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Select item 108724771.

Protein interaction network revealed by quantitative proteomic analysis links TFIIB to multiple aspects of the transcription cycle

Michael J. O’Brien, Athar Ansari

Biochim Biophys Acta Proteins Proteom. Author manuscript; available in PMC 2024 Feb 16.

Published in final edited form as: Biochim Biophys Acta Proteins Proteom. 2024 Jan 1; 1872(1): 140968. Published online 2023 Oct 19. doi: 10.1016/j.bbapap.2023.140968

PMCID:: PMC10872477

Abstract Article PDF–1.7M

Select item 107001382.

The social and structural architecture of the yeast protein interactome

André C. Michaelis, Andreas-David Brunner, Maximilian Zwiebel, Florian Meier, Maximilian T. Strauss, Isabell Bludau, Matthias Mann

Nature. 2023; 624(7990): 192–200. Published online 2023 Nov 15. doi: 10.1038/s41586-023-06739-5

PMCID:: PMC10700138

Abstract Article PDF–20M

Select item 105166423.

ISW1a modulates cohesin distribution in centromeric and pericentromeric regions

Ireneusz Litwin, Małgorzata Nowicka, Katarzyna Markowska, Ewa Maciaszczyk-Dziubińska, Paulina Tomaszewska, Robert Wysocki, Karol Kramarz

Nucleic Acids Res. 2023 Sep 22; 51(17): 9101–9121. Published online 2023 Jul 24. doi: 10.1093/nar/gkad612

PMCID:: PMC10516642

Abstract Article PDF–2.8M

Select item 101420534.

Ribosomal DNA replication time coordinates completion of genome replication and anaphase in yeast

Elizabeth X. Kwan, Gina M. Alvino, Kelsey L. Lynch, Paula F. Levan, Haley M. Amemiya, Xiaobin S. Wang, Sarah A. Johnson, Joseph C. Sanchez, Madison A. Miller, Mackenzie Croy, Seung-been Lee, Maria Naushab, Antonio Bedalov, Josh T. Cuperus, Bonita J. Brewer, Christine Queitsch, M.K. Raghuraman

Cell Rep. Author manuscript; available in PMC 2023 Apr 28.

Published in final edited form as: Cell Rep. 2023 Mar 28; 42(3): 112161. Published online 2023 Feb 25. doi: 10.1016/j.celrep.2023.112161

PMCID:: PMC10142053

Abstract Article PDF–3.1M

Select item 101326185.

Fob1-dependent condensin recruitment and loop extrusion on yeast chromosome III

Manikarna Dinda, Ryan D. Fine, Shekhar Saha, Zhenjia Wang, Chongzhi Zang, Mingguang Li, Jeffrey S. Smith

PLoS Genet. 2023 Apr; 19(4): e1010705. Published online 2023 Apr 14. doi: 10.1371/journal.pgen.1010705

PMCID:: PMC10132618

Abstract Article PDF–3.5M

Select item 95787006.

Age-dependent aggregation of ribosomal RNA-binding proteins links deterioration in chromatin stability with challenges to proteostasis

Julie Paxman, Zhen Zhou, Richard O'Laughlin, Yuting Liu, Yang Li, Wanying Tian, Hetian Su, Yanfei Jiang, Shayna E Holness, Elizabeth Stasiowski, Lev S Tsimring, Lorraine Pillus, Jeff Hasty, Nan Hao

eLife. 2022; 11: e75978. Published online 2022 Oct 4. doi: 10.7554/eLife.75978

PMCID:: PMC9578700

Abstract Article PDF–4.3M

Select item 92860237.

Mediator recruits the cohesin loader Scc2 to RNA Pol II-transcribed genes and promotes sister chromatid cohesion

Mark Mattingly, Chris Seidel, Sofía Muñoz, Yan Hao, Ying Zhang, Zhihui Wen, Laurence Florens, Frank Uhlmann, Jennifer L. Gerton

Curr Biol. 2022 Jul 11; 32(13): 2884–2896.e6. doi: 10.1016/j.cub.2022.05.019

PMCID:: PMC9286023

Abstract Article

Select item 92098118.

New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources

Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry

Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224

PMCID:: PMC9209811

Abstract Article PDF–818K

Select item 91191189.

RPS12 and UBC4 Are Related to Senescence Signal Production in the Ribosomal RNA Gene Cluster

Shuichi Yanagi, Tetsushi Iida, Takehiko Kobayashi

Mol Cell Biol. 2022 May; 42(5): e00028-22. Published online 2022 Apr 6. doi: 10.1128/mcb.00028-22

PMCID:: PMC9119118

Abstract Article PDF–2.9M

Select item 900791710.

Identification of 14-3-3 Proteins, Polo kinase, and RNA-binding protein Pes4 as Key Regulators of Meiotic Commitment in Budding Yeast

Janardan N. Gavade, Chris M. Puccia, S. Grace Herod, Jonathan C. Trinidad, Luke E. Berchowitz, Soni Lacefield

Curr Biol. Author manuscript; available in PMC 2023 Apr 11.

Published in final edited form as: Curr Biol. 2022 Apr 11; 32(7): 1534–1547.e9. Published online 2022 Mar 2. doi: 10.1016/j.cub.2022.02.022

PMCID:: PMC9007917

Abstract Article PDF–2.2M

Select item 834475911.

A nuclear proteome localization screen reveals the exquisite specificity of Gpn2 in RNA polymerase biogenesis

Sean W. Minaker, Megan C. Kofoed, Philip Hieter, Peter C. Stirling

Cell Cycle. 2021; 20(14): 1361–1373. Published online 2021 Jun 28. doi: 10.1080/15384101.2021.1943879

PMCID:: PMC8344759

Abstract Article PDF–4.4M

Select item 820879112.

Smc5/6 in the rDNA modulates lifespan independently of Fob1

Sarah Moradi‐Fard, Aditya Mojumdar, Megan Chan, Troy A.A. Harkness, Jennifer A. Cobb

Aging Cell. 2021 Jun; 20(6): e13373. Published online 2021 May 12. doi: 10.1111/acel.13373

PMCID:: PMC8208791

Abstract Article PDF–2.3M

Select item 808826613.

The S-Phase Cyclin Clb5 Promotes rRNA Gene (rDNA) Stability by Maintaining Replication Initiation Efficiency in rDNA

Mayuko Goto, Mariko Sasaki, Takehiko Kobayashi

Mol Cell Biol. 2021 May; 41(5): e00324-20. Prepublished online 2021 Feb 22. Published online 2021 Apr 22. doi: 10.1128/MCB.00324-20

PMCID:: PMC8088266

Abstract Article PDF–8.2M

Select item 802119814.

Genome-wide analysis of DNA replication and DNA double-strand breaks using TrAEL-seq

Neesha Kara, Felix Krueger, Peter Rugg-Gunn, Jonathan Houseley

PLoS Biol. 2021 Mar; 19(3): e3000886. Published online 2021 Mar 24. doi: 10.1371/journal.pbio.3000886

PMCID:: PMC8021198

Abstract Article PDF–3.2M

Select item 801257315.

Inactivating histone deacetylase HDA promotes longevity by mobilizing trehalose metabolism

Ruofan Yu, Xiaohua Cao, Luyang Sun, Jun-yi Zhu, Brian M Wasko, Wei Liu, Emeline Crutcher, Haiying Liu, Myeong Chan Jo, Lidong Qin, Matt Kaeberlein, Zhe Han, Weiwei Dang

Nat Commun. 2021; 12: 1981. Published online 2021 Mar 31. doi: 10.1038/s41467-021-22257-2