PMC Links for GEO Profiles (Select 18437240) - PMC

Published in final edited form as: Biochim Biophys Acta Proteins Proteom. 2024 Jan 1; 1872(1): 140968. Published online 2023 Oct 19. doi: 10.1016/j.bbapap.2023.140968

PMCID:: PMC10872477

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Single-molecule quantitation of RNA-binding protein occupancy and stoichiometry defines a role for Yra1 (Aly/REF) in nuclear mRNP organization

Ryuta Asada, Andrew Dominguez, Ben Montpetit

Cell Rep. Author manuscript; available in PMC 2024 Feb 5.

Published in final edited form as: Cell Rep. 2023 Nov 28; 42(11): 113415. Published online 2023 Nov 14. doi: 10.1016/j.celrep.2023.113415

PMCID:: PMC10841842

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Fast-evolving cofactors regulate the role of HEATR5 complexes in intra-Golgi trafficking

Lucas J. Marmorale, Huan Jin, Thomas G. Reidy, Brandon Palomino-Alonso, Christopher J. Zysnarski, Fatima Jordan-Javed, Sagar Lahiri, Mara C. Duncan

J Cell Biol. 2024 Mar 4; 223(3): e202309047. Published online 2024 Jan 19. doi: 10.1083/jcb.202309047

PMCID:: PMC10798858

Article PDF–6.4M

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Tho2 is critical for the recruitment of Rrp6 to chromatin in response to perturbed mRNP biogenesis

Valentin Beauvais, Kévin Moreau, Bojan Žunar, Nadège Hervouet-Coste, Ana Novačić, Aurélia Le Dantec, Michael Primig, Christine Mosrin-Huaman, Igor Stuparević, A. Rachid Rahmouni

RNA. 2024 Jan; 30(1): 89–98. doi: 10.1261/rna.079707.123

PMCID:: PMC10726162

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The social and structural architecture of the yeast protein interactome

André C. Michaelis, Andreas-David Brunner, Maximilian Zwiebel, Florian Meier, Maximilian T. Strauss, Isabell Bludau, Matthias Mann

Nature. 2023; 624(7990): 192–200. Published online 2023 Nov 15. doi: 10.1038/s41586-023-06739-5

PMCID:: PMC10700138

Article PDF–20M

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Cross-linking mass spectrometric analysis of the endogenous TREX complex from Saccharomyces cerevisiae

Carina Kern, Christin Radon, Wolfgang Wende, Alexander Leitner, Katja Sträßer

RNA. 2023 Dec; 29(12): 1870–1880. doi: 10.1261/rna.079758.123

PMCID:: PMC10653388

Article PDF–13M

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ISW1a modulates cohesin distribution in centromeric and pericentromeric regions

Ireneusz Litwin, Małgorzata Nowicka, Katarzyna Markowska, Ewa Maciaszczyk-Dziubińska, Paulina Tomaszewska, Robert Wysocki, Karol Kramarz

Nucleic Acids Res. 2023 Sep 22; 51(17): 9101–9121. Published online 2023 Jul 24. doi: 10.1093/nar/gkad612

PMCID:: PMC10516642

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Nuclear mRNPs are compact particles packaged with a network of proteins promoting RNA–RNA interactions

Fabien Bonneau, Jérôme Basquin, Barbara Steigenberger, Tillman Schäfer, Ingmar B. Schäfer, Elena Conti

Genes Dev. 2023 Jun 1; 37(11-12): 505–517. doi: 10.1101/gad.350630.123

PMCID:: PMC10393194

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Rio1 downregulates centromeric RNA levels to promote the timely assembly of structurally fit kinetochores

Ksenia Smurova, Michela Damizia, Carmela Irene, Stefania Stancari, Giovanna Berto, Giulia Perticari, Maria Giuseppina Iacovella, Ilaria D’Ambrosio, Maria Giubettini, Réginald Philippe, Chiara Baggio, Elisabetta Callegaro, Andrea Casagranda, Alessandro Corsini, Vincenzo Gentile Polese, Anna Ricci, Erik Dassi, Peter De Wulf

Nat Commun. 2023; 14: 3172. Published online 2023 Jun 1. doi: 10.1038/s41467-023-38920-9

PMCID:: PMC10235086

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A role for the Saccharomyces cerevisiae Rtt109 histone acetyltransferase in R-loop homeostasis and associated genome instability

Juan Carlos Cañas, María Luisa García-Rubio, Alicia García, Francisco Antequera, Belén Gómez-González, Andrés Aguilera

Genetics. 2022 Sep; 222(1): iyac108. Published online 2022 Jul 22. doi: 10.1093/genetics/iyac108

PMCID:: PMC9434296

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New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources

Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry

Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224

PMCID:: PMC9209811

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The histone chaperone Spt6 is required for normal recruitment of the capping enzyme Abd1 to transcribed regions

Rajaraman Gopalakrishnan, Fred Winston

J Biol Chem. 2021 Oct; 297(4): 101205. Published online 2021 Sep 17. doi: 10.1016/j.jbc.2021.101205

PMCID:: PMC8511950

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Spt4 facilitates the movement of RNA polymerase II through the +2 nucleosomal barrier

Ülkü Uzun, Thomas Brown, Harry Fischl, Andrew Angel, Jane Mellor

Cell Rep. 2021 Sep 28; 36(13): 109755. Published online 2021 Sep 29. doi: 10.1016/j.celrep.2021.109755

PMCID:: PMC8492961

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Harmful R-loops are prevented via different cell cycle-specific mechanisms

Marta San Martin-Alonso, María E. Soler-Oliva, María García-Rubio, Tatiana García-Muse, Andrés Aguilera

Nat Commun. 2021; 12: 4451. Published online 2021 Jul 22. doi: 10.1038/s41467-021-24737-x

PMCID:: PMC8298424

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DNA-RNA hybrids at DSBs interfere with repair by homologous recombination

Pedro Ortega, José Antonio Mérida-Cerro, Ana G Rondón, Belén Gómez-González, Andrés Aguilera

eLife. 2021; 10: e69881. Published online 2021 Jul 8. doi: 10.7554/eLife.69881

PMCID:: PMC8289408

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R-loops at centromeric chromatin contribute to defects in kinetochore integrity and chromosomal instability in budding yeast

Prashant K. Mishra, Arijita Chakraborty, Elaine Yeh, Wenyi Feng, Kerry S. Bloom, Munira A. Basrai

Mol Biol Cell. 2021 Jan 1; 32(1): 74–89. doi: 10.1091/mbc.E20-06-0379

PMCID:: PMC8098821

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Cryo-EM structure of the yeast TREX complex and coordination with the SR-like protein Gbp2

Yihu Xie, Bradley P Clarke, Yong Joon Kim, Austin L Ivey, Pate S Hill, Yi Shi, Yi Ren

eLife. 2021; 10: e65699. Published online 2021 Mar 31. doi: 10.7554/eLife.65699

PMCID:: PMC8043747

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Purified Smc5/6 Complex Exhibits DNA Substrate Recognition and Compaction

Pilar Gutierrez-Escribano, Silvia Hormeño, Julene Madariaga-Marcos, Roger Solé-Soler, Francis J. O’Reilly, Kyle Morris, Clara Aicart-Ramos, Ricardo Aramayo, Alex Montoya, Holger Kramer, Juri Rappsilber, Jordi Torres-Rosell, Fernando Moreno-Herrero, Luis Aragon

Mol Cell. 2020 Dec 17; 80(6): 1039–1054.e6. doi: 10.1016/j.molcel.2020.11.012