PMC Links for GEO Profiles (Select 17889661) - PMC

Anton Golovnin, Larisa Melnikova, Valentin Babosha, Galina V. Pokholkova, Ivan Slovohotov, Anastasia Umnova, Oksana Maksimenko, Igor F. Zhimulev, Pavel Georgiev

Int J Mol Sci. 2023 Nov; 24(21): 15917. Published online 2023 Nov 2. doi: 10.3390/ijms242115917

PMCID:: PMC10648081

Abstract Article PDF–5.5M

Select item 105904264.

3D chromatin interactions involving Drosophila insulators are infrequent but preferential and arise before TADs and transcription

Olivier Messina, Flavien Raynal, Julian Gurgo, Jean-Bernard Fiche, Vera Pancaldi, Marcelo Nollmann

Nat Commun. 2023; 14: 6678. Published online 2023 Oct 21. doi: 10.1038/s41467-023-42485-y

PMCID:: PMC10590426

Abstract Article PDF–3.6M

Select item 101838195.

Functionally distinct promoter classes initiate transcription via different mechanisms reflected in focused versus dispersed initiation patterns

Leonid Serebreni, Lisa‐Marie Pleyer, Vanja Haberle, Oliver Hendy, Anna Vlasova, Vincent Loubiere, Filip Nemčko, Katharina Bergauer, Elisabeth Roitinger, Karl Mechtler, Alexander Stark

EMBO J. 2023 May; 42(10): e113519. Published online 2023 Apr 4. doi: 10.15252/embj.2023113519

PMCID:: PMC10183819

Abstract Article PDF–2.7M

Select item 101057366.

Next-generation large-scale binary protein interaction network for Drosophila melanogaster

Hong-Wen Tang, Kerstin Spirohn, Yanhui Hu, Tong Hao, István A. Kovács, Yue Gao, Richard Binari, Donghui Yang-Zhou, Kenneth H. Wan, Joel S. Bader, Dawit Balcha, Wenting Bian, Benjamin W. Booth, Atina G. Coté, Steffi de Rouck, Alice Desbuleux, Kah Yong Goh, Dae-Kyum Kim, Jennifer J. Knapp, Wen Xing Lee, Irma Lemmens, Cathleen Li, Mian Li, Roujia Li, Hyobin Julianne Lim, Yifang Liu, Katja Luck, Dylan Markey, Carl Pollis, Sudharshan Rangarajan, Jonathan Rodiger, Sadie Schlabach, Yun Shen, Dayag Sheykhkarimli, Bridget TeeKing, Frederick P. Roth, Jan Tavernier, Michael A. Calderwood, David E. Hill, Susan E. Celniker, Marc Vidal, Norbert Perrimon, Stephanie E. Mohr

Nat Commun. 2023; 14: 2162. Published online 2023 Apr 15. doi: 10.1038/s41467-023-37876-0

PMCID:: PMC10105736

Abstract Article PDF–3.2M

Select item 100402177.

Nucleoporins facilitate ORC loading onto chromatin

Logan Richards, Christopher L. Lord, Mary Lauren Benton, John A. Capra, Jared T. Nordman

Cell Rep. Author manuscript; available in PMC 2023 Mar 26.

Published in final edited form as: Cell Rep. 2022 Nov 8; 41(6): 111590. doi: 10.1016/j.celrep.2022.111590

PMCID:: PMC10040217

Abstract Article PDF–1.8M

Select item 99385908.

Proximity labeling reveals a new in vivo network of interactors for the histone demethylase KDM5

Matanel Yheskel, Simone Sidoli, Julie Secombe

Epigenetics Chromatin. 2023; 16: 8. Published online 2023 Feb 18. doi: 10.1186/s13072-023-00481-y

PMCID:: PMC9938590

Abstract Article PDF–4.8M

Select item 99178899.

Mechanisms of Interaction between Enhancers and Promoters in Three Drosophila Model Systems

Olga Kyrchanova, Vladimir Sokolov, Pavel Georgiev

Int J Mol Sci. 2023 Feb; 24(3): 2855. Published online 2023 Feb 2. doi: 10.3390/ijms24032855

PMCID:: PMC9917889

Abstract Article PDF–2.2M

Select item 956326710.

The Green Valley of Drosophila melanogaster Constitutive Heterochromatin: Protein-Coding Genes Involved in Cell Division Control

Giovanni Messina, Yuri Prozzillo, Greta Bizzochi, Renè Massimiliano Marsano, Patrizio Dimitri

Cells. 2022 Oct; 11(19): 3058. Published online 2022 Sep 29. doi: 10.3390/cells11193058

PMCID:: PMC9563267

Abstract Article PDF–1.2M

Select item 920301311.

The phospho-docking protein 14-3-3 regulates microtubule-associated proteins in oocytes including the chromosomal passenger Borealin

Charlotte Repton, C. Fiona Cullen, Mariana F. A. Costa, Christos Spanos, Juri Rappsilber, Hiroyuki Ohkura

PLoS Genet. 2022 Jun; 18(6): e1009995. Published online 2022 Jun 6. doi: 10.1371/journal.pgen.1009995

PMCID:: PMC9203013

Abstract Article PDF–2.5M

Select item 910630212.

Essential role of Cp190 in physical and regulatory boundary formation

Anjali Kaushal, Julien Dorier, Bihan Wang, Giriram Mohana, Michael Taschner, Pascal Cousin, Patrice Waridel, Christian Iseli, Anastasiia Semenova, Simon Restrepo, Nicolas Guex, Erez Lieberman Aiden, Maria Cristina Gambetta

Sci Adv. 2022 May; 8(19): eabl8834. Published online 2022 May 13. doi: 10.1126/sciadv.abl8834

PMCID:: PMC9106302

Abstract Article PDF–8.3M

Select item 899735913.

The role of insulators and transcription in 3D chromatin organization of flies

Keerthi T. Chathoth, Liudmila A. Mikheeva, Gilles Crevel, Jareth C. Wolfe, Ioni Hunter, Saskia Beckett-Doyle, Sue Cotterill, Hongsheng Dai, Andrew Harrison, Nicolae Radu Zabet

Genome Res. 2022 Apr; 32(4): 682–698. doi: 10.1101/gr.275809.121

PMCID:: PMC8997359

Abstract Article PDF–13M

Select item 881529714.

GAGA factor: a multifunctional pioneering chromatin protein

Darya Chetverina, Maksim Erokhin, Paul Schedl

Cell Mol Life Sci. 2021 May; 78(9): 4125–4141. Published online 2021 Feb 2. doi: 10.1007/s00018-021-03776-z

PMCID:: PMC8815297

Abstract Article PDF–3.5M

Select item 878304315.

Msl3 promotes germline stem cell differentiation in female Drosophila

Alicia McCarthy, Kahini Sarkar, Elliot T. Martin, Maitreyi Upadhyay, Seoyeon Jang, Nathan D. Williams, Paolo E. Forni, Michael Buszczak, Prashanth Rangan

Development. 2022 Jan 1; 149(1): dev199625. Published online 2022 Jan 4. doi: 10.1242/dev.199625

PMCID:: PMC8783043

Abstract Article

Select item 870031616.

When Down Is Up: Heterochromatin, Nuclear Organization and X Upregulation

Reem Makki, Victoria H. Meller

Cells. 2021 Dec; 10(12): 3416. Published online 2021 Dec 4. doi: 10.3390/cells10123416

PMCID:: PMC8700316

Abstract Article PDF–988K

Select item 866448617.

Genome-wide phenotypic RNAi screen in the Drosophila wing: phenotypic description of functional classes

Ana López-Varea, Patricia Vega-Cuesta, Ana Ruiz-Gómez, Cristina M Ostalé, Cristina Molnar, Covadonga F Hevia, Mercedes Martín, Maria F Organista, Jesus de Celis, Joaquín Culí, Nuria Esteban, Jose F de Celis

G3 (Bethesda) 2021 Dec; 11(12): jkab349. Published online 2021 Oct 2. doi: 10.1093/g3journal/jkab349

PMCID:: PMC8664486

Abstract Article PDF–3.1M

Select item 861606018.

The Organization of Pericentromeric Heterochromatin in Polytene Chromosome 3 of the Drosophilamelanogaster Line with the Rif1¹; SuUR^ES Su(var)3-9⁰⁶ Mutations Suppressing Underreplication

Tatyana Zykova, Mariya Maltseva, Fedor Goncharov, Lidia Boldyreva, Galina Pokholkova, Tatyana Kolesnikova, Igor Zhimulev

Cells. 2021 Nov; 10(11): 2809. Published online 2021 Oct 20. doi: 10.3390/cells10112809

PMCID:: PMC8616060

Abstract Article PDF–5.8M

Select item 857404219.

An explainable artificial intelligence approach for decoding the enhancer histone modifications code and identification of novel enhancers in Drosophila

Jareth C. Wolfe, Liudmila A. Mikheeva, Hani Hagras, Nicolae Radu Zabet

Genome Biol. 2021; 22: 308. Published online 2021 Nov 8. doi: 10.1186/s13059-021-02532-7

PMCID:: PMC8574042

Abstract Article PDF–2.4M

Select item 822829320.

Multi-Scale Organization of the Drosophila melanogaster Genome

Samantha C. Peterson, Kaylah B. Samuelson, Stacey L. Hanlon

Genes (Basel) 2021 Jun; 12(6): 817. Published online 2021 May 27. doi: 10.3390/genes12060817

PMCID:: PMC8228293

Abstract Article PDF–1.0M

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