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Items: 1 to 20 of 33

1.
An RNAi screen to identify proteins required for cohesion rejuvenation during meiotic prophase in Drosophila oocytes
Muhammad A Haseeb, Alana C Bernys, Erin E Dickert, Sharon E Bickel
G3 (Bethesda) 2024 Aug; 14(8): jkae123. Published online 2024 Jun 8. doi: 10.1093/g3journal/jkae123
PMCID:
PMC11304968
AbstractArticlePDF–830K
2.
Growth deregulation and interaction with host hemocytes contribute to tumor progression in a Drosophila brain tumor model
Chrysanthi Voutyraki, Alexandros Choromidis, Anastasia Meligkounaki, Nikolaos Andreas Vlachopoulos, Vasiliki Theodorou, Sofia Grammenoudi, Emmanouil Athanasiadis, Sara Monticelli, Angela Giangrande, Christos Delidakis, Evanthia Zacharioudaki
Proc Natl Acad Sci U S A. 2023 Aug 15; 120(33): e2221601120. Published online 2023 Aug 7. doi: 10.1073/pnas.2221601120
PMCID:
PMC10438840
AbstractArticlePDF–4.3M
3.
Histone H3.3 K27M and K36M mutations de-repress transposable elements through perturbation of antagonistic chromatin marks
Amel Chaouch, Johannes Berlandi, Carol CL Chen, Felice Frey, Shireen Badini, Ashot S. Harutyunyan, Xiao Chen, Brian Krug, Steven Hébert, Astrid Jeibmann, Chao Lu, Claudia L. Kleinman, Martin Hasselblatt, Paul Lasko, Margret Shirinian, Nada Jabado
Mol Cell. Author manuscript; available in PMC 2023 Mar 7.
Published in final edited form as: Mol Cell. 2021 Dec 2; 81(23): 4876–4890.e7. Published online 2021 Nov 4. doi: 10.1016/j.molcel.2021.10.008
PMCID:
PMC9990445
AbstractArticlePDF–3.1M
4.
The Tudor Domain-Containing Protein, Kotsubu (CG9925), Localizes to the Nuage and Functions in piRNA Biogenesis in D. melanogaster
Lin-Xenia Lim, Wakana Isshiki, Taichiro Iki, Shinichi Kawaguchi, Toshie Kai
Front Mol Biosci. 2022; 9: 818302. Published online 2022 Mar 29. doi: 10.3389/fmolb.2022.818302
PMCID:
PMC9002060
AbstractArticlePDF–2.6M
5.
Mutations in the K+/Cl− Cotransporter Gene kazachoc (kcc) Increase Seizure Susceptibility in Drosophila
Daria S. Hekmat-Scafe, Miriam Y. Lundy, Rakhee Ranga, Mark A. Tanouye
J Neurosci. 2006 Aug 30; 26(35): 8943–8954. doi: 10.1523/JNEUROSCI.4998-05.2006
PMCID:
PMC6675325
AbstractArticlePDF–692K
6.
Landscape and evolution of tissue-specific alternative polyadenylation across Drosophila species
Piero Sanfilippo, Jiayu Wen, Eric C. Lai
Genome Biol. 2017; 18: 229. Published online 2017 Nov 30. doi: 10.1186/s13059-017-1358-0
PMCID:
PMC5707805
AbstractArticlePDF–3.2M
7.
Transcription elongation rate has a tissue-specific impact on alternative cleavage and polyadenylation in Drosophila melanogaster
Xiaochuan Liu, Jaime Freitas, Dinghai Zheng, Marta S. Oliveira, Mainul Hoque, Torcato Martins, Telmo Henriques, Bin Tian, Alexandra Moreira
RNA. 2017 Dec; 23(12): 1807–1816. doi: 10.1261/rna.062661.117
PMCID:
PMC5689002
AbstractArticlePDF–4.0M
8.
mRNA-Associated Processes and Their Influence on Exon-Intron Structure in Drosophila melanogaster
Gildas Lepennetier, Francesco Catania
G3 (Bethesda) 2016 Jun; 6(6): 1617–1626. Published online 2016 Mar 28. doi: 10.1534/g3.116.029231
PMCID:
PMC4889658
AbstractArticlePDF–1.5M
9.
Hedgehog Signaling Strength Is Orchestrated by the mir-310 Cluster of MicroRNAs in Response to Diet
Ibrahim Ömer Çiçek, Samir Karaca, Marko Brankatschk, Suzanne Eaton, Henning Urlaub, Halyna R. Shcherbata
Genetics. 2016 Mar; 202(3): 1167–1183. Published online 2016 Jan 22. doi: 10.1534/genetics.115.185371
PMCID:
PMC4788116
AbstractArticlePDF–4.7M
10.
Gene Model Annotations for Drosophila melanogaster: The Rule-Benders
Madeline A. Crosby, L. Sian Gramates, Gilberto dos Santos, Beverley B. Matthews, Susan E. St. Pierre, Pinglei Zhou, Andrew J. Schroeder, Kathleen Falls, David B. Emmert, Susan M. Russo, William M. Gelbart, the FlyBase Consortium
G3 (Bethesda) 2015 Aug; 5(8): 1737–1749. Published online 2015 Jun 24. doi: 10.1534/g3.115.018937
PMCID:
PMC4528330
AbstractArticlePDF–2.2M
11.
Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data
Beverley B. Matthews, Gilberto dos Santos, Madeline A. Crosby, David B. Emmert, Susan E. St. Pierre, L. Sian Gramates, Pinglei Zhou, Andrew J. Schroeder, Kathleen Falls, Victor Strelets, Susan M. Russo, William M. Gelbart, the FlyBase Consortium
G3 (Bethesda) 2015 Aug; 5(8): 1721–1736. Published online 2015 Jun 24. doi: 10.1534/g3.115.018929
PMCID:
PMC4528329
AbstractArticlePDF–4.9M
12.
oskar RNA plays multiple noncoding roles to support oogenesis and maintain integrity of the germline/soma distinction
Matt Kanke, Helena Jambor, John Reich, Brittany Marches, Ronald Gstir, Young Hee Ryu, Anne Ephrussi, Paul M. Macdonald
RNA. 2015 Jun; 21(6): 1096–1109. doi: 10.1261/rna.048298.114
PMCID:
PMC4436663
AbstractArticlePDF–661K
13.
The Release 6 reference sequence of the Drosophila melanogaster genome
Roger A. Hoskins, Joseph W. Carlson, Kenneth H. Wan, Soo Park, Ivonne Mendez, Samuel E. Galle, Benjamin W. Booth, Barret D. Pfeiffer, Reed A. George, Robert Svirskas, Martin Krzywinski, Jacqueline Schein, Maria Carmela Accardo, Elisabetta Damia, Giovanni Messina, María Méndez-Lago, Beatriz de Pablos, Olga V. Demakova, Evgeniya N. Andreyeva, Lidiya V. Boldyreva, Marco Marra, A. Bernardo Carvalho, Patrizio Dimitri, Alfredo Villasante, Igor F. Zhimulev, Gerald M. Rubin, Gary H. Karpen, Susan E. Celniker
Genome Res. 2015 Mar; 25(3): 445–458. doi: 10.1101/gr.185579.114
PMCID:
PMC4352887
AbstractArticlePDF–1022K
14.
Phylostratigraphic Bias Creates Spurious Patterns of Genome Evolution
Bryan A. Moyers, Jianzhi Zhang
Mol Biol Evol. 2015 Jan 1; 32(1): 258–267. Published online 2014 Oct 13. doi: 10.1093/molbev/msu286
Correction in:
Mol Biol Evol. 2016 Nov; 33(11): 3031.
PMCID:
PMC4271527
AbstractArticlePDF–618K
15.
The Genetic Makeup of the Drosophila piRNA Pathway
Dominik Handler, Katharina Meixner, Manfred Pizka, Kathrin Lauss, Christopher Schmied, Franz Sebastian Gruber, Julius Brennecke
Mol Cell. 2013 Jun 6; 50(5): 762–777. doi: 10.1016/j.molcel.2013.04.031
PMCID:
PMC3679447
AbstractArticle
16.
High-fidelity promoter profiling reveals widespread alternative promoter usage and transposon-driven developmental gene expression
Philippe Batut, Alexander Dobin, Charles Plessy, Piero Carninci, Thomas R. Gingeras
Genome Res. 2013 Jan; 23(1): 169–180. doi: 10.1101/gr.139618.112
PMCID:
PMC3530677
AbstractArticlePDF–1.5M
17.
The Many Landscapes of Recombination in Drosophila melanogaster
Josep M. Comeron, Ramesh Ratnappan, Samuel Bailin
PLoS Genet. 2012 Oct; 8(10): e1002905. Published online 2012 Oct 11. doi: 10.1371/journal.pgen.1002905
PMCID:
PMC3469467
AbstractArticlePDF–1.6M
18.
Fine scale analysis of gene expression in Drosophila melanogaster gonads reveals Programmed cell death 4 promotes the differentiation of female germline stem cells
Amy C Cash, Justen Andrews
BMC Dev Biol. 2012; 12: 4. Published online 2012 Jan 17. doi: 10.1186/1471-213X-12-4
PMCID:
PMC3322342
AbstractArticlePDF–15M
19.
A systematic analysis of Drosophila TUDOR domain-containing proteins identifies Vreteno and the Tdrd12 family as essential primary piRNA pathway factors
Dominik Handler, Daniel Olivieri, Maria Novatchkova, Franz Sebastian Gruber, Katharina Meixner, Karl Mechtler, Alexander Stark, Ravi Sachidanandam, Julius Brennecke
EMBO J. 2011 Oct 5; 30(19): 3977–3993. Published online 2011 Aug 23. doi: 10.1038/emboj.2011.308
PMCID:
PMC3209783
AbstractArticlePDF–2.6M
20.
Intron retention in the Drosophila melanogaster Rieske iron sulphur protein gene generated a new protein
Alisson M. Gontijo, Veronica Miguela, Michael F. Whiting, R.C. Woodruff, Maria Dominguez
Nat Commun. 2011 May; 2: 323. Published online 2011 May 24. doi: 10.1038/ncomms1328
PMCID:
PMC3113295
AbstractArticlePDF–1.9M

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