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Items: 1 to 20 of 24

1.
Protein interaction network revealed by quantitative proteomic analysis links TFIIB to multiple aspects of the transcription cycle
Michael J. O’Brien, Athar Ansari
Biochim Biophys Acta Proteins Proteom. Author manuscript; available in PMC 2024 Feb 16.
Published in final edited form as: Biochim Biophys Acta Proteins Proteom. 2024 Jan 1; 1872(1): 140968. Published online 2023 Oct 19. doi: 10.1016/j.bbapap.2023.140968
PMCID:
PMC10872477
AbstractArticlePDF–1.7M
2.
The social and structural architecture of the yeast protein interactome
André C. Michaelis, Andreas-David Brunner, Maximilian Zwiebel, Florian Meier, Maximilian T. Strauss, Isabell Bludau, Matthias Mann
Nature. 2023; 624(7990): 192–200. Published online 2023 Nov 15. doi: 10.1038/s41586-023-06739-5
PMCID:
PMC10700138
AbstractArticlePDF–20M
3.
A systematic proximity ligation approach to studying protein‐substrate specificity identifies the substrate spectrum of the Ssh1 translocon
Nir Cohen, Naama Aviram, Maya Schuldiner
EMBO J. 2023 Jun; 42(11): e113385. Published online 2023 Apr 19. doi: 10.15252/embj.2022113385
PMCID:
PMC10233368
AbstractArticlePDF–1.2M
4.
New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources
Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry
Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224
PMCID:
PMC9209811
AbstractArticlePDF–818K
5.
Swc4 positively regulates telomere length independently of its roles in NuA4 and SWR1 complexes
Jia-Cheng Liu, Qian-Jin Li, Ming-Hong He, Can Hu, Pengfei Dai, Fei-Long Meng, Bo O Zhou, Jin-Qiu Zhou
Nucleic Acids Res. 2020 Dec 16; 48(22): 12792–12803. Published online 2020 Dec 3. doi: 10.1093/nar/gkaa1150
PMCID:
PMC7736797
AbstractArticlePDF–3.7M
6.
Loss of Elongator- and KEOPS-Dependent tRNA Modifications Leads to Severe Growth Phenotypes and Protein Aggregation in Yeast
Leticia Pollo-Oliveira, Roland Klassen, Nick Davis, Akif Ciftci, Jo Marie Bacusmo, Maria Martinelli, Michael S. DeMott, Thomas J. Begley, Peter C. Dedon, Raffael Schaffrath, Valérie de Crécy-Lagard
Biomolecules. 2020 Feb; 10(2): 322. Published online 2020 Feb 18. doi: 10.3390/biom10020322
PMCID:
PMC7072221
AbstractArticlePDF–7.5M
7.
Genome-Wide Mapping of Decay Factor–mRNA Interactions in Yeast Identifies Nutrient-Responsive Transcripts as Targets of the Deadenylase Ccr4
Jason E. Miller, Liye Zhang, Haoyang Jiang, Yunfei Li, B. Franklin Pugh, Joseph C. Reese
G3 (Bethesda) 2018 Jan; 8(1): 315–330. Published online 2017 Nov 20. doi: 10.1534/g3.117.300415
PMCID:
PMC5765359
AbstractArticlePDF–2.2M
8.
A global interaction network maps a wiring diagram of cellular function
Michael Costanzo, Benjamin VanderSluis, Elizabeth N. Koch, Anastasia Baryshnikova, Carles Pons, Guihong Tan, Wen Wang, Matej Usaj, Julia Hanchard, Susan D. Lee, Vicent Pelechano, Erin B. Styles, Maximilian Billmann, Jolanda van Leeuwen, Nydia van Dyk, Zhen-Yuan Lin, Elena Kuzmin, Justin Nelson, Jeff S. Piotrowski, Tharan Srikumar, Sondra Bahr, Yiqun Chen, Raamesh Deshpande, Christoph F. Kurat, Sheena C. Li, Zhijian Li, Mojca Mattiazzi Usaj, Hiroki Okada, Natasha Pascoe, Bryan-Joseph San Luis, Sara Sharifpoor, Emira Shuteriqi, Scott W. Simpkins, Jamie Snider, Harsha Garadi Suresh, Yizhao Tan, Hongwei Zhu, Noel Malod-Dognin, Vuk Janjic, Natasa Przulj, Olga G. Troyanskaya, Igor Stagljar, Tian Xia, Yoshikazu Ohya, Anne-Claude Gingras, Brian Raught, Michael Boutros, Lars M. Steinmetz, Claire L. Moore, Adam P. Rosebrock, Amy A. Caudy, Chad L. Myers, Brenda Andrews, Charles Boone
Science. Author manuscript; available in PMC 2017 Oct 30.
Published in final edited form as: Science. 2016 Sep 23; 353(6306): aaf1420. doi: 10.1126/science.aaf1420
PMCID:
PMC5661885
AbstractArticlePDF–2.6M
9.
Definition of a High-Confidence Mitochondrial Proteome at Quantitative Scale
Marcel Morgenstern, Sebastian B. Stiller, Philipp Lübbert, Christian D. Peikert, Stefan Dannenmaier, Friedel Drepper, Uri Weill, Philipp Höß, Reinhild Feuerstein, Michael Gebert, Maria Bohnert, Martin van der Laan, Maya Schuldiner, Conny Schütze, Silke Oeljeklaus, Nikolaus Pfanner, Nils Wiedemann, Bettina Warscheid
Cell Rep. 2017 Jun 27; 19(13): 2836–2852. Published online 2017 Jun 27. doi: 10.1016/j.celrep.2017.06.014
PMCID:
PMC5494306
AbstractArticle
10.
A novel translational control mechanism involving RNA structures within coding sequences
Jennifer Jungfleisch, Danny D. Nedialkova, Ivan Dotu, Katherine E. Sloan, Neus Martinez-Bosch, Lukas Brüning, Emanuele Raineri, Pilar Navarro, Markus T. Bohnsack, Sebastian A. Leidel, Juana Díez
Genome Res. 2017 Jan; 27(1): 95–106. doi: 10.1101/gr.209015.116
Correction in:
Genome Res. 2017 Apr; 27(4): 663.
PMCID:
PMC5204348
AbstractArticlePDF–1.3M
11.
One library to make them all: Streamlining yeast library creation by a SWAp-Tag (SWAT) strategy
Ido Yofe, Uri Weill, Matthias Meurer, Silvia Chuartzman, Einat Zalckvar, Omer Goldman, Shifra Ben-Dor, Conny Schütze, Nils Wiedemann, Michael Knop, Anton Khmelinskii, Maya Schuldiner
Nat Methods. Author manuscript; available in PMC 2016 Sep 22.
Published in final edited form as: Nat Methods. 2016 Apr; 13(4): 371–378. Published online 2016 Feb 29. doi: 10.1038/nmeth.3795
PMCID:
PMC4869835
AbstractArticlePDF–2.7M
12.
An extensive allelic series of Drosophila kae1 mutants reveals diverse and tissue-specific requirements for t6A biogenesis
Ching-Jung Lin, Peter Smibert, Xiaoyu Zhao, Jennifer F. Hu, Johnny Ramroop, Stefanie M. Kellner, Matthew A. Benton, Shubha Govind, Peter C. Dedon, Rolf Sternglanz, Eric C. Lai
RNA. 2015 Dec; 21(12): 2103–2118. doi: 10.1261/rna.053934.115
PMCID:
PMC4647464
AbstractArticlePDF–820K
13.
Cross Kingdom Functional Conservation of the Core Universally Conserved Threonylcarbamoyladenosine tRNA Synthesis Enzymes
Patrick C. Thiaville, Basma El Yacoubi, Ludovic Perrochia, Arnaud Hecker, Magali Prigent, Jennifer J. Thiaville, Patrick Forterre, Olivier Namy, Tamara Basta, Valérie de Crécy-Lagard
Eukaryot Cell. 2014 Sep; 13(9): 1222–1231. doi: 10.1128/EC.00147-14
PMCID:
PMC4187629
AbstractArticlePDF–1.4M
14.
Genome Destabilizing Mutator Alleles Drive Specific Mutational Trajectories in Saccharomyces cerevisiae
Peter C. Stirling, Yaoqing Shen, Richard Corbett, Steven J. M. Jones, Philip Hieter
Genetics. 2014 Feb; 196(2): 403–412. Published online 2013 Dec 13. doi: 10.1534/genetics.113.159806
PMCID:
PMC3914614
AbstractArticlePDF–2.3M
15.
Reconstitution and characterization of eukaryotic N6-threonylcarbamoylation of tRNA using a minimal enzyme system
Leo C. K. Wan, Daniel Y. L. Mao, Dante Neculai, Jonathan Strecker, David Chiovitti, Igor Kurinov, Gennadiy Poda, Neroshan Thevakumaran, Fang Yuan, Rachel K. Szilard, Elena Lissina, Corey Nislow, Amy A. Caudy, Daniel Durocher, Frank Sicheri
Nucleic Acids Res. 2013 Jul; 41(12): 6332–6346. Published online 2013 Apr 25. doi: 10.1093/nar/gkt322
PMCID:
PMC3695523
AbstractArticlePDF–6.4M
16.
Saccharomyces cerevisiae Genetics Predicts Candidate Therapeutic Genetic Interactions at the Mammalian Replication Fork
Derek M. van Pel, Peter C. Stirling, Sean W. Minaker, Payal Sipahimalani, Philip Hieter
G3 (Bethesda) 2013 Feb; 3(2): 273–282. Published online 2013 Feb 1. doi: 10.1534/g3.112.004754
PMCID:
PMC3564987
AbstractArticlePDF–2.3M
17.
In vitro biosynthesis of a universal t6A tRNA modification in Archaea and Eukarya
Ludovic Perrochia, Estelle Crozat, Arnaud Hecker, Wenhua Zhang, Joseph Bareille, Bruno Collinet, Herman van Tilbeurgh, Patrick Forterre, Tamara Basta
Nucleic Acids Res. 2013 Feb; 41(3): 1953–1964. Published online 2012 Dec 19. doi: 10.1093/nar/gks1287
PMCID:
PMC3561968
AbstractArticlePDF–4.0M
18.
The cotranslational function of ribosome-associated Hsp70 in eukaryotic protein homeostasis
Felix Willmund, Marta del Alamo, Sebastian Pechmann, Taotao Chen, Veronique Albanese, Eric B. Dammer, Junmin Peng, Judith Frydman
Cell. Author manuscript; available in PMC 2014 Jan 17.
Published in final edited form as: Cell. 2013 Jan 17; 152(1-2): 196–209. doi: 10.1016/j.cell.2012.12.001
PMCID:
PMC3553497
AbstractArticlePDF–5.1M
19.
Telomerase-Null Survivor Screening Identifies Novel Telomere Recombination Regulators
Yan Hu, Hong-Bo Tang, Ning-Ning Liu, Xia-Jing Tong, Wei Dang, Yi-Min Duan, Xiao-Hong Fu, Yang Zhang, Jing Peng, Fei-Long Meng, Jin-Qiu Zhou
PLoS Genet. 2013 Jan; 9(1): e1003208. Published online 2013 Jan 17. doi: 10.1371/journal.pgen.1003208
PMCID:
PMC3547846
AbstractArticlePDF–4.2M
20.
The highly conserved KEOPS/EKC complex is essential for a universal tRNA modification, t6A
Madhusudhan Srinivasan, Preeti Mehta, Yao Yu, Evelyn Prugar, Eugene V Koonin, A Wali Karzai, Rolf Sternglanz
EMBO J. 2011 Mar 2; 30(5): 873–881. Published online 2010 Dec 24. doi: 10.1038/emboj.2010.343
PMCID:
PMC3049205
AbstractArticlePDF–1.0M

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