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Items: 1 to 20 of 136

1.
Multiple direct and indirect roles of the Paf1 complex in transcription elongation, splicing, and histone modifications
Alex M. Francette, Karen M. Arndt
Cell Rep. Author manuscript; available in PMC 2024 Oct 23.
Published in final edited form as: Cell Rep. 2024 Sep 24; 43(9): 114730. Published online 2024 Sep 7. doi: 10.1016/j.celrep.2024.114730
PMCID:
PMC11498942
AbstractArticlePDF–3.8M
2.
Protein interaction network revealed by quantitative proteomic analysis links TFIIB to multiple aspects of the transcription cycle
Michael J. O’Brien, Athar Ansari
Biochim Biophys Acta Proteins Proteom. Author manuscript; available in PMC 2024 Feb 16.
Published in final edited form as: Biochim Biophys Acta Proteins Proteom. 2024 Jan 1; 1872(1): 140968. Published online 2023 Oct 19. doi: 10.1016/j.bbapap.2023.140968
PMCID:
PMC10872477
AbstractArticlePDF–1.7M
3.
Adaptive preservation of orphan ribosomal proteins in chaperone-dispersed condensates
Asif Ali, Rania Garde, Olivia C. Schaffer, Jared A. M. Bard, Kabir Husain, Samantha Keyport Kik, Kathleen A. Davis, Sofia Luengo-Woods, Maya G. Igarashi, D. Allan Drummond, Allison H. Squires, David Pincus
Nat Cell Biol. Author manuscript; available in PMC 2024 Feb 15.
Published in final edited form as: Nat Cell Biol. 2023 Nov; 25(11): 1691–1703. Published online 2023 Oct 16. doi: 10.1038/s41556-023-01253-2
PMCID:
PMC10868727
AbstractArticlePDF–7.0M
4.
The social and structural architecture of the yeast protein interactome
André C. Michaelis, Andreas-David Brunner, Maximilian Zwiebel, Florian Meier, Maximilian T. Strauss, Isabell Bludau, Matthias Mann
Nature. 2023; 624(7990): 192–200. Published online 2023 Nov 15. doi: 10.1038/s41586-023-06739-5
PMCID:
PMC10700138
AbstractArticlePDF–20M
5.
Cla4 phosphorylates histone methyltransferase Set1 to prevent its degradation by the APC/CCdh1 complex
Xuanyunjing Gong, Shanshan Wang, Qi Yu, Min Wang, Feng Ge, Shanshan Li, Xilan Yu
Sci Adv. 2023 Sep 29; 9(39): eadi7238. Published online 2023 Sep 29. doi: 10.1126/sciadv.adi7238
PMCID:
PMC10541012
AbstractArticlePDF–2.9M
6.
ISW1a modulates cohesin distribution in centromeric and pericentromeric regions
Ireneusz Litwin, Małgorzata Nowicka, Katarzyna Markowska, Ewa Maciaszczyk-Dziubińska, Paulina Tomaszewska, Robert Wysocki, Karol Kramarz
Nucleic Acids Res. 2023 Sep 22; 51(17): 9101–9121. Published online 2023 Jul 24. doi: 10.1093/nar/gkad612
PMCID:
PMC10516642
AbstractArticlePDF–2.8M
7.
The Hsp90 molecular chaperone governs client proteins by targeting intrinsically disordered regions
Janhavi A. Kolhe, Neethu L. Babu, Brian C. Freeman
Mol Cell. Author manuscript; available in PMC 2024 Jun 15.
Published in final edited form as: Mol Cell. 2023 Jun 15; 83(12): 2035–2044.e7. Published online 2023 Jun 8. doi: 10.1016/j.molcel.2023.05.021
PMCID:
PMC10297700
AbstractArticlePDF–2.0M
8.
Paf1 complex subunit Rtf1 stimulates H2B ubiquitylation by interacting with the highly conserved N-terminal helix of Rad6
Tasniem Fetian, Brendan M. McShane, Nicole L. Horan, Donya N. Shodja, Jason D. True, Amber L. Mosley, Karen M. Arndt
Proc Natl Acad Sci U S A. 2023 May 30; 120(22): e2220041120. Published online 2023 May 22. doi: 10.1073/pnas.2220041120
PMCID:
PMC10235976
AbstractArticlePDF–3.7M
9.
A systematic proximity ligation approach to studying protein‐substrate specificity identifies the substrate spectrum of the Ssh1 translocon
Nir Cohen, Naama Aviram, Maya Schuldiner
EMBO J. 2023 Jun; 42(11): e113385. Published online 2023 Apr 19. doi: 10.15252/embj.2022113385
PMCID:
PMC10233368
AbstractArticlePDF–1.2M
10.
A synthetic genetic array screen for interactions with the RNA helicase DED1 during cell stress in budding yeast
Sara B Carey, Hannah M List, Ashwin Siby, Paolo Guerra, Timothy A Bolger
G3 (Bethesda) 2023 Jan; 13(1): jkac296. Published online 2022 Nov 21. doi: 10.1093/g3journal/jkac296
PMCID:
PMC9836348
AbstractArticlePDF–857K
11.
Yeast Smy2 and its human homologs GIGYF1 and -2 regulate Cdc48/VCP function during transcription stress
Michelle Harreman Lehner, Jane Walker, Kotryna Temcinaite, Anna Herlihy, Michael Taschner, Adam C. Berger, Anita H. Corbett, A. Barbara Dirac Svejstrup, Jesper Q. Svejstrup
Cell Rep. 2022 Oct 25; 41(4): 111536. Published online 2022 Oct 25. doi: 10.1016/j.celrep.2022.111536
PMCID:
PMC9638028
AbstractArticle
12.
The Paf1 complex is required for RNA polymerase II removal in response to DNA damage
Feilong Chen, Beibei Liu, Hao Zhou, Jiafu Long
Proc Natl Acad Sci U S A. 2022 Oct 4; 119(40): e2207332119. Published online 2022 Sep 26. doi: 10.1073/pnas.2207332119
PMCID:
PMC9546532
AbstractArticlePDF–2.1M
13.
New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources
Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry
Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224
PMCID:
PMC9209811
AbstractArticlePDF–818K
14.
Opposing functions of the Hda1 complex and histone H2B mono-ubiquitylation in regulating cryptic transcription in Saccharomyces cerevisiae
Margaret K Shirra, Rachel A Kocik, Mitchell A Ellison, Karen M Arndt
G3 (Bethesda) 2021 Nov; 11(11): jkab298. Published online 2021 Aug 31. doi: 10.1093/g3journal/jkab298
PMCID:
PMC8527469
AbstractArticlePDF–1.0M
15.
The histone chaperone Spt6 is required for normal recruitment of the capping enzyme Abd1 to transcribed regions
Rajaraman Gopalakrishnan, Fred Winston
J Biol Chem. 2021 Oct; 297(4): 101205. Published online 2021 Sep 17. doi: 10.1016/j.jbc.2021.101205
PMCID:
PMC8511950
AbstractArticlePDF–3.1M
16.
Spt4 facilitates the movement of RNA polymerase II through the +2 nucleosomal barrier
Ülkü Uzun, Thomas Brown, Harry Fischl, Andrew Angel, Jane Mellor
Cell Rep. 2021 Sep 28; 36(13): 109755. Published online 2021 Sep 29. doi: 10.1016/j.celrep.2021.109755
PMCID:
PMC8492961
AbstractArticle
17.
Biochemical insights into Paf1 complex–induced stimulation of Rad6/Bre1-mediated H2B monoubiquitination
Feilong Chen, Beibei Liu, Lu Guo, Xuan Ge, Wei Feng, De-Feng Li, Hao Zhou, Jiafu Long
Proc Natl Acad Sci U S A. 2021 Aug 17; 118(33): e2025291118. Published online 2021 Aug 12. doi: 10.1073/pnas.2025291118
PMCID:
PMC8379938
AbstractArticlePDF–1.6M
18.
FACT interacts with Set3 HDAC and fine-tunes GAL1 transcription in response to environmental stimulation
He Leng, Shaofeng Liu, Yang Lei, Yuantao Tang, Shijia Gu, Jiazhi Hu, She Chen, Jianxun Feng, Qing Li
Nucleic Acids Res. 2021 Jun 4; 49(10): 5502–5519. Published online 2021 May 8. doi: 10.1093/nar/gkab312
PMCID:
PMC8191775
AbstractArticlePDF–3.0M
19.
Sir4 Deficiency Reverses Cell Senescence by Sub-Telomere Recombination
Jun Liu, Xiaojing Hong, Lihui Wang, Chao-Ya Liang, Jun-Ping Liu
Cells. 2021 Apr; 10(4): 778. Published online 2021 Apr 1. doi: 10.3390/cells10040778
PMCID:
PMC8066019
AbstractArticlePDF–4.6M
20.
Subcellular localization of the J-protein Sis1 regulates the heat shock response
Zoë A. Feder, Asif Ali, Abhyudai Singh, Joanna Krakowiak, Xu Zheng, Vytas P. Bindokas, Donald Wolfgeher, Stephen J. Kron, David Pincus
J Cell Biol. 2021 Jan 4; 220(1): e202005165. Published online 2020 Dec 16. doi: 10.1083/jcb.202005165
PMCID:
PMC7748816
AbstractArticlePDF–4.6M

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