PMC Links for GEO Profiles (Select 19206885) - PMC

Select item 98363481.

A synthetic genetic array screen for interactions with the RNA helicase DED1 during cell stress in budding yeast

Sara B Carey, Hannah M List, Ashwin Siby, Paolo Guerra, Timothy A Bolger

G3 (Bethesda) 2023 Jan; 13(1): jkac296. Published online 2022 Nov 21. doi: 10.1093/g3journal/jkac296

PMCID:: PMC9836348

Select item 96309862.

A balancing act: interactions within NuA4/TIP60 regulate picNuA4 function in Saccharomyces cerevisiae and humans

Phoebe Y T Lu, Alyssa C Kirlin, Maria J Aristizabal, Hilary T Brewis, Nancy Lévesque, Dheva T Setiaputra, Nikita Avvakumov, Joris J Benschop, Marian Groot Koerkamp, Frank C P Holstege, Nevan J Krogan, Calvin K Yip, Jacques Côté, Michael S Kobor

Genetics. 2022 Nov; 222(3): iyac136. Published online 2022 Sep 6. doi: 10.1093/genetics/iyac136

PMCID:: PMC9630986

Abstract Article PDF–2.2M

Select item 92098113.

New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources

Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry

Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224

PMCID:: PMC9209811

Abstract Article PDF–818K

Select item 85769174.

Tubulin isotypes optimize distinct spindle positioning mechanisms during yeast mitosis

Emmanuel T. Nsamba, Abesh Bera, Michael Costanzo, Charles Boone, Mohan L. Gupta, Jr.

J Cell Biol. 2021 Dec 6; 220(12): e202010155. Published online 2021 Nov 5. doi: 10.1083/jcb.202010155

PMCID:: PMC8576917

Abstract Article PDF–7.4M

Select item 65216975.

A Chemogenomic Screening Platform Used to Identify Chemotypes Perturbing HSP90 Pathways

Fiona M. Thomas, Kourtney M. Goode, Bartek Rajwa, Andrew A. Bieberich, Larisa V. Avramova, Tony R. Hazbun, V. Jo Davisson

SLAS Discov. Author manuscript; available in PMC 2019 May 16.

Published in final edited form as: SLAS Discov. 2017 Jul; 22(6): 706–719. Published online 2017 Jan 31. doi: 10.1177/2472555216687525

PMCID:: PMC6521697

Abstract Article PDF–1.6M

Select item 56618856.

A global interaction network maps a wiring diagram of cellular function

Michael Costanzo, Benjamin VanderSluis, Elizabeth N. Koch, Anastasia Baryshnikova, Carles Pons, Guihong Tan, Wen Wang, Matej Usaj, Julia Hanchard, Susan D. Lee, Vicent Pelechano, Erin B. Styles, Maximilian Billmann, Jolanda van Leeuwen, Nydia van Dyk, Zhen-Yuan Lin, Elena Kuzmin, Justin Nelson, Jeff S. Piotrowski, Tharan Srikumar, Sondra Bahr, Yiqun Chen, Raamesh Deshpande, Christoph F. Kurat, Sheena C. Li, Zhijian Li, Mojca Mattiazzi Usaj, Hiroki Okada, Natasha Pascoe, Bryan-Joseph San Luis, Sara Sharifpoor, Emira Shuteriqi, Scott W. Simpkins, Jamie Snider, Harsha Garadi Suresh, Yizhao Tan, Hongwei Zhu, Noel Malod-Dognin, Vuk Janjic, Natasa Przulj, Olga G. Troyanskaya, Igor Stagljar, Tian Xia, Yoshikazu Ohya, Anne-Claude Gingras, Brian Raught, Michael Boutros, Lars M. Steinmetz, Claire L. Moore, Adam P. Rosebrock, Amy A. Caudy, Chad L. Myers, Brenda Andrews, Charles Boone

Science. Author manuscript; available in PMC 2017 Oct 30.

Published in final edited form as: Science. 2016 Sep 23; 353(6306): aaf1420. doi: 10.1126/science.aaf1420

PMCID:: PMC5661885

Abstract Article PDF–2.6M

Select item 55929457.

A Functional Link Between Bir1 and the Saccharomyces cerevisiae Ctf19 Kinetochore Complex Revealed Through Quantitative Fitness Analysis

Vasso Makrantoni, Adam Ciesiolka, Conor Lawless, Josefin Fernius, Adele Marston, David Lydall, Michael J. R. Stark

G3 (Bethesda) 2017 Sep; 7(9): 3203–3215. Published online 2017 Jul 28. doi: 10.1534/g3.117.300089

PMCID:: PMC5592945

Abstract Article PDF–1.7M

Select item 52043488.

A novel translational control mechanism involving RNA structures within coding sequences

Jennifer Jungfleisch, Danny D. Nedialkova, Ivan Dotu, Katherine E. Sloan, Neus Martinez-Bosch, Lukas Brüning, Emanuele Raineri, Pilar Navarro, Markus T. Bohnsack, Sebastian A. Leidel, Juana Díez

Genome Res. 2017 Jan; 27(1): 95–106. doi: 10.1101/gr.209015.116

Correction in:: Genome Res. 2017 Apr; 27(4): 663.

PMCID:: PMC5204348

Abstract Article PDF–1.3M

Select item 43857979.

Yeast β-1,6-Glucan Is a Primary Target for the Saccharomyces cerevisiae K2 Toxin

Juliana Lukša, Monika Podoliankaitė, Iglė Vepštaitė, Živilė Strazdaitė-Žielienė, Jaunius Urbonavičius, Elena Servienė

Eukaryot Cell. 2015 Apr; 14(4): 406–414. Prepublished online 2015 Feb 20. Published online 2015 Apr 3. doi: 10.1128/EC.00287-14

PMCID:: PMC4385797

Abstract Article PDF–1.5M

Select item 406524910.

Conditional Genetic Interactions of RTT107, SLX4, and HRQ1 Reveal Dynamic Networks upon DNA Damage in S. cerevisiae

Grace P. Leung, Maria J. Aristizabal, Nevan J. Krogan, Michael S. Kobor

G3 (Bethesda) 2014 Jun; 4(6): 1059–1069. Published online 2014 Apr 2. doi: 10.1534/g3.114.011205

PMCID:: PMC4065249

Abstract Article PDF–2.3M

Select item 396249011.

The Yeast Ess1 Prolyl Isomerase Controls Swi6 and Whi5 Nuclear Localization

David Atencio, Cassandra Barnes, Thomas M. Duncan, Ian M. Willis, Steven D. Hanes

G3 (Bethesda) 2014 Mar; 4(3): 523–537. Published online 2014 Jan 27. doi: 10.1534/g3.113.008763

PMCID:: PMC3962490

Abstract Article PDF–2.3M

Select item 351004412.

The Yeast SR-Like Protein Npl3 Links Chromatin Modification to mRNA Processing

Erica A. Moehle, Colm J. Ryan, Nevan J. Krogan, Tracy L. Kress, Christine Guthrie

PLoS Genet. 2012 Nov; 8(11): e1003101. Published online 2012 Nov 29. doi: 10.1371/journal.pgen.1003101

PMCID:: PMC3510044

Abstract Article PDF–3.4M

Select item 307236813.

Quantitative Fitness Analysis Shows That NMD Proteins and Many Other Protein Complexes Suppress or Enhance Distinct Telomere Cap Defects

Stephen Gregory Addinall, Eva-Maria Holstein, Conor Lawless, Min Yu, Kaye Chapman, A. Peter Banks, Hien-Ping Ngo, Laura Maringele, Morgan Taschuk, Alexander Young, Adam Ciesiolka, Allyson Lurena Lister, Anil Wipat, Darren James Wilkinson, David Lydall

PLoS Genet. 2011 Apr; 7(4): e1001362. Published online 2011 Apr 7. doi: 10.1371/journal.pgen.1001362

PMCID:: PMC3072368

Abstract Article PDF–4.0M

Select item 277710314.

A Genomic Screen for Yeast Mutants Defective in Selective Mitochondria Autophagy

Tomotake Kanki, Ke Wang, Misuzu Baba, Clinton R. Bartholomew, Melinda A. Lynch-Day, Zhou Du, Jiefei Geng, Kai Mao, Zhifen Yang, Wei-Lien Yen, Daniel J. Klionsky

Mol Biol Cell. 2009 Nov 15; 20(22): 4730–4738. doi: 10.1091/mbc.E09-03-0225

PMCID:: PMC2777103

Abstract Article PDF–1.3M

Select item 264926915.

Cu, Zn Superoxide Dismutase and NADP(H) Homeostasis Are Required for Tolerance of Endoplasmic Reticulum Stress in Saccharomyces cerevisiae

Shi-Xiong Tan, Mariati Teo, Yuen T. Lam, Ian W. Dawes, Gabriel G. Perrone

Mol Biol Cell. 2009 Mar 1; 20(5): 1493–1508. doi: 10.1091/mbc.E08-07-0697

PMCID:: PMC2649269

Abstract Article PDF–722K

Select item 264897916.

Computationally Driven, Quantitative Experiments Discover Genes Required for Mitochondrial Biogenesis

David C. Hess, Chad L. Myers, Curtis Huttenhower, Matthew A. Hibbs, Alicia P. Hayes, Jadine Paw, John J. Clore, Rosa M. Mendoza, Bryan San Luis, Corey Nislow, Guri Giaever, Michael Costanzo, Olga G. Troyanskaya, Amy A. Caudy

PLoS Genet. 2009 Mar; 5(3): e1000407. Published online 2009 Mar 20. doi: 10.1371/journal.pgen.1000407

PMCID:: PMC2648979

Abstract Article PDF–1.6M

Select item 257886017.

Distinct roles for Khd1p in the localization and expression of bud-localized mRNAs in yeast

Yuko Hasegawa, Kenji Irie, André P. Gerber

RNA. 2008 Nov; 14(11): 2333–2347. doi: 10.1261/rna.1016508

PMCID:: PMC2578860

Abstract Article PDF–1.3M

Select item 168144418.

Gene function prediction from congruent synthetic lethal interactions in yeast

Ping Ye, Brian D Peyser, Xuewen Pan, Jef D Boeke, Forrest A Spencer, Joel S Bader

Mol Syst Biol. 2005; 1: 2005.0026. Published online 2005 Nov 22. doi: 10.1038/msb4100034

PMCID:: PMC1681444

Abstract Article PDF–257K

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