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Items: 1 to 20 of 85

1.
Protein interaction network revealed by quantitative proteomic analysis links TFIIB to multiple aspects of the transcription cycle
Michael J. O’Brien, Athar Ansari
Biochim Biophys Acta Proteins Proteom. Author manuscript; available in PMC 2024 Feb 16.
Published in final edited form as: Biochim Biophys Acta Proteins Proteom. 2024 Jan 1; 1872(1): 140968. Published online 2023 Oct 19. doi: 10.1016/j.bbapap.2023.140968
PMCID:
PMC10872477
AbstractArticlePDF–1.7M
2.
Elf1 promotes Rad26’s interaction with lesion-arrested Pol II for transcription-coupled repair
Reta D. Sarsam, Jun Xu, Indrajit Lahiri, Wenzhi Gong, Qingrong Li, Juntaek Oh, Zhen Zhou, Peini Hou, Jenny Chong, Nan Hao, Shisheng Li, Dong Wang, Andres E. Leschziner
Proc Natl Acad Sci U S A. 2024 Jan 16; 121(3): e2314245121. Published online 2024 Jan 9. doi: 10.1073/pnas.2314245121
PMCID:
PMC10801861
AbstractArticlePDF–3.3M
3.
The social and structural architecture of the yeast protein interactome
André C. Michaelis, Andreas-David Brunner, Maximilian Zwiebel, Florian Meier, Maximilian T. Strauss, Isabell Bludau, Matthias Mann
Nature. 2023; 624(7990): 192–200. Published online 2023 Nov 15. doi: 10.1038/s41586-023-06739-5
PMCID:
PMC10700138
AbstractArticlePDF–20M
4.
Rpb7 represses transcription-coupled nucleotide excision repair
Wenzhi Gong, Shisheng Li
J Biol Chem. 2023 Aug; 299(8): 104969. Published online 2023 Jun 27. doi: 10.1016/j.jbc.2023.104969
PMCID:
PMC10382679
AbstractArticlePDF–5.3M
5.
The Hsp90 molecular chaperone governs client proteins by targeting intrinsically disordered regions
Janhavi A. Kolhe, Neethu L. Babu, Brian C. Freeman
Mol Cell. Author manuscript; available in PMC 2024 Jun 15.
Published in final edited form as: Mol Cell. 2023 Jun 15; 83(12): 2035–2044.e7. Published online 2023 Jun 8. doi: 10.1016/j.molcel.2023.05.021
PMCID:
PMC10297700
AbstractArticlePDF–2.0M
6.
A balancing act: interactions within NuA4/TIP60 regulate picNuA4 function in Saccharomyces cerevisiae and humans
Phoebe Y T Lu, Alyssa C Kirlin, Maria J Aristizabal, Hilary T Brewis, Nancy Lévesque, Dheva T Setiaputra, Nikita Avvakumov, Joris J Benschop, Marian Groot Koerkamp, Frank C P Holstege, Nevan J Krogan, Calvin K Yip, Jacques Côté, Michael S Kobor
Genetics. 2022 Nov; 222(3): iyac136. Published online 2022 Sep 6. doi: 10.1093/genetics/iyac136
PMCID:
PMC9630986
AbstractArticlePDF–2.2M
7.
The Paf1 complex is required for RNA polymerase II removal in response to DNA damage
Feilong Chen, Beibei Liu, Hao Zhou, Jiafu Long
Proc Natl Acad Sci U S A. 2022 Oct 4; 119(40): e2207332119. Published online 2022 Sep 26. doi: 10.1073/pnas.2207332119
PMCID:
PMC9546532
AbstractArticlePDF–2.1M
8.
Genomic analysis of Rad26 and Rad1–Rad10 reveals differences in their dependence on Mediator and RNA polymerase II
Diyavarshini Gopaul, Cyril Denby Wilkes, Arach Goldar, Nathalie Giordanengo Aiach, Marie-Bénédicte Barrault, Elizaveta Novikova, Julie Soutourina
Genome Res. 2022 Aug; 32(8): 1516–1528. doi: 10.1101/gr.276371.121
PMCID:
PMC9435749
AbstractArticlePDF–3.6M
9.
New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources
Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry
Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224
PMCID:
PMC9209811
AbstractArticlePDF–818K
10.
Strand-specific effect of Rad26 and TFIIS in rescuing transcriptional arrest by CAG trinucleotide repeat slip-outs
Jun Xu, Jenny Chong, Dong Wang
Nucleic Acids Res. 2021 Jul 21; 49(13): 7618–7627. Published online 2021 Jul 1. doi: 10.1093/nar/gkab573
PMCID:
PMC8287942
AbstractArticlePDF–1.9M
11.
Distinct roles for RSC and SWI/SNF chromatin remodelers in genomic excision repair
Kaitlynne A. Bohm, Amelia J. Hodges, Wioletta Czaja, Kathiresan Selvam, Michael J. Smerdon, Peng Mao, John J. Wyrick
Genome Res. 2021 Jun; 31(6): 1047–1059. doi: 10.1101/gr.274373.120
PMCID:
PMC8168587
AbstractArticlePDF–3.6M
12.
Regulation of UV damage repair in quiescent yeast cells
Lindsey J. Long, Po-Hsuen Lee, Eric M. Small, Cory Hillyer, Yan Guo, Mary Ann Osley
DNA Repair (Amst) Author manuscript; available in PMC 2021 Feb 18.
Published in final edited form as: DNA Repair (Amst). 2020 Jun; 90: 102861. Published online 2020 Apr 30. doi: 10.1016/j.dnarep.2020.102861
PMCID:
PMC7891302
AbstractArticlePDF–1018K
13.
Atypical UV Photoproducts Induce Non-canonical Mutation Classes Associated with Driver Mutations in Melanoma
Marian F. Laughery, Alexander J. Brown, Kaitlynne A. Bohm, Smitha Sivapragasam, Haley S. Morris, Mila Tchmola, Angelica D. Washington, Debra Mitchell, Stephen Mather, Ewa P. Malc, Piotr A. Mieczkowski, Steven A. Roberts, John J. Wyrick
Cell Rep. Author manuscript; available in PMC 2020 Dec 2.
Published in final edited form as: Cell Rep. 2020 Nov 17; 33(7): 108401. doi: 10.1016/j.celrep.2020.108401
PMCID:
PMC7709870
AbstractArticlePDF–2.6M
14.
Cockayne syndrome B protein acts as an ATP-dependent processivity factor that helps RNA polymerase II overcome nucleosome barriers
Jun Xu, Wei Wang, Liang Xu, Jia-Yu Chen, Jenny Chong, Juntaek Oh, Andres E. Leschziner, Xiang-Dong Fu, Dong Wang
Proc Natl Acad Sci U S A. 2020 Oct 13; 117(41): 25486–25493. Published online 2020 Sep 28. doi: 10.1073/pnas.2013379117
PMCID:
PMC7568279
AbstractArticlePDF–1.2M
15.
Genome-wide role of Rad26 in promoting transcription-coupled nucleotide excision repair in yeast chromatin
Mingrui Duan, Kathiresan Selvam, John J. Wyrick, Peng Mao
Proc Natl Acad Sci U S A. 2020 Aug 4; 117(31): 18608–18616. Published online 2020 Jul 20. doi: 10.1073/pnas.2003868117
PMCID:
PMC7414089
AbstractArticlePDF–1.5M
16.
A genetic map of the response to DNA damage in human cells
Michele Olivieri, Tiffany Cho, Alejandro Álvarez-Quilón, Kejiao Li, Matthew J. Schellenberg, Michal Zimmermann, Nicole Hustedt, Silvia Emma Rossi, Salomé Adam, Henrique Melo, Anne Margriet Heijink, Guillermo Sastre-Moreno, Nathalie Moatti, Rachel K. Szilard, Andrea McEwan, Alexanda K. Ling, Almudena Serrano-Benitez, Tajinder Ubhi, Sumin Feng, Judy Pawling, Irene Delgado-Sainz, Michael W. Ferguson, James W. Dennis, Grant W. Brown, Felipe Cortés-Ledesma, R. Scott Williams, Alberto Martin, Dongyi Xu, Daniel Durocher
Cell. Author manuscript; available in PMC 2021 Jul 23.
Published in final edited form as: Cell. 2020 Jul 23; 182(2): 481–496.e21. Published online 2020 Jul 9. doi: 10.1016/j.cell.2020.05.040
PMCID:
PMC7384976
AbstractArticlePDF–2.5M
17.
Functional interplay between Mediator and RNA polymerase II in Rad2/XPG loading to the chromatin
Adrien Georges, Diyavarshini Gopaul, Cyril Denby Wilkes, Nathalie Giordanengo Aiach, Elizaveta Novikova, Marie-Bénédicte Barrault, Olivier Alibert, Julie Soutourina
Nucleic Acids Res. 2019 Sep 26; 47(17): 8988–9004. Published online 2019 Jul 12. doi: 10.1093/nar/gkz598
PMCID:
PMC6753472
AbstractArticlePDF–3.2M
18.
Histone H4 H75E mutation attenuates global genomic and Rad26-independent transcription-coupled nucleotide excision repair
Kathiresan Selvam, Sheikh Arafatur Rahman, Shisheng Li
Nucleic Acids Res. 2019 Aug 22; 47(14): 7392–7401. Published online 2019 May 22. doi: 10.1093/nar/gkz453
PMCID:
PMC6698655
AbstractArticlePDF–6.4M
19.
Ccr4–Not maintains genomic integrity by controlling the ubiquitylation and degradation of arrested RNAPII
Haoyang Jiang, Marley Wolgast, Laura M. Beebe, Joseph C. Reese
Genes Dev. 2019 Jun 1; 33(11-12): 705–717. doi: 10.1101/gad.322453.118
PMCID:
PMC6546055
AbstractArticlePDF–5.0M
20.
Structural Basis for Eukaryotic Transcription-Coupled DNA Repair Initiation
Jun Xu, Indrajit Lahiri, Wei Wang, Adam Wier, Michael A. Cianfrocco, Jenny Chong, Alissa A. Hare, Peter B. Dervan, Frank DiMaio, Andres E. Leschziner, Dong Wang
Nature. Author manuscript; available in PMC 2018 May 22.
Published in final edited form as: Nature. 2017 Nov 30; 551(7682): 653–657. Published online 2017 Nov 22. doi: 10.1038/nature24658
PMCID:
PMC5907806
AbstractArticlePDF–2.1M

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