenesis of tRNA_CGA^Ser

Fu Xu, Yang Zhou, Anders S. Byström, Marcus J.O. Johansson

RNA Biol. 2018; 15(10): 1286–1294. Published online 2018 Oct 18. doi: 10.1080/15476286.2018.1526539

PMCID:: PMC6284589

Abstract Article PDF–1.4M

Select item 57653599.

Genome-Wide Mapping of Decay Factor–mRNA Interactions in Yeast Identifies Nutrient-Responsive Transcripts as Targets of the Deadenylase Ccr4

Jason E. Miller, Liye Zhang, Haoyang Jiang, Yunfei Li, B. Franklin Pugh, Joseph C. Reese

G3 (Bethesda) 2018 Jan; 8(1): 315–330. Published online 2017 Nov 20. doi: 10.1534/g3.117.300415

PMCID:: PMC5765359

Abstract Article PDF–2.2M

Select item 566188510.

A global interaction network maps a wiring diagram of cellular function

Michael Costanzo, Benjamin VanderSluis, Elizabeth N. Koch, Anastasia Baryshnikova, Carles Pons, Guihong Tan, Wen Wang, Matej Usaj, Julia Hanchard, Susan D. Lee, Vicent Pelechano, Erin B. Styles, Maximilian Billmann, Jolanda van Leeuwen, Nydia van Dyk, Zhen-Yuan Lin, Elena Kuzmin, Justin Nelson, Jeff S. Piotrowski, Tharan Srikumar, Sondra Bahr, Yiqun Chen, Raamesh Deshpande, Christoph F. Kurat, Sheena C. Li, Zhijian Li, Mojca Mattiazzi Usaj, Hiroki Okada, Natasha Pascoe, Bryan-Joseph San Luis, Sara Sharifpoor, Emira Shuteriqi, Scott W. Simpkins, Jamie Snider, Harsha Garadi Suresh, Yizhao Tan, Hongwei Zhu, Noel Malod-Dognin, Vuk Janjic, Natasa Przulj, Olga G. Troyanskaya, Igor Stagljar, Tian Xia, Yoshikazu Ohya, Anne-Claude Gingras, Brian Raught, Michael Boutros, Lars M. Steinmetz, Claire L. Moore, Adam P. Rosebrock, Amy A. Caudy, Chad L. Myers, Brenda Andrews, Charles Boone

Science. Author manuscript; available in PMC 2017 Oct 30.

Published in final edited form as: Science. 2016 Sep 23; 353(6306): aaf1420. doi: 10.1126/science.aaf1420

PMCID:: PMC5661885

Abstract Article PDF–2.6M

Select item 559979611.

Structural insights into transcription initiation by yeast RNA polymerase I

Yashar Sadian, Lucas Tafur, Jan Kosinski, Arjen J Jakobi, Rene Wetzel, Katarzyna Buczak, Wim JH Hagen, Martin Beck, Carsten Sachse, Christoph W Müller

EMBO J. 2017 Sep 15; 36(18): 2698–2709. Published online 2017 Jul 24. doi: 10.15252/embj.201796958

PMCID:: PMC5599796

Abstract Article PDF–2.6M

Select item 556293712.

Exploring Genetic Suppression Interactions on a Global Scale

Jolanda van Leeuwen, Carles Pons, Joseph C. Mellor, Takafumi N. Yamaguchi, Helena Friesen, John Koschwanez, Mojca Mattiazzi Ušaj, Maria Pechlaner, Mehmet Takar, Matej Ušaj, Benjamin VanderSluis, Kerry Andrusiak, Pritpal Bansal, Anastasia Baryshnikova, Claire Boone, Jessica Cao, Atina Cote, Marinella Gebbia, Gene Horecka, Ira Horecka, Elena Kuzmin, Nicole Legro, Wendy Liang, Natascha van Lieshout, Margaret McNee, Bryan-Joseph San Luis, Fatemeh Shaeri, Ermira Shuteriqi, Song Sun, Lu Yang, Ji-Young Youn, Michael Yuen, Michael Costanzo, Anne-Claude Gingras, Patrick Aloy, Chris Oostenbrink, Andrew Murray, Todd R. Graham, Chad L. Myers, Brenda J. Andrews, Frederick P. Roth, Charles Boone

Science. Author manuscript; available in PMC 2017 Aug 19.

Published in final edited form as: Science. 2016 Nov 4; 354(6312): aag0839. doi: 10.1126/science.aag0839

PMCID:: PMC5562937

Abstract Article PDF–2.5M

Select item 536226513.

The dynamic assembly of distinct RNA polymerase I complexes modulates rDNA transcription

Eva Torreira, Jaime Alegrio Louro, Irene Pazos, Noelia González-Polo, David Gil-Carton, Ana Garcia Duran, Sébastien Tosi, Oriol Gallego, Olga Calvo, Carlos Fernández-Tornero

eLife. 2017; 6: e20832. Published online 2017 Mar 6. doi: 10.7554/eLife.20832

PMCID:: PMC5362265

Abstract Article PDF–5.3M

Select item 520434814.

A novel translational control mechanism involving RNA structures within coding sequences

Jennifer Jungfleisch, Danny D. Nedialkova, Ivan Dotu, Katherine E. Sloan, Neus Martinez-Bosch, Lukas Brüning, Emanuele Raineri, Pilar Navarro, Markus T. Bohnsack, Sebastian A. Leidel, Juana Díez

Genome Res. 2017 Jan; 27(1): 95–106. doi: 10.1101/gr.209015.116

Correction in:: Genome Res. 2017 Apr; 27(4): 663.

PMCID:: PMC5204348

Abstract Article PDF–1.3M

Select item 502647315.

A conserved quality-control pathway that mediates degradation of unassembled ribosomal proteins

Min-Kyung Sung, Tanya R Porras-Yakushi, Justin M Reitsma, Ferdinand M Huber, Michael J Sweredoski, André Hoelz, Sonja Hess, Raymond J Deshaies

eLife. 2016; 5: e19105. Published online 2016 Aug 23. doi: 10.7554/eLife.19105

PMCID:: PMC5026473

Abstract Article PDF–4.2M

Select item 494717416.

Structure of the initiation-competent RNA polymerase I and its implication for transcription

Michael Pilsl, Corinne Crucifix, Gabor Papai, Ferdinand Krupp, Robert Steinbauer, Joachim Griesenbeck, Philipp Milkereit, Herbert Tschochner, Patrick Schultz

Nat Commun. 2016; 7: 12126. Published online 2016 Jul 15. doi: 10.1038/ncomms12126