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Select item 108724771.

Protein interaction network revealed by quantitative proteomic analysis links TFIIB to multiple aspects of the transcription cycle

Michael J. O’Brien, Athar Ansari

Biochim Biophys Acta Proteins Proteom. Author manuscript; available in PMC 2024 Feb 16.

Published in final edited form as: Biochim Biophys Acta Proteins Proteom. 2024 Jan 1; 1872(1): 140968. Published online 2023 Oct 19. doi: 10.1016/j.bbapap.2023.140968

PMCID:: PMC10872477

Abstract Article PDF–1.7M

Select item 107988582.

Fast-evolving cofactors regulate the role of HEATR5 complexes in intra-Golgi trafficking

Lucas J. Marmorale, Huan Jin, Thomas G. Reidy, Brandon Palomino-Alonso, Christopher J. Zysnarski, Fatima Jordan-Javed, Sagar Lahiri, Mara C. Duncan

J Cell Biol. 2024 Mar 4; 223(3): e202309047. Published online 2024 Jan 19. doi: 10.1083/jcb.202309047

PMCID:: PMC10798858

Abstract Article PDF–6.4M

Select item 107001383.

The social and structural architecture of the yeast protein interactome

André C. Michaelis, Andreas-David Brunner, Maximilian Zwiebel, Florian Meier, Maximilian T. Strauss, Isabell Bludau, Matthias Mann

Nature. 2023; 624(7990): 192–200. Published online 2023 Nov 15. doi: 10.1038/s41586-023-06739-5

PMCID:: PMC10700138

Abstract Article PDF–20M

Select item 102922104.

Nuclear pore complexes mediate subtelomeric gene silencing by regulating PCNA levels on chromatin

Sanjeev Kumar Choudhry, Maxwell L. Neal, Song Li, Arti T. Navare, Trevor Van Eeuwen, Richard W. Wozniak, Fred D. Mast, Michael P. Rout, John D. Aitchison

J Cell Biol. 2023 Sep 4; 222(9): e202207060. Published online 2023 Jun 26. doi: 10.1083/jcb.202207060

PMCID:: PMC10292210

Abstract Article PDF–5.9M

Select item 102517995.

Distinct Interaction Modes for the Eukaryotic RNA Polymerase Alpha-like Subunits

Alana E. Belkevich, Haleigh G. Pascual, Aula M. Fakhouri, David G. Ball, Bruce A. Knutson

Mol Cell Biol. 2023; 43(6): 269–282. Published online 2023 May 24. doi: 10.1080/10985549.2023.2210023

PMCID:: PMC10251799

Abstract Article PDF–1.6M

Select item 96733526.

A proteomic screen of Ty1 integrase partners identifies the protein kinase CK2 as a regulator of Ty1 retrotransposition

Anastasia Barkova, Indranil Adhya, Christine Conesa, Amna Asif-Laidin, Amandine Bonnet, Elise Rabut, Carine Chagneau, Pascale Lesage, Joël Acker

Mob DNA. 2022; 13: 26. Published online 2022 Nov 18. doi: 10.1186/s13100-022-00284-0

PMCID:: PMC9673352

Abstract Article PDF–2.6M

Select item 92098117.

New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources

Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry

Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224

PMCID:: PMC9209811

Abstract Article PDF–818K

Select item 85710638.

Systems-level effects of allosteric perturbations to a model molecular switch

Tina Perica, Christopher J. P. Mathy, Jiewei Xu, Gwendolyn M. Jang, Yang Zhang, Robyn Kaake, Noah Ollikainen, Hannes Braberg, Danielle L. Swaney, David G. Lambright, Mark J. S. Kelly, Nevan J. Krogan, Tanja Kortemme

Nature. Author manuscript; available in PMC 2022 May 1.

Published in final edited form as: Nature. 2021 Nov; 599(7883): 152–157. Published online 2021 Oct 13. doi: 10.1038/s41586-021-03982-6

PMCID:: PMC8571063

Abstract Article PDF–2.7M

Select item 84929619.

Spt4 facilitates the movement of RNA polymerase II through the +2 nucleosomal barrier

Ülkü Uzun, Thomas Brown, Harry Fischl, Andrew Angel, Jane Mellor

Cell Rep. 2021 Sep 28; 36(13): 109755. Published online 2021 Sep 29. doi: 10.1016/j.celrep.2021.109755

PMCID:: PMC8492961

Abstract Article

Select item 809411710.

SUMOylation stabilizes sister kinetochore biorientation to allow timely anaphase

Xue Bessie Su, Menglu Wang, Claudia Schaffner, Olga O. Nerusheva, Dean Clift, Christos Spanos, David A. Kelly, Michael Tatham, Andreas Wallek, Yehui Wu, Juri Rappsilber, A. Arockia Jeyaprakash, Zuzana Storchova, Ronald T. Hay, Adèle L. Marston

J Cell Biol. 2021 Jul 5; 220(7): e202005130. Published online 2021 Apr 30. doi: 10.1083/jcb.202005130

PMCID:: PMC8094117

Abstract Article PDF–8.1M

Select item 770807411.

The expression of Rpb10, a small subunit common to RNA polymerases, is modulated by the R3H domain-containing Rbs1 protein and the Upf1 helicase

Małgorzata Cieśla, Tomasz W Turowski, Marcin Nowotny, David Tollervey, Magdalena Boguta

Nucleic Acids Res. 2020 Dec 2; 48(21): 12252–12268. Published online 2020 Nov 24. doi: 10.1093/nar/gkaa1069

PMCID:: PMC7708074

Abstract Article PDF–7.2M

Select item 691648012.

The ribosome assembly factor Nop53 controls association of the RNA exosome with pre-60S particles in yeast

Leidy Paola P. Cepeda, Felipe F. M. Bagatelli, Renata M. Santos, Marlon D. M. Santos, Fabio C. S. Nogueira, Carla C. Oliveira

J Biol Chem. 2019 Dec 13; 294(50): 19365–19380. Published online 2019 Oct 29. doi: 10.1074/jbc.RA119.010193

PMCID:: PMC6916480

Abstract Article PDF–5.0M

Select item 664889513.

Tsr4 and Nap1, two novel members of the ribosomal protein chaperOME

Ingrid Rössler, Julia Embacher, Benjamin Pillet, Guillaume Murat, Laura Liesinger, Jutta Hafner, Julia Judith Unterluggauer, Ruth Birner-Gruenberger, Dieter Kressler, Brigitte Pertschy

Nucleic Acids Res. 2019 Jul 26; 47(13): 6984–7002. Published online 2019 May 7. doi: 10.1093/nar/gkz317

PMCID:: PMC6648895

Abstract Article PDF–14M

Select item 629489414.

NETSeq reveals heterogeneous nucleotide incorporation by RNA polymerase I

Andrew M. Clarke, Krysta L. Engel, Keith E. Giles, Chad M. Petit, David A. Schneider

Proc Natl Acad Sci U S A. 2018 Dec 11; 115(50): E11633–E11641. Published online 2018 Nov 27. doi: 10.1073/pnas.1809421115

PMCID:: PMC6294894

Abstract Article PDF–1.9M

Select item 625161315.

Treacher Collins syndrome mutations in Saccharomyces cerevisiae destabilize RNA polymerase I and III complex integrity

Nancy Walker-Kopp, Ashleigh J Jackobel, Gianno N Pannafino, Paola A Morocho, Xia Xu, Bruce A Knutson

Hum Mol Genet. 2017 Nov 1; 26(21): 4290–4300. Published online 2017 Aug 14. doi: 10.1093/hmg/ddx317

PMCID:: PMC6251613

Abstract Article PDF–834K

Select item 621627716.

A role for Mog1 in H2Bub1 and H3K4me3 regulation affecting RNAPII transcription and mRNA export

Paula Oliete‐Calvo, Joan Serrano‐Quílez, Carme Nuño‐Cabanes, María E Pérez‐Martínez, Luis M Soares, Bernhard Dichtl, Stephen Buratowski, José E Pérez‐Ortín, Susana Rodríguez‐Navarro

EMBO Rep. 2018 Nov; 19(11): e45992. Published online 2018 Sep 24. doi: 10.15252/embr.201845992

PMCID:: PMC6216277

Abstract Article PDF–1.7M

Select item 612869217.

Defective RNA polymerase III is negatively regulated by the SUMO-Ubiquitin-Cdc48 pathway

Zheng Wang, Catherine Wu, Aaron Aslanian, John R Yates, III, Tony Hunter

eLife. 2018; 7: e35447. Published online 2018 Sep 7. doi: 10.7554/eLife.35447

PMCID:: PMC6128692

Abstract Article PDF–6.9M

Select item 608162118.

Yeast RNA polymerase II subunit RPB11 is related to a subunit shared by RNA polymerase I and III

Nancy A. Woychik, Keith McKune, William S. Lane, Richard A. Young

Gene Expr. 1993; 3(1): 77–82. Published online 2018 Aug 8.

PMCID:: PMC6081621

Abstract Article PDF–1.6M

Select item 594018019.

Network inference reveals novel connections in pathways regulating growth and defense in the yeast salt response

Matthew E. MacGilvray, Evgenia Shishkova, Deborah Chasman, Michael Place, Anthony Gitter, Joshua J. Coon, Audrey P. Gasch

PLoS Comput Biol. 2018 May; 13(5): e1006088. Published online 2018 May 8. doi: 10.1371/journal.pcbi.1006088

PMCID:: PMC5940180

Abstract Article PDF–3.0M

Select item 592252820.

Global analysis of genetic circuitry and adaptive mechanisms enabling resistance to the azole antifungal drugs

Harley O’Connor Mount, Nicole M. Revie, Robert T. Todd, Kaitlin Anstett, Cathy Collins, Michael Costanzo, Charles Boone, Nicole Robbins, Anna Selmecki, Leah E. Cowen

PLoS Genet. 2018 Apr; 14(4): e1007319. Published online 2018 Apr 27. doi: 10.1371/journal.pgen.1007319