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Select item 108724771.

Protein interaction network revealed by quantitative proteomic analysis links TFIIB to multiple aspects of the transcription cycle

Michael J. O’Brien, Athar Ansari

Biochim Biophys Acta Proteins Proteom. Author manuscript; available in PMC 2024 Feb 16.

Published in final edited form as: Biochim Biophys Acta Proteins Proteom. 2024 Jan 1; 1872(1): 140968. Published online 2023 Oct 19. doi: 10.1016/j.bbapap.2023.140968

PMCID:: PMC10872477

Abstract Article PDF–1.7M

Select item 107001382.

The social and structural architecture of the yeast protein interactome

André C. Michaelis, Andreas-David Brunner, Maximilian Zwiebel, Florian Meier, Maximilian T. Strauss, Isabell Bludau, Matthias Mann

Nature. 2023; 624(7990): 192–200. Published online 2023 Nov 15. doi: 10.1038/s41586-023-06739-5

PMCID:: PMC10700138

Abstract Article PDF–20M

Select item 105706963.

DNA-translocation-independent role of INO80 remodeler in DNA damage repairs

Vladyslava Sokolova, Gahyun Lee, Amber Mullins, Preesha Mody, Shinya Watanabe, Dongyan Tan

J Biol Chem. 2023 Oct; 299(10): 105245. Published online 2023 Sep 9. doi: 10.1016/j.jbc.2023.105245

PMCID:: PMC10570696

Abstract Article PDF–2.0M

Select item 105166424.

ISW1a modulates cohesin distribution in centromeric and pericentromeric regions

Ireneusz Litwin, Małgorzata Nowicka, Katarzyna Markowska, Ewa Maciaszczyk-Dziubińska, Paulina Tomaszewska, Robert Wysocki, Karol Kramarz

Nucleic Acids Res. 2023 Sep 22; 51(17): 9101–9121. Published online 2023 Jul 24. doi: 10.1093/nar/gkad612

PMCID:: PMC10516642

Abstract Article PDF–2.8M

Select item 99950775.

The TORC1 activates Rpd3L complex to deacetylate Ino80 and H2A.Z and repress autophagy

Xin Li, Qianyun Mei, Qi Yu, Min Wang, Fei He, Duncheng Xiao, Huan Liu, Feng Ge, Xilan Yu, Shanshan Li

Sci Adv. 2023 Mar; 9(10): eade8312. Published online 2023 Mar 8. doi: 10.1126/sciadv.ade8312

PMCID:: PMC9995077

Abstract Article PDF–2.7M

Select item 97449096.

Functional crosstalk between the cohesin loader and chromatin remodelers

Sofía Muñoz, Andrew Jones, Céline Bouchoux, Tegan Gilmore, Harshil Patel, Frank Uhlmann

Nat Commun. 2022; 13: 7698. Published online 2022 Dec 13. doi: 10.1038/s41467-022-35444-6

PMCID:: PMC9744909

Abstract Article PDF–3.2M

Select item 94789287.

Transcriptional regulator Taf14 binds DNA and is required for the function of transcription factor TFIID in the absence of histone H2A.Z

Kadri Peil, Signe Värv, Ivar Ilves, Kersti Kristjuhan, Henel Jürgens, Arnold Kristjuhan

J Biol Chem. 2022 Sep; 298(9): 102369. Published online 2022 Aug 13. doi: 10.1016/j.jbc.2022.102369

PMCID:: PMC9478928

Abstract Article PDF–1.0M

Select item 92098118.

New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources

Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry

Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224

PMCID:: PMC9209811

Abstract Article PDF–818K

Select item 90079179.

Identification of 14-3-3 Proteins, Polo kinase, and RNA-binding protein Pes4 as Key Regulators of Meiotic Commitment in Budding Yeast

Janardan N. Gavade, Chris M. Puccia, S. Grace Herod, Jonathan C. Trinidad, Luke E. Berchowitz, Soni Lacefield

Curr Biol. Author manuscript; available in PMC 2023 Apr 11.

Published in final edited form as: Curr Biol. 2022 Apr 11; 32(7): 1534–1547.e9. Published online 2022 Mar 2. doi: 10.1016/j.cub.2022.02.022

PMCID:: PMC9007917

Abstract Article PDF–2.2M

Select item 858330010.

Distinct roles of nucleosome sliding and histone modifications in controlling the fidelity of transcription initiation

Huiming Zhang, Zhaolian Lu, Yu Zhan, Judith Rodriguez, Chen Lu, Yong Xue, Zhenguo Lin

RNA Biol. 2021; 18(11): 1642–1652. Published online 2021 Jan 28. doi: 10.1080/15476286.2020.1860389

PMCID:: PMC8583300

Abstract Article PDF–6.6M

Select item 851195011.

The histone chaperone Spt6 is required for normal recruitment of the capping enzyme Abd1 to transcribed regions

Rajaraman Gopalakrishnan, Fred Winston

J Biol Chem. 2021 Oct; 297(4): 101205. Published online 2021 Sep 17. doi: 10.1016/j.jbc.2021.101205

PMCID:: PMC8511950

Abstract Article PDF–3.1M

Select item 837314212.

The conserved Tpk1 regulates non-homologous end joining double-strand break repair by phosphorylation of Nej1, a homolog of the human XLF

Matthew Jessulat, Shahreen Amin, Mohsen Hooshyar, Ramy Malty, Mohamed Taha Moutaoufik, Mara Zilocchi, Zoe Istace, Sadhna Phanse, Hiroyuki Aoki, Katayoun Omidi, Daniel Burnside, Bahram Samanfar, Khaled A Aly, Ashkan Golshani, Mohan Babu

Nucleic Acids Res. 2021 Aug 20; 49(14): 8145–8160. Published online 2021 Jul 9. doi: 10.1093/nar/gkab585

PMCID:: PMC8373142

Abstract Article PDF–2.0M

Select item 835258913.

Single-molecule imaging of chromatin remodelers reveals role of ATPase in promoting fast kinetics of target search and dissociation from chromatin

Jee Min Kim, Pat Visanpattanasin, Vivian Jou, Sheng Liu, Xiaona Tang, Qinsi Zheng, Kai Yu Li, Jonathan Snedeker, Luke D Lavis, Timothee Lionnet, Carl Wu

eLife. 2021; 10: e69387. Published online 2021 Jul 27. doi: 10.7554/eLife.69387

PMCID:: PMC8352589

Abstract Article PDF–3.4M

Select item 816375314.

Ruler elements in chromatin remodelers set nucleosome array spacing and phasing

Elisa Oberbeckmann, Vanessa Niebauer, Shinya Watanabe, Lucas Farnung, Manuela Moldt, Andrea Schmid, Patrick Cramer, Craig L. Peterson, Sebastian Eustermann, Karl-Peter Hopfner, Philipp Korber

Nat Commun. 2021; 12: 3232. Published online 2021 May 28. doi: 10.1038/s41467-021-23015-0

PMCID:: PMC8163753

Abstract Article PDF–5.6M

Select item 785523015.

Measuring DNA mechanics on the genome scale

Aakash Basu, Dmitriy G. Bobrovnikov, Zan Qureshi, Tunc Kayikcioglu, Thuy T. M. Ngo, Anand Ranjan, Sebastian Eustermann, Basilio Cieza, Michael T. Morgan, Miroslav Hejna, H. Tomas Rube, Karl-Peter Hopfner, Cynthia Wolberger, Jun S. Song, Taekjip Ha

Nature. Author manuscript; available in PMC 2021 Jun 16.

Published in final edited form as: Nature. 2021 Jan; 589(7842): 462–467. Published online 2020 Dec 16. doi: 10.1038/s41586-020-03052-3

PMCID:: PMC7855230

Abstract Article PDF–1.9M

Select item 754073016.

INO80C Remodeler Maintains Genomic Stability by Preventing Promiscuous Transcription at Replication Origins

Salih Topal, Christopher Van, Yong Xue, Michael F. Carey, Craig L. Peterson

Cell Rep. Author manuscript; available in PMC 2020 Oct 7.

Published in final edited form as: Cell Rep. 2020 Sep 8; 32(10): 108106. doi: 10.1016/j.celrep.2020.108106

PMCID:: PMC7540730

Abstract Article PDF–1.1M

Select item 750740217.

Systematic analysis of bypass suppression of essential genes

Jolanda van Leeuwen, Carles Pons, Guihong Tan, Zi Yang Wang, Jing Hou, Jochen Weile, Marinella Gebbia, Wendy Liang, Ermira Shuteriqi, Zhijian Li, Maykel Lopes, Matej Ušaj, Andreia Dos Santos Lopes, Natascha van Lieshout, Chad L Myers, Frederick P Roth, Patrick Aloy, Brenda J Andrews, Charles Boone

Mol Syst Biol. 2020 Sep; 16(9): e9828. Published online 2020 Sep 17. doi: 10.15252/msb.20209828

PMCID:: PMC7507402

Abstract Article PDF–1.9M

Select item 747097918.

Chromatin remodeler Ino80C acts independently of H2A.Z to evict promoter nucleosomes and stimulate transcription of highly expressed genes in yeast

Hongfang Qiu, Emily Biernat, Chhabi K Govind, Yashpal Rawal, Răzvan V Chereji, David J Clark, Alan G Hinnebusch

Nucleic Acids Res. 2020 Sep 4; 48(15): 8408–8430. Published online 2020 Jul 14. doi: 10.1093/nar/gkaa571

Correction in:: Nucleic Acids Res. 2021 Jan 11; 49(1): 599.

PMCID:: PMC7470979

Abstract Article PDF–5.6M

Select item 744281919.

Taf14 recognizes a common motif in transcriptional machineries and facilitates their clustering by phase separation

Guochao Chen, Duo Wang, Bin Wu, Fuxiang Yan, Hongjuan Xue, Quanmeng Wang, Shu Quan, Yong Chen

Nat Commun. 2020; 11: 4206. Published online 2020 Aug 21. doi: 10.1038/s41467-020-18021-7

PMCID:: PMC7442819

Abstract Article PDF–3.4M

Select item 725995520.

Live-cell single particle imaging reveals the role of RNA polymerase II in histone H2A.Z eviction

Anand Ranjan, Vu Q Nguyen, Sheng Liu, Jan Wisniewski, Jee Min Kim, Xiaona Tang, Gaku Mizuguchi, Ejlal Elalaoui, Timothy J Nickels, Vivian Jou, Brian P English, Qinsi Zheng, Ed Luk, Luke D Lavis, Timothee Lionnet, Carl Wu

eLife. 2020; 9: e55667. Published online 2020 Apr 27. doi: 10.7554/eLife.55667