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Select item 108724771.

Protein interaction network revealed by quantitative proteomic analysis links TFIIB to multiple aspects of the transcription cycle

Michael J. O’Brien, Athar Ansari

Biochim Biophys Acta Proteins Proteom. Author manuscript; available in PMC 2024 Feb 16.

Published in final edited form as: Biochim Biophys Acta Proteins Proteom. 2024 Jan 1; 1872(1): 140968. Published online 2023 Oct 19. doi: 10.1016/j.bbapap.2023.140968

PMCID:: PMC10872477

Abstract Article PDF–1.7M

Select item 105211372.

Checkpoint kinase interaction with DNA polymerase alpha regulates replication progression during stress

Andreas Hadjicharalambous, Alex J. Whale, Geylani Can, J. Mark Skehel, Jonathan M. Houseley, Philip Zegerman

Version 1. Wellcome Open Res. 2023; 8: 327. Published online 2023 Jul 26. doi: 10.12688/wellcomeopenres.19617.1

PMCID:: PMC10521137

Abstract Article PDF–4.0M

Select item 105166423.

ISW1a modulates cohesin distribution in centromeric and pericentromeric regions

Ireneusz Litwin, Małgorzata Nowicka, Katarzyna Markowska, Ewa Maciaszczyk-Dziubińska, Paulina Tomaszewska, Robert Wysocki, Karol Kramarz

Nucleic Acids Res. 2023 Sep 22; 51(17): 9101–9121. Published online 2023 Jul 24. doi: 10.1093/nar/gkad612

PMCID:: PMC10516642

Abstract Article PDF–2.8M

Select item 103819654.

Cryo-EM structure of the complete inner kinetochore of the budding yeast point centromere

Tom Dendooven, Ziguo Zhang, Jing Yang, Stephen H. McLaughlin, Johannes Schwab, Sjors H. W. Scheres, Stanislau Yatskevich, David Barford

Sci Adv. 2023 Jul; 9(30): eadg7480. Published online 2023 Jul 28. doi: 10.1126/sciadv.adg7480

PMCID:: PMC10381965

Abstract Article PDF–2.1M

Select item 102350865.

Rio1 downregulates centromeric RNA levels to promote the timely assembly of structurally fit kinetochores

Ksenia Smurova, Michela Damizia, Carmela Irene, Stefania Stancari, Giovanna Berto, Giulia Perticari, Maria Giuseppina Iacovella, Ilaria D’Ambrosio, Maria Giubettini, Réginald Philippe, Chiara Baggio, Elisabetta Callegaro, Andrea Casagranda, Alessandro Corsini, Vincenzo Gentile Polese, Anna Ricci, Erik Dassi, Peter De Wulf

Nat Commun. 2023; 14: 3172. Published online 2023 Jun 1. doi: 10.1038/s41467-023-38920-9

PMCID:: PMC10235086

Abstract Article PDF–2.6M

Select item 96733526.

A proteomic screen of Ty1 integrase partners identifies the protein kinase CK2 as a regulator of Ty1 retrotransposition

Anastasia Barkova, Indranil Adhya, Christine Conesa, Amna Asif-Laidin, Amandine Bonnet, Elise Rabut, Carine Chagneau, Pascale Lesage, Joël Acker

Mob DNA. 2022; 13: 26. Published online 2022 Nov 18. doi: 10.1186/s13100-022-00284-0

PMCID:: PMC9673352

Abstract Article PDF–2.6M

Select item 92098117.

New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources

Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry

Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224

PMCID:: PMC9209811

Abstract Article PDF–818K

Select item 88527208.

Reb1, Cbf1, and Pho4 Bias Histone Sliding and Deposition Away from Their Binding Sites

Samaneh Ghassabi Kondalaji, Gregory D. Bowman

Mol Cell Biol. 2022 Feb; 42(2): e00472-21. Prepublished online 2021 Dec 13. Published online 2022 Feb 17. doi: 10.1128/mcb.00472-21

PMCID:: PMC8852720

Abstract Article PDF–5.8M

Select item 85119509.

The histone chaperone Spt6 is required for normal recruitment of the capping enzyme Abd1 to transcribed regions

Rajaraman Gopalakrishnan, Fred Winston

J Biol Chem. 2021 Oct; 297(4): 101205. Published online 2021 Sep 17. doi: 10.1016/j.jbc.2021.101205

PMCID:: PMC8511950

Abstract Article PDF–3.1M

Select item 825685910.

Competition for DNA binding between paralogous transcription factors determines their genomic occupancy and regulatory functions

Yuning Zhang, Tiffany D. Ho, Nicolas E. Buchler, Raluca Gordân

Genome Res. 2021 Jul; 31(7): 1216–1229. doi: 10.1101/gr.275145.120

PMCID:: PMC8256859

Abstract Article PDF–3.5M

Select item 712446611.

Improving Identification of In-organello Protein-Protein Interactions Using an Affinity-enrichable, Isotopically Coded, and Mass Spectrometry-cleavable Chemical Crosslinker

Karl A. T. Makepeace, Yassene Mohammed, Elena L. Rudashevskaya, Evgeniy V. Petrotchenko, F.-Nora Vögtle, Chris Meisinger, Albert Sickmann, Christoph H. Borchers

Mol Cell Proteomics. 2020 Apr; 19(4): 624–639. Published online 2020 Feb 12. doi: 10.1074/mcp.RA119.001839

PMCID:: PMC7124466

Abstract Article PDF–7.8M

Select item 707185412.

The ATAD2/ANCCA homolog Yta7 cooperates with Scm3^HJURP to deposit Cse4^CENP-A at the centromere in yeast

Sara Shahnejat-Bushehri, Ann E. Ehrenhofer-Murray

Proc Natl Acad Sci U S A. 2020 Mar 10; 117(10): 5386–5393. Published online 2020 Feb 20. doi: 10.1073/pnas.1917814117

PMCID:: PMC7071854

Abstract Article PDF–1.1M

Select item 679201913.

The Sir4 H‐BRCT domain interacts with phospho‐proteins to sequester and repress yeast heterochromatin

Ishan Deshpande, Jeremy J Keusch, Kiran Challa, Vytautas Iesmantavicius, Susan M Gasser, Heinz Gut

EMBO J. 2019 Oct 15; 38(20): e101744. Published online 2019 Sep 12. doi: 10.15252/embj.2019101744

Correction in:: EMBO J. 2020 Jan 2; 39(1): e103976.

PMCID:: PMC6792019

Abstract Article PDF–2.0M

Select item 678189514.

Saccharomyces cerevisiae Centromere RNA Is Negatively Regulated by Cbf1 and Its Unscheduled Synthesis Impacts CenH3 Binding

Chi-Fu Chen, Thomas J. Pohl, Angela Chan, Joshua S. Slocum, Virginia A. Zakian

Genetics. 2019 Oct; 213(2): 465–479. Published online 2019 Aug 7. doi: 10.1534/genetics.119.302528

PMCID:: PMC6781895

Abstract Article PDF–2.3M

Select item 668997715.

Homotypic cooperativity and collective binding are determinants of bHLH specificity and function

Christian A. Shively, Jiayue Liu, Xuhua Chen, Kaiser Loell, Robi D. Mitra

Proc Natl Acad Sci U S A. 2019 Aug 6; 116(32): 16143–16152. Published online 2019 Jul 24. doi: 10.1073/pnas.1818015116

PMCID:: PMC6689977

Abstract Article PDF–1.8M

Select item 644909016.

Dissociation rate compensation mechanism for budding yeast pioneer transcription factors

Benjamin T Donovan, Hengye Chen, Caroline Jipa, Lu Bai, Michael G Poirier

eLife. 2019; 8: e43008. Published online 2019 Mar 19. doi: 10.7554/eLife.43008

PMCID:: PMC6449090

Abstract Article PDF–2.1M

Select item 644262817.

Point centromere activity requires an optimal level of centromeric noncoding RNA

Yick Hin Ling, Karen Wing Yee Yuen

Proc Natl Acad Sci U S A. 2019 Mar 26; 116(13): 6270–6279. Published online 2019 Mar 8. doi: 10.1073/pnas.1821384116

PMCID:: PMC6442628

Abstract Article PDF–1.3M

Select item 632591418.

The Regulation of Cbf1 by PAS Kinase Is a Pivotal Control Point for Lipogenesis vs. Respiration in Saccharomyces cerevisiae

Desiree DeMille, Jenny A. Pape, Benjamin T. Bikman, Majid Ghassemian, Julianne H. Grose

G3 (Bethesda) 2019 Jan; 9(1): 33–46. Published online 2018 Oct 31. doi: 10.1534/g3.118.200663

PMCID:: PMC6325914

Abstract Article PDF–2.0M

Select item 632570719.

Two Pif1 Family DNA Helicases Cooperate in Centromere Replication and Segregation in Saccharomyces cerevisiae

Chi-Fu Chen, Thomas J. Pohl, Sebastian Pott, Virginia A. Zakian

Genetics. 2019 Jan; 211(1): 105–119. Published online 2018 Nov 15. doi: 10.1534/genetics.118.301710

PMCID:: PMC6325707

Abstract Article PDF–2.1M

Select item 631529520.

The kinetochore module Okp1^CENP‐Q/Ame1^CENP‐U is a reader for N‐terminal modifications on the centromeric histone Cse4^CENP‐A

Ekaterina A Anedchenko, Anke Samel‐Pommerencke, Tra My Tran Nguyen, Sara Shahnejat‐Bushehri, Juliane Pöpsel, Daniel Lauster, Andreas Herrmann, Juri Rappsilber, Alessandro Cuomo, Tiziana Bonaldi, Ann E Ehrenhofer‐Murray

EMBO J. 2019 Jan 3; 38(1): e98991. Published online 2018 Nov 2. doi: 10.15252/embj.201898991