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Items: 1 to 20 of 47

1.
Protein interaction network revealed by quantitative proteomic analysis links TFIIB to multiple aspects of the transcription cycle
Michael J. O’Brien, Athar Ansari
Biochim Biophys Acta Proteins Proteom. Author manuscript; available in PMC 2024 Feb 16.
Published in final edited form as: Biochim Biophys Acta Proteins Proteom. 2024 Jan 1; 1872(1): 140968. Published online 2023 Oct 19. doi: 10.1016/j.bbapap.2023.140968
PMCID:
PMC10872477
AbstractArticlePDF–1.7M
2.
The social and structural architecture of the yeast protein interactome
André C. Michaelis, Andreas-David Brunner, Maximilian Zwiebel, Florian Meier, Maximilian T. Strauss, Isabell Bludau, Matthias Mann
Nature. 2023; 624(7990): 192–200. Published online 2023 Nov 15. doi: 10.1038/s41586-023-06739-5
PMCID:
PMC10700138
AbstractArticlePDF–20M
3.
New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources
Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry
Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224
PMCID:
PMC9209811
AbstractArticlePDF–818K
4.
Phylogenetic Comparison and Splicing Analysis of the U1 snRNP-specific Protein U1C in Eukaryotes
Kai-Lu Zhang, Jian-Li Zhou, Jing-Fang Yang, Yu-Zhen Zhao, Debatosh Das, Ge-Fei Hao, Caie Wu, Jianhua Zhang, Fu-Yuan Zhu, Mo-Xian Chen, Shao-Ming Zhou
Front Mol Biosci. 2021; 8: 696319. Published online 2021 Sep 9. doi: 10.3389/fmolb.2021.696319
PMCID:
PMC8458698
AbstractArticlePDF–4.4M
5.
Structural insights into how Prp5 proofreads the pre-mRNA branch site
Zhenwei Zhang, Norbert Rigo, Olexandr Dybkov, Jean-Baptiste Fourmann, Cindy L. Will, Vinay Kumar, Henning Urlaub, Holger Stark, Reinhard Lührmann
Nature. 2021; 596(7871): 296–300. Published online 2021 Aug 4. doi: 10.1038/s41586-021-03789-5
PMCID:
PMC8357632
AbstractArticlePDF–16M
6.
Comprehensive Synthetic Genetic Array Analysis of Alleles That Interact with Mutation of the Saccharomyces cerevisiae RecQ Helicases Hrq1 and Sgs1
Elsbeth Sanders, Phoebe A. Nguyen, Cody M. Rogers, Matthew L. Bochman
G3 (Bethesda) 2020 Dec; 10(12): 4359–4368. Published online 2020 Oct 28. doi: 10.1534/g3.120.401709
PMCID:
PMC7718751
AbstractArticlePDF–1.2M
7.
RNA-binding and prion domains: the Yin and Yang of phase separation
Nieves Lorenzo Gotor, Alexandros Armaos, Giulia Calloni, Marc Torrent Burgas, R Martin Vabulas, Natalia Sanchez De Groot, Gian Gaetano Tartaglia
Nucleic Acids Res. 2020 Sep 25; 48(17): 9491–9504. Published online 2020 Aug 28. doi: 10.1093/nar/gkaa681
PMCID:
PMC7515694
AbstractArticlePDF–3.1M
8.
A unified mechanism for intron and exon definition and back-splicing
Xueni Li, Shiheng Liu, Lingdi Zhang, Aaron Issaian, Ryan C. Hill, Sara Espinosa, Shasha Shi, Yanxiang Cui, Kalli Kappel, Rhiju Das, Kirk C. Hansen, Z. Hong Zhou, Rui Zhao
Nature. Author manuscript; available in PMC 2020 Mar 4.
Published in final edited form as: Nature. 2019 Sep; 573(7774): 375–380. Published online 2019 Sep 4. doi: 10.1038/s41586-019-1523-6
PMCID:
PMC6939996
AbstractArticlePDF–4.8M
9.
Prespliceosome structure provides insights into spliceosome assembly and regulation
Clemens Plaschka, Pei-Chun Lin, Clément Charenton, Kiyoshi Nagai
Nature. Author manuscript; available in PMC 2019 Jan 11.
Published in final edited form as: Nature. 2018 Jul; 559(7714): 419–422. Published online 2018 Jul 11. doi: 10.1038/s41586-018-0323-8
PMCID:
PMC6141012
AbstractArticlePDF–6.5M
10.
Dynamics and consequences of spliceosome E complex formation
Joshua Donald Larson, Aaron A Hoskins
eLife. 2017; 6: e27592. Published online 2017 Aug 22. doi: 10.7554/eLife.27592
PMCID:
PMC5779234
AbstractArticlePDF–1.5M
11.
Genome-Wide Mapping of Decay Factor–mRNA Interactions in Yeast Identifies Nutrient-Responsive Transcripts as Targets of the Deadenylase Ccr4
Jason E. Miller, Liye Zhang, Haoyang Jiang, Yunfei Li, B. Franklin Pugh, Joseph C. Reese
G3 (Bethesda) 2018 Jan; 8(1): 315–330. Published online 2017 Nov 20. doi: 10.1534/g3.117.300415
PMCID:
PMC5765359
AbstractArticlePDF–2.2M
12.
CryoEM structure of Saccharomyces cerevisiae U1 snRNP offers insight into alternative splicing
Xueni Li, Shiheng Liu, Jiansen Jiang, Lingdi Zhang, Sara Espinosa, Ryan C. Hill, Kirk C. Hansen, Z. Hong Zhou, Rui Zhao
Nat Commun. 2017; 8: 1035. Published online 2017 Oct 19. doi: 10.1038/s41467-017-01241-9
Correction in:
Nat Commun. 2018; 9: 1495.
PMCID:
PMC5648754
AbstractArticlePDF–5.7M
13.
A novel translational control mechanism involving RNA structures within coding sequences
Jennifer Jungfleisch, Danny D. Nedialkova, Ivan Dotu, Katherine E. Sloan, Neus Martinez-Bosch, Lukas Brüning, Emanuele Raineri, Pilar Navarro, Markus T. Bohnsack, Sebastian A. Leidel, Juana Díez
Genome Res. 2017 Jan; 27(1): 95–106. doi: 10.1101/gr.209015.116
Correction in:
Genome Res. 2017 Apr; 27(4): 663.
PMCID:
PMC5204348
AbstractArticlePDF–1.3M
14.
Structure–function analysis and genetic interactions of the Luc7 subunit of the Saccharomyces cerevisiae U1 snRNP
Radhika Agarwal, Beate Schwer, Stewart Shuman
RNA. 2016 Sep; 22(9): 1302–1310. doi: 10.1261/rna.056911.116
PMCID:
PMC4986886
AbstractArticlePDF–1.0M
15.
Single molecule analysis reveals reversible and irreversible steps during spliceosome activation
Aaron A Hoskins, Margaret L Rodgers, Larry J Friedman, Jeff Gelles, Melissa J Moore
eLife. 2016; 5: e14166. Published online 2016 May 31. doi: 10.7554/eLife.14166
PMCID:
PMC4922858
AbstractArticlePDF–2.9M
16.
A deep proteomics perspective on CRM1-mediated nuclear export and nucleocytoplasmic partitioning
Koray Kırlı, Samir Karaca, Heinz Jürgen Dehne, Matthias Samwer, Kuan Ting Pan, Christof Lenz, Henning Urlaub, Dirk Görlich
eLife. 2015; 4: e11466. Published online 2015 Dec 17. doi: 10.7554/eLife.11466
PMCID:
PMC4764573
AbstractArticlePDF–5.7M
17.
The Replisome-Coupled E3 Ubiquitin Ligase Rtt101Mms22 Counteracts Mrc1 Function to Tolerate Genotoxic Stress
Raymond Buser, Vanessa Kellner, Andre Melnik, Caroline Wilson-Zbinden, René Schellhaas, Lisa Kastner, Wojciech Piwko, Martina Dees, Paola Picotti, Marija Maric, Karim Labib, Brian Luke, Matthias Peter
PLoS Genet. 2016 Feb; 12(2): e1005843. Published online 2016 Feb 5. doi: 10.1371/journal.pgen.1005843
PMCID:
PMC4743919
AbstractArticlePDF–9.8M
18.
Two Routes to Genetic Suppression of RNA Trimethylguanosine Cap Deficiency via C-Terminal Truncation of U1 snRNP Subunit Snp1 or Overexpression of RNA Polymerase Subunit Rpo26
Zhicheng R. Qiu, Beate Schwer, Stewart Shuman
G3 (Bethesda) 2015 Jul; 5(7): 1361–1370. Published online 2015 Apr 24. doi: 10.1534/g3.115.016675
PMCID:
PMC4502370
AbstractArticlePDF–1.8M
19.
Structure–function analysis and genetic interactions of the Yhc1, SmD3, SmB, and Snp1 subunits of yeast U1 snRNP and genetic interactions of SmD3 with U2 snRNP subunit Lea1
Beate Schwer, Stewart Shuman
RNA. 2015 Jun; 21(6): 1173–1186. doi: 10.1261/rna.050583.115
PMCID:
PMC4436669
AbstractArticlePDF–885K
20.
Rapid isolation and single-molecule analysis of ribonucleoproteins from cell lysate by SNAP-SiMPull
Margaret L. Rodgers, Joshua Paulson, Aaron A. Hoskins
RNA. 2015 May; 21(5): 1031–1041. doi: 10.1261/rna.047845.114
PMCID:
PMC4408783
AbstractArticlePDF–718K

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