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Items: 1 to 20 of 213

1.
The DEAD-box ATPase Dbp10/DDX54 initiates peptidyl transferase center formation during 60S ribosome biogenesis
Victor E. Cruz, Christine S. Weirich, Nagesh Peddada, Jan P. Erzberger
Nat Commun. 2024; 15: 3296. Published online 2024 Apr 17. doi: 10.1038/s41467-024-47616-7
PMCID:
PMC11024185
AbstractArticlePDF–7.4M
2.
Protein interaction network revealed by quantitative proteomic analysis links TFIIB to multiple aspects of the transcription cycle
Michael J. O’Brien, Athar Ansari
Biochim Biophys Acta Proteins Proteom. Author manuscript; available in PMC 2024 Feb 16.
Published in final edited form as: Biochim Biophys Acta Proteins Proteom. 2024 Jan 1; 1872(1): 140968. Published online 2023 Oct 19. doi: 10.1016/j.bbapap.2023.140968
PMCID:
PMC10872477
AbstractArticlePDF–1.7M
3.
Ino2, activator of yeast phospholipid biosynthetic genes, interacts with basal transcription factors TFIIA and Bdf1
Maike Engelhardt, Stefan Hintze, Eva-Carina Wendegatz, Julia Lettow, Hans-Joachim Schüller
Curr Genet. 2023; 69(4-6): 289–300. Published online 2023 Nov 10. doi: 10.1007/s00294-023-01277-z
PMCID:
PMC10716077
AbstractArticlePDF–1.6M
4.
The social and structural architecture of the yeast protein interactome
André C. Michaelis, Andreas-David Brunner, Maximilian Zwiebel, Florian Meier, Maximilian T. Strauss, Isabell Bludau, Matthias Mann
Nature. 2023; 624(7990): 192–200. Published online 2023 Nov 15. doi: 10.1038/s41586-023-06739-5
PMCID:
PMC10700138
AbstractArticlePDF–20M
5.
Context-dependent function of the transcriptional regulator Rap1 in gene silencing and activation in Saccharomyces cerevisiae
Eliana R. Bondra, Jasper Rine
Proc Natl Acad Sci U S A. 2023 Oct 3; 120(40): e2304343120. Published online 2023 Sep 28. doi: 10.1073/pnas.2304343120
PMCID:
PMC10556627
AbstractArticlePDF–5.5M
6.
ISW1a modulates cohesin distribution in centromeric and pericentromeric regions
Ireneusz Litwin, Małgorzata Nowicka, Katarzyna Markowska, Ewa Maciaszczyk-Dziubińska, Paulina Tomaszewska, Robert Wysocki, Karol Kramarz
Nucleic Acids Res. 2023 Sep 22; 51(17): 9101–9121. Published online 2023 Jul 24. doi: 10.1093/nar/gkad612
PMCID:
PMC10516642
AbstractArticlePDF–2.8M
7.
A proteomic screen of Ty1 integrase partners identifies the protein kinase CK2 as a regulator of Ty1 retrotransposition
Anastasia Barkova, Indranil Adhya, Christine Conesa, Amna Asif-Laidin, Amandine Bonnet, Elise Rabut, Carine Chagneau, Pascale Lesage, Joël Acker
Mob DNA. 2022; 13: 26. Published online 2022 Nov 18. doi: 10.1186/s13100-022-00284-0
PMCID:
PMC9673352
AbstractArticlePDF–2.6M
8.
Yeast Smy2 and its human homologs GIGYF1 and -2 regulate Cdc48/VCP function during transcription stress
Michelle Harreman Lehner, Jane Walker, Kotryna Temcinaite, Anna Herlihy, Michael Taschner, Adam C. Berger, Anita H. Corbett, A. Barbara Dirac Svejstrup, Jesper Q. Svejstrup
Cell Rep. 2022 Oct 25; 41(4): 111536. Published online 2022 Oct 25. doi: 10.1016/j.celrep.2022.111536
PMCID:
PMC9638028
AbstractArticle
9.
New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources
Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry
Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224
PMCID:
PMC9209811
AbstractArticlePDF–818K
10.
Rif2 protects Rap1-depleted telomeres from MRX-mediated degradation in Saccharomyces cerevisiae
Fernando Rodrigo Rosas Bringas, Sonia Stinus, Pien de Zoeten, Marita Cohn, Michael Chang
eLife. 2022; 11: e74090. Published online 2022 Jan 19. doi: 10.7554/eLife.74090
PMCID:
PMC8791636
AbstractArticlePDF–1.8M
11.
Phosphorylation of luminal region of the SUN-domain protein Mps3 promotes nuclear envelope localization during meiosis
Hanumanthu BD Prasada Rao, Takeshi Sato, Kiran Challa, Yurika Fujita, Miki Shinohara, Akira Shinohara
eLife. 2021; 10: e63119. Published online 2021 Sep 29. doi: 10.7554/eLife.63119
PMCID:
PMC8570693
AbstractArticlePDF–4.7M
12.
The histone chaperone Spt6 is required for normal recruitment of the capping enzyme Abd1 to transcribed regions
Rajaraman Gopalakrishnan, Fred Winston
J Biol Chem. 2021 Oct; 297(4): 101205. Published online 2021 Sep 17. doi: 10.1016/j.jbc.2021.101205
PMCID:
PMC8511950
AbstractArticlePDF–3.1M
13.
Budding yeast Rap1, but not telomeric DNA, is inhibitory for multiple stages of DNA replication in vitro
Max E Douglas, John F X Diffley
Nucleic Acids Res. 2021 Jun 4; 49(10): 5671–5683. Published online 2021 May 28. doi: 10.1093/nar/gkab416
PMCID:
PMC8191780
AbstractArticlePDF–2.1M
14.
Mechanism of MRX inhibition by Rif2 at telomeres
Florian Roisné-Hamelin, Sabrina Pobiega, Kévin Jézéquel, Simona Miron, Jordane Dépagne, Xavier Veaute, Didier Busso, Marie-Hélène Le Du, Isabelle Callebaut, Jean-Baptiste Charbonnier, Philippe Cuniasse, Sophie Zinn-Justin, Stéphane Marcand
Nat Commun. 2021; 12: 2763. Published online 2021 May 12. doi: 10.1038/s41467-021-23035-w
PMCID:
PMC8115599
AbstractArticlePDF–3.9M
15.
Sir3 mediates long-range chromosome interactions in budding yeast
Myriam Ruault, Vittore F. Scolari, Luciana Lazar-Stefanita, Antoine Hocher, Isabelle Loïodice, Romain Koszul, Angela Taddei
Genome Res. 2021 Mar; 31(3): 411–425. doi: 10.1101/gr.267872.120
PMCID:
PMC7919453
AbstractArticlePDF–9.3M
16.
Fpr1, a primary target of rapamycin, functions as a transcription factor for ribosomal protein genes cooperatively with Hmo1 in Saccharomyces cerevisiae
Koji Kasahara, Risa Nakayama, Yuh Shiwa, Yu Kanesaki, Taichiro Ishige, Hirofumi Yoshikawa, Tetsuro Kokubo
PLoS Genet. 2020 Jun; 16(6): e1008865. Published online 2020 Jun 30. doi: 10.1371/journal.pgen.1008865
PMCID:
PMC7357790
AbstractArticlePDF–3.5M
17.
Chaperone-Mediated Protein Disaggregation Triggers Proteolytic Clearance of Intra-nuclear Protein Inclusions
Fabian den Brave, Lucas V. Cairo, Chandhuru Jagadeesan, Carmen Ruger-Herreros, Axel Mogk, Bernd Bukau, Stefan Jentsch
Cell Rep. 2020 Jun 2; 31(9): 107680. Published online 2020 Jun 2. doi: 10.1016/j.celrep.2020.107680
PMCID:
PMC7273177
AbstractArticle
18.
A prion epigenetic switch establishes an active chromatin state
Zachary H. Harvey, Anupam K. Chakravarty, Raymond A. Futia, Daniel F. Jarosz
Cell. Author manuscript; available in PMC 2021 Mar 5.
Published in final edited form as: Cell. 2020 Mar 5; 180(5): 928–940.e14. Published online 2020 Feb 27. doi: 10.1016/j.cell.2020.02.014
PMCID:
PMC7195540
AbstractArticlePDF–2.8M
19.
Structural basis of G-quadruplex DNA recognition by the yeast telomeric protein Rap1
Anna Traczyk, Chong Wai Liew, David James Gill, Daniela Rhodes
Nucleic Acids Res. 2020 May 7; 48(8): 4562–4571. Published online 2020 Mar 18. doi: 10.1093/nar/gkaa171
PMCID:
PMC7192608
AbstractArticlePDF–4.2M
20.
DNA binding modes influence Rap1 activity in the regulation of telomere length and MRX functions at DNA ends
Diego Bonetti, Carlo Rinaldi, Jacopo Vertemara, Marco Notaro, Paolo Pizzul, Renata Tisi, Giuseppe Zampella, Maria Pia Longhese
Nucleic Acids Res. 2020 Mar 18; 48(5): 2424–2441. Published online 2019 Dec 27. doi: 10.1093/nar/gkz1203
PMCID:
PMC7049697
AbstractArticlePDF–5.9M

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