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Items: 1 to 20 of 48

1.
A systematic proximity ligation approach to studying protein‐substrate specificity identifies the substrate spectrum of the Ssh1 translocon
Nir Cohen, Naama Aviram, Maya Schuldiner
EMBO J. 2023 Jun; 42(11): e113385. Published online 2023 Apr 19. doi: 10.15252/embj.2022113385
PMCID:
PMC10233368
AbstractArticlePDF–1.2M
2.
A balancing act: interactions within NuA4/TIP60 regulate picNuA4 function in Saccharomyces cerevisiae and humans
Phoebe Y T Lu, Alyssa C Kirlin, Maria J Aristizabal, Hilary T Brewis, Nancy Lévesque, Dheva T Setiaputra, Nikita Avvakumov, Joris J Benschop, Marian Groot Koerkamp, Frank C P Holstege, Nevan J Krogan, Calvin K Yip, Jacques Côté, Michael S Kobor
Genetics. 2022 Nov; 222(3): iyac136. Published online 2022 Sep 6. doi: 10.1093/genetics/iyac136
PMCID:
PMC9630986
AbstractArticlePDF–2.2M
3.
New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources
Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry
Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224
PMCID:
PMC9209811
AbstractArticlePDF–818K
4.
Identifying Interaction Partners of Yeast Protein Disulfide Isomerases Using a Small Thiol-Reactive Cross-Linker: Implications for Secretory Pathway Proteostasis
Benjamin J. Freije, Wilson M. Freije, To Uyen Do, Grace E. Adkins, Alexander Bruch, Jennifer E. Hurtig, Kevin A. Morano, Raffael Schaffrath, James D. West
Chem Res Toxicol. Author manuscript; available in PMC 2023 Feb 21.
Published in final edited form as: Chem Res Toxicol. 2022 Feb 21; 35(2): 326–336. Published online 2022 Jan 27. doi: 10.1021/acs.chemrestox.1c00376
PMCID:
PMC8860869
AbstractArticlePDF–1.2M
5.
Cytotoxicity of Oleandrin Is Mediated by Calcium Influx and by Increased Manganese Uptake in Saccharomyces cerevisiae Cells
Lavinia L. Ruta, Claudia V. Popa, Ileana C. Farcasanu
Molecules. 2020 Sep; 25(18): 4259. Published online 2020 Sep 17. doi: 10.3390/molecules25184259
PMCID:
PMC7570853
AbstractArticlePDF–2.1M
6.
Highly conserved extracellular residues mediate interactions between pore-forming and regulatory subunits of the yeast Ca2+ channel related to the animal VGCC/NALCN family
Takuto Hayashi, Keita Oishi, Midori Kimura, Kazuko Iida, Hidetoshi Iida
J Biol Chem. 2020 Sep 11; 295(37): 13008–13022. Published online 2020 Jul 20. doi: 10.1074/jbc.RA120.014378
PMCID:
PMC7489899
AbstractArticlePDF–3.9M
7.
The ER-associated protease Ste24 prevents N-terminal signal peptide-independent translocation into the endoplasmic reticulum in Saccharomyces cerevisiae
Akira Hosomi, Kazuko Iida, Toshihiko Cho, Hidetoshi Iida, Masashi Kaneko, Tadashi Suzuki
J Biol Chem. 2020 Jul 24; 295(30): 10406–10419. Published online 2020 Jun 8. doi: 10.1074/jbc.RA120.012575
PMCID:
PMC7383372
AbstractArticlePDF–2.2M
8.
A genetic interaction map centered on cohesin reveals auxiliary factors involved in sister chromatid cohesion in S. cerevisiae
Su Ming Sun, Amandine Batté, Mireille Elmer, Sophie C. van der Horst, Tibor van Welsem, Gordon Bean, Trey Ideker, Fred van Leeuwen, Haico van Attikum
J Cell Sci. 2020 May 15; 133(10): jcs237628. Published online 2020 May 22. doi: 10.1242/jcs.237628
PMCID:
PMC7325435
AbstractArticle
9.
Rad5 dysregulation drives hyperactive recombination at replication forks resulting in cisplatin sensitivity and genome instability
Eric E Bryant, Ivana Šunjevarić, Luke Berchowitz, Rodney Rothstein, Robert J D Reid
Nucleic Acids Res. 2019 Sep 26; 47(17): 9144–9159. Published online 2019 Jul 27. doi: 10.1093/nar/gkz631
PMCID:
PMC6753471
AbstractArticlePDF–6.0M
10.
Cdc73 suppresses genome instability by mediating telomere homeostasis
Rahul V. Nene, Christopher D. Putnam, Bin-Zhong Li, Katarina G. Nguyen, Anjana Srivatsan, Christopher S. Campbell, Arshad Desai, Richard D. Kolodner
PLoS Genet. 2018 Jan; 14(1): e1007170. Published online 2018 Jan 10. doi: 10.1371/journal.pgen.1007170
PMCID:
PMC5779705
AbstractArticlePDF–21M
11.
Protein kinase C and calcineurin cooperatively mediate cell survival under compressive mechanical stress
Ranjan Mishra, Frank van Drogen, Reinhard Dechant, Soojung Oh, Noo Li Jeon, Sung Sik Lee, Matthias Peter
Proc Natl Acad Sci U S A. 2017 Dec 19; 114(51): 13471–13476. Published online 2017 Dec 1. doi: 10.1073/pnas.1709079114
PMCID:
PMC5754771
AbstractArticlePDF–1.0M
12.
Post-translational processing and membrane translocation of the yeast regulatory Mid1 subunit of the Cch1/VGCC/NALCN cation channel family
Kazuko Iida, Jinfeng Teng, Toshihiko Cho, Sato Yoshikawa-Kimura, Hidetoshi Iida
J Biol Chem. 2017 Dec 15; 292(50): 20570–20582. Published online 2017 Oct 17. doi: 10.1074/jbc.M117.810283
PMCID:
PMC5733593
AbstractArticlePDF–2.2M
13.
A global interaction network maps a wiring diagram of cellular function
Michael Costanzo, Benjamin VanderSluis, Elizabeth N. Koch, Anastasia Baryshnikova, Carles Pons, Guihong Tan, Wen Wang, Matej Usaj, Julia Hanchard, Susan D. Lee, Vicent Pelechano, Erin B. Styles, Maximilian Billmann, Jolanda van Leeuwen, Nydia van Dyk, Zhen-Yuan Lin, Elena Kuzmin, Justin Nelson, Jeff S. Piotrowski, Tharan Srikumar, Sondra Bahr, Yiqun Chen, Raamesh Deshpande, Christoph F. Kurat, Sheena C. Li, Zhijian Li, Mojca Mattiazzi Usaj, Hiroki Okada, Natasha Pascoe, Bryan-Joseph San Luis, Sara Sharifpoor, Emira Shuteriqi, Scott W. Simpkins, Jamie Snider, Harsha Garadi Suresh, Yizhao Tan, Hongwei Zhu, Noel Malod-Dognin, Vuk Janjic, Natasa Przulj, Olga G. Troyanskaya, Igor Stagljar, Tian Xia, Yoshikazu Ohya, Anne-Claude Gingras, Brian Raught, Michael Boutros, Lars M. Steinmetz, Claire L. Moore, Adam P. Rosebrock, Amy A. Caudy, Chad L. Myers, Brenda Andrews, Charles Boone
Science. Author manuscript; available in PMC 2017 Oct 30.
Published in final edited form as: Science. 2016 Sep 23; 353(6306): aaf1420. doi: 10.1126/science.aaf1420
PMCID:
PMC5661885
AbstractArticlePDF–2.6M
14.
The Genetic Landscape of a Cell
Michael Costanzo, Anastasia Baryshnikova, Jeremy Bellay, Yungil Kim, Eric D. Spear, Carolyn S. Sevier, Huiming Ding, Judice L.Y. Koh, Kiana Toufighi, Sara Mostafavi, Jeany Prinz, Robert P. St. Onge, Benjamin VanderSluis, Taras Makhnevych, Franco J. Vizeacoumar, Solmaz Alizadeh, Sondra Bahr, Renee L. Brost, Yiqun Chen, Murat Cokol, Raamesh Deshpande, Zhijian Li, Zhen-Yuan Lin, Wendy Liang, Michaela Marback, Jadine Paw, Bryan-Joseph San Luis, Ermira Shuteriqi, Amy Hin Yan Tong, Nydia van Dyk, Iain M. Wallace, Joseph A. Whitney, Matthew T. Weirauch, Guoqing Zhong, Hongwei Zhu, Walid A. Houry, Michael Brudno, Sasan Ragibizadeh, Balázs Papp, Csaba Pál, Frederick P. Roth, Guri Giaever, Corey Nislow, Olga G. Troyanskaya, Howard Bussey, Gary D. Bader, Anne-Claude Gingras, Quaid D. Morris, Philip M. Kim, Chris A. Kaiser, Chad L. Myers, Brenda J. Andrews, Charles Boone
Science. Author manuscript; available in PMC 2017 Sep 15.
Published in final edited form as: Science. 2010 Jan 22; 327(5964): 425–431. doi: 10.1126/science.1180823
PMCID:
PMC5600254
AbstractArticlePDF–2.4M
15.
Sexual pheromone modulates the frequency of cytosolic Ca2+ bursts in Saccharomyces cerevisiae
Natalia Carbó, Nahuel Tarkowski, Emiliano Perez Ipiña, Silvina Ponce Dawson, Pablo S. Aguilar
Mol Biol Cell. 2017 Feb 15; 28(4): 501–510. doi: 10.1091/mbc.E16-07-0481
PMCID:
PMC5305257
AbstractArticlePDF–2.8M
16.
Calcium channel regulator Mid1 links TORC2-mediated changes in mitochondrial respiration to autophagy
Ariadne Vlahakis, Nerea Lopez Muniozguren, Ted Powers
J Cell Biol. 2016 Dec 19; 215(6): 779–788. doi: 10.1083/jcb.201605030
PMCID:
PMC5166500
AbstractArticlePDF–1.6M
17.
Functional Metabolomics Describes the Yeast Biosynthetic Regulome
Michael Mülleder, Enrica Calvani, Mohammad Tauqeer Alam, Richard Kangda Wang, Florian Eckerstorfer, Aleksej Zelezniak, Markus Ralser
Cell. 2016 Oct 6; 167(2): 553–565.e12. doi: 10.1016/j.cell.2016.09.007
PMCID:
PMC5055083
AbstractArticlePDF–3.9M
18.
Protein-RNA networks revealed through covalent RNA marks
Christopher P. Lapointe, Daniel Wilinski, Harriet A. J. Saunders, Marvin Wickens
Nat Methods. Author manuscript; available in PMC 2016 May 18.
Published in final edited form as: Nat Methods. 2015 Dec; 12(12): 1163–1170. Published online 2015 Nov 2. doi: 10.1038/nmeth.3651
PMCID:
PMC4707952
AbstractArticlePDF–856K
19.
Wide-Ranging Effects of the Yeast Ptc1 Protein Phosphatase Acting Through the MAPK Kinase Mkk1
Laura Tatjer, Almudena Sacristán-Reviriego, Carlos Casado, Asier González, Boris Rodríguez-Porrata, Lorena Palacios, David Canadell, Albert Serra-Cardona, Humberto Martín, María Molina, Joaquín Ariño
Genetics. 2016 Jan; 202(1): 141–156. Published online 2015 Nov 5. doi: 10.1534/genetics.115.183202
PMCID:
PMC4701081
AbstractArticlePDF–5.1M
20.
Genetic Networks Required to Coordinate Chromosome Replication by DNA Polymerases α, δ, and ε in Saccharomyces cerevisiae
Marion Dubarry, Conor Lawless, A. Peter Banks, Simon Cockell, David Lydall
G3 (Bethesda) 2015 Oct; 5(10): 2187–2197. Published online 2015 Aug 21. doi: 10.1534/g3.115.021493
PMCID:
PMC4593000
AbstractArticlePDF–1.8M

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