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Items: 1 to 20 of 22

1.
Genetic determinants of micronucleus formation in vivo
D. J. Adams, B. Barlas, R. E. McIntyre, I. Salguero, L. van der Weyden, A. Barros, J. R. Vicente, N. Karimpour, A. Haider, M. Ranzani, G. Turner, N. A. Thompson, V. Harle, R. Olvera-León, C. D. Robles-Espinoza, A. O. Speak, N. Geisler, W. J. Weninger, S. H. Geyer, J. Hewinson, N. A. Karp, The Sanger Mouse Genetics Project, B. Fu, F. Yang, Z. Kozik, J. Choudhary, L. Yu, M. S. van Ruiten, B. D. Rowland, C. J. Lelliott, M. del Castillo Velasco-Herrera, R. Verstraten, L. Bruckner, A. G. Henssen, M. A. Rooimans, J. de Lange, T. J. Mohun, M. J. Arends, K. A. Kentistou, P. A. Coelho, Y. Zhao, H. Zecchini, J. R. B. Perry, S. P. Jackson, G. Balmus
Nature. 2024; 627(8002): 130–136. Published online 2024 Feb 14. doi: 10.1038/s41586-023-07009-0
PMCID:
PMC10917660
AbstractArticlePDF–4.8M
2.
PAF1c links S-phase progression to immune evasion and MYC function in pancreatic carcinoma
Abdallah Gaballa, Anneli Gebhardt-Wolf, Bastian Krenz, Greta Mattavelli, Mara John, Giacomo Cossa, Silvia Andreani, Christina Schülein-Völk, Francisco Montesinos, Raphael Vidal, Carolin Kastner, Carsten P. Ade, Burkhard Kneitz, Georg Gasteiger, Peter Gallant, Mathias Rosenfeldt, Angela Riedel, Martin Eilers
Nat Commun. 2024; 15: 1446. Published online 2024 Feb 16. doi: 10.1038/s41467-024-45760-8
PMCID:
PMC10873513
AbstractArticlePDF–4.3M
3.
BraInMap elucidates the macromolecular connectivity landscape of mammalian brain
Reza Pourhaghighi, Peter E. A. Ash, Sadhna Phanse, Florian Goebels, Lucas Z. M. Hu, Siwei Chen, Yingying Zhang, Shayne D. Wierbowski, Samantha Boudeau, Mohamed T. Moutaoufik, Ramy H. Malty, Edyta Malolepsza, Kalliopi Tsafou, Aparna Nathan, Graham Cromar, Hongbo Guo, Ali Al Abdullatif, Daniel J. Apicco, Lindsay A. Becker, Aaron D. Gitler, Stefan M. Pulst, Ahmed Youssef, Ryan Hekman, Pierre C. Havugimana, Carl A. White, Benjamin C. Blum, Antonia Ratti, Camron D. Bryant, John Parkinson, Kasper Lage, Mohan Babu, Haiyuan Yu, Gary D. Bader, Benjamin Wolozin, Andrew Emili
Cell Syst. Author manuscript; available in PMC 2021 Apr 22.
Published in final edited form as: Cell Syst. 2020 Apr 22; 10(4): 333–350.e14. doi: 10.1016/j.cels.2020.03.003
Correction in:
Cell Syst. 2020 Aug 26; 11(2): 208.
PMCID:
PMC7938770
AbstractArticlePDF–2.0M
4.
The Paf1 complex positively regulates enhancer activity in mouse embryonic stem cells
Li Ding, Maciej Paszkowski-Rogacz, Jovan Mircetic, Debojyoti Chakraborty, Frank Buchholz
Life Sci Alliance. 2021 Mar; 4(3): e202000792. Published online 2020 Dec 29. doi: 10.26508/lsa.202000792
PMCID:
PMC7772781
AbstractArticlePDF–3.1M
5.
Paf1C regulates RNA polymerase II progression by modulating elongation rate
Liming Hou, Yating Wang, Yu Liu, Nan Zhang, Ilya Shamovsky, Evgeny Nudler, Bin Tian, Brian David Dynlacht
Proc Natl Acad Sci U S A. 2019 Jul 16; 116(29): 14583–14592. Published online 2019 Jun 28. doi: 10.1073/pnas.1904324116
PMCID:
PMC6642404
AbstractArticlePDF–2.5M
6.
Complementary proteomics strategies capture an ataxin-1 interactome in Neuro-2a cells
Sunyuan Zhang, Nicholas A. Williamson, Marie A. Bogoyevitch
Sci Data. 2018; 5: 180262. Published online 2018 Nov 20. doi: 10.1038/sdata.2018.262
PMCID:
PMC6244183
AbstractArticlePDF–753K
7.
Spatio-temporal profile of postynaptic interactomes integrates components of complex brain disorders
Jing Li, Wangshu Zhang, Hui Yang, Daniel P. Howrigan, Brent Wilkinson, Tade Souaiaia, Oleg V. Evgrafov, Giulio Genovese, Veronica A. Clementel, Jennifer C. Tudor, Ted Abel, James A. Knowles, Benjamin M. Neale, Kai Wang, Fengzhu Sun, Marcelo P. Coba
Nat Neurosci. Author manuscript; available in PMC 2018 Aug 1.
Published in final edited form as: Nat Neurosci. 2017 Aug; 20(8): 1150–1161. Published online 2017 Jun 26. doi: 10.1038/nn.4594
PMCID:
PMC5645082
AbstractArticlePDF–2.3M
8.
Regulation of transcriptional elongation in pluripotency and cell differentiation by the PHD-finger protein Phf5a
Alexandros Strikoudis, Charalampos Lazaris, Thomas Trimarchi, Antonio L. Galvao Neto, Yan Yang, Panagiotis Ntziachristos, Scott Rothbart, Shannon Buckley, Igor Dolgalev, Matthias Stadtfeld, Brian D. Strahl, Brian D. Dynlacht, Aristotelis Tsirigos, Iannis Aifantis
Nat Cell Biol. Author manuscript; available in PMC 2017 Apr 17.
Published in final edited form as: Nat Cell Biol. 2016 Nov; 18(11): 1127–1138. Published online 2016 Oct 17. doi: 10.1038/ncb3424
PMCID:
PMC5083132
AbstractArticlePDF–2.8M
9.
CTR9/PAF1c regulates molecular lineage identity, histone H3K36 trimethylation and genomic imprinting during preimplantation development
Kun Zhang, Jocelyn M. Haversat, Jesse Mager
Dev Biol. Author manuscript; available in PMC 2016 Jun 11.
Published in final edited form as: Dev Biol. 2013 Nov 1; 383(1): 15–27. Published online 2013 Sep 11. doi: 10.1016/j.ydbio.2013.09.005
PMCID:
PMC4903072
AbstractArticlePDF–983K
10.
PAF Complex Plays Novel Subunit-Specific Roles in Alternative Cleavage and Polyadenylation
Yan Yang, Wencheng Li, Mainul Hoque, Liming Hou, Steven Shen, Bin Tian, Brian D. Dynlacht
PLoS Genet. 2016 Jan; 12(1): e1005794. Published online 2016 Jan 14. doi: 10.1371/journal.pgen.1005794
Correction in:
PLoS Genet. 2016 Feb; 12(2): e1005883.
PMCID:
PMC4713055
AbstractArticlePDF–6.4M
11.
Protein Degradation of RNA Polymerase II-Association Factor 1(PAF1) Is Controlled by CNOT4 and 26S Proteasome
Hwa-Young Sun, Nari Kim, Cheol-Sang Hwang, Joo-Yeon Yoo
PLoS One. 2015; 10(5): e0125599. Published online 2015 May 1. doi: 10.1371/journal.pone.0125599
PMCID:
PMC4416890
AbstractArticlePDF–4.4M
12.
The X-linked Intellectual Disability Protein PHF6 Associates with the PAF1 Complex and Regulates Neuronal Migration in the Mammalian Brain
Chi Zhang, Luis A. Mejia, Ju Huang, Pamela Valnegri, Eric J. Bennett, Julius Anckar, Arezu Jahani-Asl, Gilbert Gallardo, Yoshiho Ikeuchi, Tomoko Yamada, Michael Rudnicki, J. Wade Harper, Azad Bonni
Neuron. Author manuscript; available in PMC 2014 Jun 19.
Published in final edited form as: Neuron. 2013 Jun 19; 78(6): 986–993. doi: 10.1016/j.neuron.2013.04.021
PMCID:
PMC3694281
AbstractArticlePDF–4.3M
13.
Dynamic Loss of H2B Ubiquitylation without Corresponding Changes in H3K4 Trimethylation during Myogenic Differentiation
Vasupradha Vethantham, Yan Yang, Christopher Bowman, Patrik Asp, Jeong-Heon Lee, David G. Skalnik, Brian D. Dynlacht
Mol Cell Biol. 2012 Mar; 32(6): 1044–1055. doi: 10.1128/MCB.06026-11
PMCID:
PMC3295016
AbstractArticlePDF–2.3M
14.
Oct4 links multiple epigenetic pathways to the pluripotency network
Junjun Ding, Huilei Xu, Francesco Faiola, Avi Ma'ayan, Jianlong Wang
Cell Res. 2012 Jan; 22(1): 155–167. Published online 2011 Nov 15. doi: 10.1038/cr.2011.179
PMCID:
PMC3252465
AbstractArticlePDF–2.7M
15.
Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium
Pascale Gaudet, Michael S. Livstone, Suzanna E. Lewis, Paul D. Thomas
Brief Bioinform. 2011 Sep; 12(5): 449–462. Published online 2011 Aug 27. doi: 10.1093/bib/bbr042
PMCID:
PMC3178059
AbstractArticlePDF–1.0M
16.
RNA Polymerase II Associated Factor 1/PD2 Maintains Self-Renewal by Its Interaction with Oct3/4 in Mouse Embryonic Stem Cells
Moorthy P. Ponnusamy, Shonali Deb, Parama Dey, Subhankar Chakraborty, Satyanarayana Rachagani, Shantibhusan Senapati, Surinder K. Batra
Stem Cells. Author manuscript; available in PMC 2010 Jun 23.
Published in final edited form as: Stem Cells. 2009 Dec; 27(12): 3001–3011. doi: 10.1002/stem.237
PMCID:
PMC2891238
AbstractArticlePDF–2.6M
17.
The PAF complex synergizes with MLL fusion proteins at HOX loci to promote leukemogenesis
Andrew G. Muntean, Jiaying Tan, Kajal Sitwala, Yongsheng Huang, Joel Bronstein, James A. Connelly, Venkatesha Basrur, Kojo S. J. Elenitoba-Johnson, Jay L. Hess
Cancer Cell. Author manuscript; available in PMC 2011 Jun 15.
Published in final edited form as: Cancer Cell. 2010 Jun 15; 17(6): 609–621. doi: 10.1016/j.ccr.2010.04.012
PMCID:
PMC2888888
AbstractArticlePDF–3.0M
18.
BGEM: An In Situ Hybridization Database of Gene Expression in the Embryonic and Adult Mouse Nervous System
Susan Magdaleno, Patricia Jensen, Craig L Brumwell, Anna Seal, Karen Lehman, Andrew Asbury, Tony Cheung, Tommie Cornelius, Diana M Batten, Christopher Eden, Shannon M Norland, Dennis S Rice, Nilesh Dosooye, Sundeep Shakya, Perdeep Mehta, Tom Curran
PLoS Biol. 2006 Apr; 4(4): e86. Published online 2006 Mar 28. doi: 10.1371/journal.pbio.0040086
PMCID:
PMC1413568
ArticlePDF–99K
19.
RIKEN Integrated Sequence Analysis (RISA) System—384-Format Sequencing Pipeline with 384 Multicapillary Sequencer
Kazuhiro Shibata, Masayoshi Itoh, Katsunori Aizawa, Sumiharu Nagaoka, Nobuya Sasaki, Piero Carninci, Hideaki Konno, Junichi Akiyama, Katsuo Nishi, Tokuji Kitsunai, Hideo Tashiro, Mari Itoh, Noriko Sumi, Yoshiyuki Ishii, Shin Nakamura, Makoto Hazama, Tsutomu Nishine, Akira Harada, Rintaro Yamamoto, Hiroyuki Matsumoto, Sumito Sakaguchi, Takashi Ikegami, Katsuya Kashiwagi, Syuji Fujiwake, Kouji Inoue, Yoshiyuki Togawa, Masaki Izawa, Eiji Ohara, Masanori Watahiki, Yuko Yoneda, Tomokazu Ishikawa, Kaori Ozawa, Takumi Tanaka, Shuji Matsuura, Jun Kawai, Yasushi Okazaki, Masami Muramatsu, Yorinao Inoue, Akira Kira, Yoshihide Hayashizaki
Genome Res. 2000 Nov; 10(11): 1757–1771. doi: 10.1101/gr.152600
PMCID:
PMC310992
AbstractArticlePDF–3.4M
20.
Normalization and Subtraction of Cap-Trapper-Selected cDNAs to Prepare Full-Length cDNA Libraries for Rapid Discovery of New Genes
Piero Carninci, Yuko Shibata, Norihito Hayatsu, Yuichi Sugahara, Kazuhiro Shibata, Masayoshi Itoh, Hideaki Konno, Yasushi Okazaki, Masami Muramatsu, Yoshihide Hayashizaki
Genome Res. 2000 Oct; 10(10): 1617–1630. doi: 10.1101/gr.145100
PMCID:
PMC310980
AbstractArticlePDF–1.4M

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