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Items: 20

1.
New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources
Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry
Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224
PMCID:
PMC9209811
AbstractArticlePDF–818K
2.
RNA-binding and prion domains: the Yin and Yang of phase separation
Nieves Lorenzo Gotor, Alexandros Armaos, Giulia Calloni, Marc Torrent Burgas, R Martin Vabulas, Natalia Sanchez De Groot, Gian Gaetano Tartaglia
Nucleic Acids Res. 2020 Sep 25; 48(17): 9491–9504. Published online 2020 Aug 28. doi: 10.1093/nar/gkaa681
PMCID:
PMC7515694
AbstractArticlePDF–3.1M
3.
A genetic interaction map centered on cohesin reveals auxiliary factors involved in sister chromatid cohesion in S. cerevisiae
Su Ming Sun, Amandine Batté, Mireille Elmer, Sophie C. van der Horst, Tibor van Welsem, Gordon Bean, Trey Ideker, Fred van Leeuwen, Haico van Attikum
J Cell Sci. 2020 May 15; 133(10): jcs237628. Published online 2020 May 22. doi: 10.1242/jcs.237628
PMCID:
PMC7325435
AbstractArticle
4.
The nucleotide sequence of Saccharomyces cerevisiae chromosome XII
M. Johnston, L. Hillier, L. Riles, other members of the Genome Sequencing Center, K. Albermann, B. André, W. Ansorge, V. Benes, M. Brückner, H. Delius, E. Dubois, A. Düsterhöft, K.-D. Entian, M. Floeth, A. Goffeau, U. Hebling, K. Heumann, D. Heuss-Neitzel, H. Hilbert, F. Hilger, K. Kleine, P. Kötter, E. J. Louis, F. Messenguy, H. W. Mewes, T. Miosga, D. Möstl, S. Müller-Auer, U. Nentwich, B. Obermaier, E. Piravandi, T. M. Pohl, D. Portetelle, B. Purnelle, S. Rechmann, M. Rieger, M. Rinke, M. Rose, M. Scharfe, B. Scherens, P. Scholler, C. Schwager, S. Schwarz, A. P. Underwood, L. A. Urrestarazu, M. Vandenbol, P. Verhasselt, F. Vierendeels, M Voet, G. Volckaert, H. Voss, R. Wambutt, E. Wedler, H. Wedler, F. K. Zimmermann, A. Zollner, J. Hani, J. D. Hoheisel
Nature. Author manuscript; available in PMC 2019 Jul 9.
Published in final edited form as: Nature. 1997 May 29; 387(6632 Suppl): 87–90.
PMCID:
PMC6615710
AbstractArticlePDF–424K
5.
A global interaction network maps a wiring diagram of cellular function
Michael Costanzo, Benjamin VanderSluis, Elizabeth N. Koch, Anastasia Baryshnikova, Carles Pons, Guihong Tan, Wen Wang, Matej Usaj, Julia Hanchard, Susan D. Lee, Vicent Pelechano, Erin B. Styles, Maximilian Billmann, Jolanda van Leeuwen, Nydia van Dyk, Zhen-Yuan Lin, Elena Kuzmin, Justin Nelson, Jeff S. Piotrowski, Tharan Srikumar, Sondra Bahr, Yiqun Chen, Raamesh Deshpande, Christoph F. Kurat, Sheena C. Li, Zhijian Li, Mojca Mattiazzi Usaj, Hiroki Okada, Natasha Pascoe, Bryan-Joseph San Luis, Sara Sharifpoor, Emira Shuteriqi, Scott W. Simpkins, Jamie Snider, Harsha Garadi Suresh, Yizhao Tan, Hongwei Zhu, Noel Malod-Dognin, Vuk Janjic, Natasa Przulj, Olga G. Troyanskaya, Igor Stagljar, Tian Xia, Yoshikazu Ohya, Anne-Claude Gingras, Brian Raught, Michael Boutros, Lars M. Steinmetz, Claire L. Moore, Adam P. Rosebrock, Amy A. Caudy, Chad L. Myers, Brenda Andrews, Charles Boone
Science. Author manuscript; available in PMC 2017 Oct 30.
Published in final edited form as: Science. 2016 Sep 23; 353(6306): aaf1420. doi: 10.1126/science.aaf1420
PMCID:
PMC5661885
AbstractArticlePDF–2.6M
6.
The Genetic Landscape of a Cell
Michael Costanzo, Anastasia Baryshnikova, Jeremy Bellay, Yungil Kim, Eric D. Spear, Carolyn S. Sevier, Huiming Ding, Judice L.Y. Koh, Kiana Toufighi, Sara Mostafavi, Jeany Prinz, Robert P. St. Onge, Benjamin VanderSluis, Taras Makhnevych, Franco J. Vizeacoumar, Solmaz Alizadeh, Sondra Bahr, Renee L. Brost, Yiqun Chen, Murat Cokol, Raamesh Deshpande, Zhijian Li, Zhen-Yuan Lin, Wendy Liang, Michaela Marback, Jadine Paw, Bryan-Joseph San Luis, Ermira Shuteriqi, Amy Hin Yan Tong, Nydia van Dyk, Iain M. Wallace, Joseph A. Whitney, Matthew T. Weirauch, Guoqing Zhong, Hongwei Zhu, Walid A. Houry, Michael Brudno, Sasan Ragibizadeh, Balázs Papp, Csaba Pál, Frederick P. Roth, Guri Giaever, Corey Nislow, Olga G. Troyanskaya, Howard Bussey, Gary D. Bader, Anne-Claude Gingras, Quaid D. Morris, Philip M. Kim, Chris A. Kaiser, Chad L. Myers, Brenda J. Andrews, Charles Boone
Science. Author manuscript; available in PMC 2017 Sep 15.
Published in final edited form as: Science. 2010 Jan 22; 327(5964): 425–431. doi: 10.1126/science.1180823
PMCID:
PMC5600254
AbstractArticlePDF–2.4M
7.
A Functional Link Between Bir1 and the Saccharomyces cerevisiae Ctf19 Kinetochore Complex Revealed Through Quantitative Fitness Analysis
Vasso Makrantoni, Adam Ciesiolka, Conor Lawless, Josefin Fernius, Adele Marston, David Lydall, Michael J. R. Stark
G3 (Bethesda) 2017 Sep; 7(9): 3203–3215. Published online 2017 Jul 28. doi: 10.1534/g3.117.300089
PMCID:
PMC5592945
AbstractArticlePDF–1.7M
8.
High-Throughput Genetic and Gene Expression Analysis of the RNAPII-CTD Reveals Unexpected Connections to SRB10/CDK8
Maria J. Aristizabal, Gian Luca Negri, Joris J. Benschop, Frank C. P. Holstege, Nevan J. Krogan, Michael S. Kobor
PLoS Genet. 2013 Aug; 9(8): e1003758. Published online 2013 Aug 29. doi: 10.1371/journal.pgen.1003758
PMCID:
PMC3757075
AbstractArticlePDF–4.4M
9.
Dissection of DNA Damage Responses Using Multiconditional Genetic Interaction Maps
Aude Guénolé, Rohith Srivas, Kees Vreeken, Ze Zhong Wang, Shuyi Wang, Nevan J. Krogan, Trey Ideker, Haico van Attikum
Mol Cell. Author manuscript; available in PMC 2014 Jan 24.
Published in final edited form as: Mol Cell. 2013 Jan 24; 49(2): 346–358. Published online 2012 Dec 27. doi: 10.1016/j.molcel.2012.11.023
PMCID:
PMC3633480
AbstractArticlePDF–4.8M
10.
Changes in the ratio of free NEDD8 to ubiquitin triggers NEDDylation by ubiquitin enzymes
Roland Hjerpe, Yann Thomas, Jesse Chen, Aleksandra Zemla, Siobhan Curran, Natalia Shpiro, Lawrence R. Dick, Thimo Kurz
Biochem J. 2012 Feb 1; 441(Pt 3): 927–936. Prepublished online 2011 Oct 17. Published online 2012 Jan 16. doi: 10.1042/BJ20111671
PMCID:
PMC3280039
AbstractArticlePDF–1.0M
11.
A RING E3–substrate complex poised for ubiquitin-like protein transfer: structural insights into cullin-RING ligases
Matthew F. Calabrese, Daniel C. Scott, David M. Duda, Christy R.R. Grace, Igor Kurinov, Richard W. Kriwacki, Brenda A. Schulman
Nat Struct Mol Biol. Author manuscript; available in PMC 2012 Feb 1.
Published in final edited form as: Nat Struct Mol Biol. 2011 Aug; 18(8): 947–949. Published online 2011 Jul 17. doi: 10.1038/nsmb.2086
PMCID:
PMC3245743
AbstractArticlePDF–1.5M
12.
Secondary structure is required for 3′ splice site recognition in yeast
Ondřej Gahura, Christian Hammann, Anna Valentová, František Půta, Petr Folk
Nucleic Acids Res. 2011 Dec; 39(22): 9759–9767. Published online 2011 Sep 5. doi: 10.1093/nar/gkr662
PMCID:
PMC3239191
AbstractArticlePDF–2.2M
13.
N-Terminal Acetylation Acts as an Avidity Enhancer Within an Interconnected Multiprotein Complex
Daniel C. Scott, Julie K. Monda, Eric J. Bennett, J. Wade Harper, Brenda A. Schulman
Science. Author manuscript; available in PMC 2012 May 4.
Published in final edited form as: Science. 2011 Nov 4; 334(6056): 674–678. Published online 2011 Sep 22. doi: 10.1126/science.1209307
PMCID:
PMC3214010
AbstractArticlePDF–3.3M
14.
The TFIIH subunit Tfb3 regulates cullin neddylation
Gwenaël Rabut, Gaëlle Le Dez, Rati Verma, Taras Makhnevych, Axel Knebel, Thimo Kurz, Charles Boone, Raymond J. Deshaies, Matthias Peter
Mol Cell. Author manuscript; available in PMC 2012 Feb 5.
Published in final edited form as: Mol Cell. 2011 Aug 5; 43(3): 488–495. doi: 10.1016/j.molcel.2011.05.032
PMCID:
PMC3186349
AbstractArticlePDF–3.2M
15.
A dual E3 mechanism for Rub1 ligation to Cdc53
Daniel C. Scott, Julie K. Monda, Christy R. R. Grace, David M. Duda, Richard W. Kriwacki, Thimo Kurz, Brenda A. Schulman
Mol Cell. Author manuscript; available in PMC 2011 Mar 10.
Published in final edited form as: Mol Cell. 2010 Sep 10; 39(5): 784–796. doi: 10.1016/j.molcel.2010.08.030
PMCID:
PMC3001161
AbstractArticlePDF–4.6M
16.
Cullin neddylation and substrate-adaptors counteract SCF inhibition by the CAND1-like protein Lag2 in Saccharomyces cerevisiae
Edyta Siergiejuk, Daniel C Scott, Brenda A Schulman, Kay Hofmann, Thimo Kurz, Matthias Peter
EMBO J. 2009 Dec 16; 28(24): 3845–3856. Published online 2009 Nov 26. doi: 10.1038/emboj.2009.354
PMCID:
PMC2797064
AbstractArticlePDF–1008K
17.
Association of yeast Upf1p with direct substrates of the NMD pathway
Marcus J. O. Johansson, Feng He, Phyllis Spatrick, Chunfang Li, Allan Jacobson
Proc Natl Acad Sci U S A. 2007 Dec 26; 104(52): 20872–20877. Published online 2007 Dec 17. doi: 10.1073/pnas.0709257105
PMCID:
PMC2409234
AbstractArticlePDF–864K
18.
A novel protein modification pathway related to the ubiquitin system.
D Liakopoulos, G Doenges, K Matuschewski, S Jentsch
EMBO J. 1998 Apr 15; 17(8): 2208–2214. doi: 10.1093/emboj/17.8.2208
PMCID:
PMC1170565
SummaryPDF–310K
19.
H2B Ubiquitin Protease Ubp8 and Sgf11 Constitute a Discrete Functional Module within the Saccharomyces cerevisiae SAGA Complex
Kristin Ingvarsdottir, Nevan J. Krogan, N. C. Tolga Emre, Anastasia Wyce, Natalie J. Thompson, Andrew Emili, Timothy R. Hughes, Jack F. Greenblatt, Shelley L. Berger
Mol Cell Biol. 2005 Feb; 25(3): 1162–1172. doi: 10.1128/MCB.25.3.1162-1172.2005
PMCID:
PMC544016
AbstractArticlePDF–556K
20.
Genetic Interactions between TFIIS and the Swi-Snf Chromatin-Remodeling Complex
Judith K. Davie, Caroline M. Kane
Mol Cell Biol. 2000 Aug; 20(16): 5960–5973. doi: 10.1128/mcb.20.16.5960-5973.2000
PMCID:
PMC86073
AbstractArticlePDF–1.5M

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