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Items: 1 to 20 of 21

1.
A systematic proximity ligation approach to studying protein‐substrate specificity identifies the substrate spectrum of the Ssh1 translocon
Nir Cohen, Naama Aviram, Maya Schuldiner
EMBO J. 2023 Jun; 42(11): e113385. Published online 2023 Apr 19. doi: 10.15252/embj.2022113385
PMCID:
PMC10233368
AbstractArticlePDF–1.2M
2.
New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources
Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry
Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224
PMCID:
PMC9209811
AbstractArticlePDF–818K
3.
Peroxisomal ATP Uptake Is Provided by Two Adenine Nucleotide Transporters and the ABCD Transporters
Carlo W. T. van Roermund, Lodewijk IJlst, Nicole Linka, Ronald J. A. Wanders, Hans R. Waterham
Front Cell Dev Biol. 2021; 9: 788921. Published online 2022 Jan 19. doi: 10.3389/fcell.2021.788921
PMCID:
PMC8807639
AbstractArticlePDF–1.1M
4.
Characterization of proteome dynamics in oleate reveals a novel peroxisome targeting receptor
Eden Yifrach, Silvia G. Chuartzman, Noa Dahan, Shiran Maskit, Lior Zada, Uri Weill, Ido Yofe, Tsviya Olender, Maya Schuldiner, Einat Zalckvar
J Cell Sci. Author manuscript; available in PMC 2018 Dec 2.
Published in final edited form as: J Cell Sci. 2016 Nov 1; 129(21): 4067–4075. Published online 2016 Sep 23. doi: 10.1242/jcs.195255
PMCID:
PMC6275125
AbstractArticlePDF–1.6M
5.
Genome-Wide Mapping of Decay Factor–mRNA Interactions in Yeast Identifies Nutrient-Responsive Transcripts as Targets of the Deadenylase Ccr4
Jason E. Miller, Liye Zhang, Haoyang Jiang, Yunfei Li, B. Franklin Pugh, Joseph C. Reese
G3 (Bethesda) 2018 Jan; 8(1): 315–330. Published online 2017 Nov 20. doi: 10.1534/g3.117.300415
PMCID:
PMC5765359
AbstractArticlePDF–2.2M
6.
A global interaction network maps a wiring diagram of cellular function
Michael Costanzo, Benjamin VanderSluis, Elizabeth N. Koch, Anastasia Baryshnikova, Carles Pons, Guihong Tan, Wen Wang, Matej Usaj, Julia Hanchard, Susan D. Lee, Vicent Pelechano, Erin B. Styles, Maximilian Billmann, Jolanda van Leeuwen, Nydia van Dyk, Zhen-Yuan Lin, Elena Kuzmin, Justin Nelson, Jeff S. Piotrowski, Tharan Srikumar, Sondra Bahr, Yiqun Chen, Raamesh Deshpande, Christoph F. Kurat, Sheena C. Li, Zhijian Li, Mojca Mattiazzi Usaj, Hiroki Okada, Natasha Pascoe, Bryan-Joseph San Luis, Sara Sharifpoor, Emira Shuteriqi, Scott W. Simpkins, Jamie Snider, Harsha Garadi Suresh, Yizhao Tan, Hongwei Zhu, Noel Malod-Dognin, Vuk Janjic, Natasa Przulj, Olga G. Troyanskaya, Igor Stagljar, Tian Xia, Yoshikazu Ohya, Anne-Claude Gingras, Brian Raught, Michael Boutros, Lars M. Steinmetz, Claire L. Moore, Adam P. Rosebrock, Amy A. Caudy, Chad L. Myers, Brenda Andrews, Charles Boone
Science. Author manuscript; available in PMC 2017 Oct 30.
Published in final edited form as: Science. 2016 Sep 23; 353(6306): aaf1420. doi: 10.1126/science.aaf1420
PMCID:
PMC5661885
AbstractArticlePDF–2.6M
7.
The Genetic Landscape of a Cell
Michael Costanzo, Anastasia Baryshnikova, Jeremy Bellay, Yungil Kim, Eric D. Spear, Carolyn S. Sevier, Huiming Ding, Judice L.Y. Koh, Kiana Toufighi, Sara Mostafavi, Jeany Prinz, Robert P. St. Onge, Benjamin VanderSluis, Taras Makhnevych, Franco J. Vizeacoumar, Solmaz Alizadeh, Sondra Bahr, Renee L. Brost, Yiqun Chen, Murat Cokol, Raamesh Deshpande, Zhijian Li, Zhen-Yuan Lin, Wendy Liang, Michaela Marback, Jadine Paw, Bryan-Joseph San Luis, Ermira Shuteriqi, Amy Hin Yan Tong, Nydia van Dyk, Iain M. Wallace, Joseph A. Whitney, Matthew T. Weirauch, Guoqing Zhong, Hongwei Zhu, Walid A. Houry, Michael Brudno, Sasan Ragibizadeh, Balázs Papp, Csaba Pál, Frederick P. Roth, Guri Giaever, Corey Nislow, Olga G. Troyanskaya, Howard Bussey, Gary D. Bader, Anne-Claude Gingras, Quaid D. Morris, Philip M. Kim, Chris A. Kaiser, Chad L. Myers, Brenda J. Andrews, Charles Boone
Science. Author manuscript; available in PMC 2017 Sep 15.
Published in final edited form as: Science. 2010 Jan 22; 327(5964): 425–431. doi: 10.1126/science.1180823
PMCID:
PMC5600254
AbstractArticlePDF–2.4M
8.
A conserved quality-control pathway that mediates degradation of unassembled ribosomal proteins
Min-Kyung Sung, Tanya R Porras-Yakushi, Justin M Reitsma, Ferdinand M Huber, Michael J Sweredoski, André Hoelz, Sonja Hess, Raymond J Deshaies
eLife. 2016; 5: e19105. Published online 2016 Aug 23. doi: 10.7554/eLife.19105
PMCID:
PMC5026473
AbstractArticlePDF–4.2M
9.
Involvement of the Carboxyl-Terminal Region of the Yeast Peroxisomal Half ABC Transporter Pxa2p in Its Interaction with Pxa1p and in Transporter Function
Cheng-Yi Chuang, Ling-Yun Chen, Ru-Huei Fu, Shih-Ming Chen, Ming-Hua Ho, Jie-Mau Huang, Chia-Chi Hsu, Chien-Cheng Wang, Meng-Shian Chen, Rong-Tzong Tsai
PLoS One. 2014; 9(8): e104892. Published online 2014 Aug 13. doi: 10.1371/journal.pone.0104892
PMCID:
PMC4132065
AbstractArticlePDF–5.0M
10.
Mapping the functional yeast ABC transporter interactome
Jamie Snider, Asad Hanif, Mid Eum Lee, Ke Jin, Analyn R. Yu, Chris Graham, Matthew Chuk, Dunja Damjanovic, Marta Wierzbicka, Priscilla Tang, Dina Balderes, Victoria Wong, Matthew Jessulat, Katelyn D. Darowski, Bryan-Joseph San Luis, Igor Shevelev, Stephen L Sturley, Charles Boone, Jack F. Greenblatt, Zhaolei Zhang, Christian M. Paumi, Mohan Babu, Hay-Oak Park, Susan Michaelis, Igor Stagljar
Nat Chem Biol. Author manuscript; available in PMC 2014 Mar 1.
Published in final edited form as: Nat Chem Biol. 2013 Sep; 9(9): 565–572. Published online 2013 Jul 7. doi: 10.1038/nchembio.1293
PMCID:
PMC3835492
AbstractArticlePDF–1.2M
11.
Unligated Okazaki Fragments Induce PCNA Ubiquitination and a Requirement for Rad59-Dependent Replication Fork Progression
Hai Dang Nguyen, Jordan Becker, Yee Mon Thu, Michael Costanzo, Elizabeth N. Koch, Stephanie Smith, Kyungjae Myung, Chad L. Myers, Charles Boone, Anja-Katrin Bielinsky
PLoS One. 2013; 8(6): e66379. Published online 2013 Jun 18. doi: 10.1371/journal.pone.0066379
PMCID:
PMC3688925
AbstractArticlePDF–5.9M
12.
Peroxisomal Fatty Acid Uptake Mechanism in Saccharomyces cerevisiae
Carlo W. T. van Roermund, Lodewijk IJlst, Wiktor Majczak, Hans R. Waterham, Hendrik Folkerts, Ronald J. A. Wanders, Klaas J. Hellingwerf
J Biol Chem. 2012 Jun 8; 287(24): 20144–20153. Published online 2012 Apr 9. doi: 10.1074/jbc.M111.332833
PMCID:
PMC3370197
AbstractArticlePDF–1.1M
13.
An integrated approach to characterize genetic interaction networks in yeast metabolism
Balázs Szappanos, Károly Kovács, Béla Szamecz, Frantisek Honti, Michael Costanzo, Anastasia Baryshnikova, Gabriel Gelius-Dietrich, Martin J. Lercher, Márk Jelasity, Chad L. Myers, Brenda J. Andrews, Charles Boone, Stephen G. Oliver, Csaba Pál, Balázs Papp
Nat Genet. Author manuscript; available in PMC 2012 Jan 1.
Published in final edited form as: Nat Genet. 2011 Jul; 43(7): 656–662. Published online 2011 May 29. doi: 10.1038/ng.846
PMCID:
PMC3125439
AbstractArticlePDF–2.5M
14.
The Complete Spectrum of Yeast Chromosome Instability Genes Identifies Candidate CIN Cancer Genes and Functional Roles for ASTRA Complex Components
Peter C. Stirling, Michelle S. Bloom, Tejomayee Solanki-Patil, Stephanie Smith, Payal Sipahimalani, Zhijian Li, Megan Kofoed, Shay Ben-Aroya, Kyungjae Myung, Philip Hieter
PLoS Genet. 2011 Apr; 7(4): e1002057. Published online 2011 Apr 28. doi: 10.1371/journal.pgen.1002057
PMCID:
PMC3084213
AbstractArticlePDF–710K
15.
The Arabidopsis Peroxisomal ABC Transporter, Comatose, Complements the Saccharomyces cerevisiae pxa1 pxa2Δ Mutant for Metabolism of Long-chain Fatty Acids and Exhibits Fatty Acyl-CoA-stimulated ATPase Activity
Yvonne Nyathi, Carine De Marcos Lousa, Carlo W. van Roermund, Ronald J. A. Wanders, Barbara Johnson, Stephen A. Baldwin, Frederica L. Theodoulou, Alison Baker
J Biol Chem. 2010 Sep 24; 285(39): 29892–29902. Published online 2010 Jul 21. doi: 10.1074/jbc.M110.151225
PMCID:
PMC2943281
AbstractArticlePDF–1.1M
16.
Purification of Nuclear Poly(A)-binding Protein Nab2 Reveals Association with the Yeast Transcriptome and a Messenger Ribonucleoprotein Core Structure
Julien Batisse, Claire Batisse, Aidan Budd, Bettina Böttcher, Ed Hurt
J Biol Chem. 2009 Dec 11; 284(50): 34911–34917. Published online 2009 Oct 19. doi: 10.1074/jbc.M109.062034
PMCID:
PMC2787353
AbstractArticlePDF–3.8M
17.
Annotating novel genes by integrating synthetic lethals and genomic information
Daniel Schöner, Markus Kalisch, Christian Leisner, Lukas Meier, Marc Sohrmann, Mahamadou Faty, Yves Barral, Matthias Peter, Wilhelm Gruissem, Peter Bühlmann
BMC Syst Biol. 2008; 2: 3. Published online 2008 Jan 14. doi: 10.1186/1752-0509-2-3
PMCID:
PMC2258006
AbstractArticlePDF–523K
18.
Large-scale identification of yeast integral membrane protein interactions
John P. Miller, Russell S. Lo, Asa Ben-Hur, Cynthia Desmarais, Igor Stagljar, William Stafford Noble, Stanley Fields
Proc Natl Acad Sci U S A. 2005 Aug 23; 102(34): 12123–12128. Published online 2005 Aug 10. doi: 10.1073/pnas.0505482102
PMCID:
PMC1189342
AbstractArticlePDF–653K
19.
The ABC transporter proteins Pat1 and Pat2 are required for import of long-chain fatty acids into peroxisomes of Saccharomyces cerevisiae.
E H Hettema, C W van Roermund, B Distel, M van den Berg, C Vilela, C Rodrigues-Pousada, R J Wanders, H F Tabak
EMBO J. 1996 Aug 1; 15(15): 3813–3822.
PMCID:
PMC452064
SummaryPage BrowsePDF–2.2M
20.
PXA1, a possible Saccharomyces cerevisiae ortholog of the human adrenoleukodystrophy gene.
N Shani, P A Watkins, D Valle
Proc Natl Acad Sci U S A. 1995 Jun 20; 92(13): 6012–6016. doi: 10.1073/pnas.92.13.6012
PMCID:
PMC41632
SummaryPage BrowsePDF–1.6M

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