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Select item 108724771.

Protein interaction network revealed by quantitative proteomic analysis links TFIIB to multiple aspects of the transcription cycle

Michael J. O’Brien, Athar Ansari

Biochim Biophys Acta Proteins Proteom. Author manuscript; available in PMC 2024 Feb 16.

Published in final edited form as: Biochim Biophys Acta Proteins Proteom. 2024 Jan 1; 1872(1): 140968. Published online 2023 Oct 19. doi: 10.1016/j.bbapap.2023.140968

PMCID:: PMC10872477

Abstract Article PDF–1.7M

Select item 107001382.

The social and structural architecture of the yeast protein interactome

André C. Michaelis, Andreas-David Brunner, Maximilian Zwiebel, Florian Meier, Maximilian T. Strauss, Isabell Bludau, Matthias Mann

Nature. 2023; 624(7990): 192–200. Published online 2023 Nov 15. doi: 10.1038/s41586-023-06739-5

PMCID:: PMC10700138

Abstract Article PDF–20M

Select item 102333683.

A systematic proximity ligation approach to studying protein‐substrate specificity identifies the substrate spectrum of the Ssh1 translocon

Nir Cohen, Naama Aviram, Maya Schuldiner

EMBO J. 2023 Jun; 42(11): e113385. Published online 2023 Apr 19. doi: 10.15252/embj.2022113385

PMCID:: PMC10233368

Abstract Article PDF–1.2M

Select item 99898234.

Single-copy locus proteomics of early- and late-firing DNA replication origins identifies a role of Ask1/DASH complex in replication timing control

Matthias Weiβ, Anna Chanou, Tamas Schauer, Andrey Tvardovskiy, Stefan Meiser, Ann-Christine König, Tobias Schmidt, Elisabeth Kruse, Henning Ummethum, Manuel Trauner, Marcel Werner, Maxime Lalonde, Stefanie M. Hauck, Antonio Scialdone, Stephan Hamperl

Cell Rep. 2023 Feb 28; 42(2): 112045. Published online 2023 Jan 25. doi: 10.1016/j.celrep.2023.112045

PMCID:: PMC9989823

Abstract Article

Select item 92098115.

New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources

Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry

Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224

PMCID:: PMC9209811

Abstract Article PDF–818K

Select item 89721866.

Three interacting regions of the Ndc80 and Dam1 complexes support microtubule tip-coupling under load

Rachel L. Flores, Zachary E. Peterson, Alex Zelter, Michael Riffle, Charles L. Asbury, Trisha N. Davis

J Cell Biol. 2022 May 2; 221(5): e202107016. Published online 2022 Mar 30. doi: 10.1083/jcb.202107016

PMCID:: PMC8972186

Abstract Article PDF–5.1M

Select item 84414107.

Phospho‐regulated Bim1/EB1 interactions trigger Dam1c ring assembly at the budding yeast outer kinetochore

Alexander Dudziak, Lena Engelhard, Cole Bourque, Björn Udo Klink, Pascaline Rombaut, Nikolay Kornakov, Karolin Jänen, Franz Herzog, Christos Gatsogiannis, Stefan Westermann

EMBO J. 2021 Sep 15; 40(18): e108004. Published online 2021 Jul 27. doi: 10.15252/embj.2021108004

PMCID:: PMC8441410

Abstract Article PDF–4.0M

Select item 80508438.

Aurora B switches relative strength of kinetochore–microtubule attachment modes for error correction

Harinath Doodhi, Taciana Kasciukovic, Lesley Clayton, Tomoyuki U. Tanaka

J Cell Biol. 2021 Jun 7; 220(6): e202011117. Published online 2021 Apr 14. doi: 10.1083/jcb.202011117

PMCID:: PMC8050843

Abstract Article PDF–5.3M

Select item 78794829.

Analysis of the TORC1 interactome reveals a spatially distinct function of TORC1 in mRNP complexes

Yeonji Chang, Gyubum Lim, Won-Ki Huh

J Cell Biol. 2021 Apr 5; 220(4): e201912060. Published online 2021 Feb 10. doi: 10.1083/jcb.201912060

PMCID:: PMC7879482

Abstract Article PDF–5.9M

Select item 779018410.

Heterozygous mutations cause genetic instability in a yeast model of cancer evolution

Miguel C. Coelho, Ricardo M. Pinto, Andrew W. Murray

Nature. Author manuscript; available in PMC 2021 Jan 7.

Published in final edited form as: Nature. 2019 Feb; 566(7743): 275–278. Published online 2019 Jan 30. doi: 10.1038/s41586-019-0887-y

PMCID:: PMC7790184

Abstract Article PDF–3.5M

Select item 771875111.

Comprehensive Synthetic Genetic Array Analysis of Alleles That Interact with Mutation of the Saccharomyces cerevisiae RecQ Helicases Hrq1 and Sgs1

Elsbeth Sanders, Phoebe A. Nguyen, Cody M. Rogers, Matthew L. Bochman

G3 (Bethesda) 2020 Dec; 10(12): 4359–4368. Published online 2020 Oct 28. doi: 10.1534/g3.120.401709

PMCID:: PMC7718751

Abstract Article PDF–1.2M

Select item 749778012.

Cdk1 Phosphorylation of the Dam1 Complex Strengthens Kinetochore-Microtubule Attachments

Abraham Gutierrez, Jae ook Kim, Neil T. Umbreit, Charles L. Asbury, Trisha N. Davis, Matthew P. Miller, Sue Biggins

Curr Biol. 2020 Nov 16; 30(22): 4491–4499.e5. Published online 2020 Sep 17. doi: 10.1016/j.cub.2020.08.054

PMCID:: PMC7497780

Abstract Article PDF–2.1M

Select item 681559113.

Structure of the DASH/Dam1 Complex Shows its Role at the Yeast Kinetochore-Microtubule Interface

Simon Jenni, Stephen C. Harrison

Science. Author manuscript; available in PMC 2019 Oct 27.

Published in final edited form as: Science. 2018 May 4; 360(6388): 552–558. doi: 10.1126/science.aar6436

PMCID:: PMC6815591

Abstract Article PDF–2.3M

Select item 675347114.

Rad5 dysregulation drives hyperactive recombination at replication forks resulting in cisplatin sensitivity and genome instability

Eric E Bryant, Ivana Šunjevarić, Luke Berchowitz, Rodney Rothstein, Robert J D Reid

Nucleic Acids Res. 2019 Sep 26; 47(17): 9144–9159. Published online 2019 Jul 27. doi: 10.1093/nar/gkz631

PMCID:: PMC6753471

Abstract Article PDF–6.0M

Select item 660580115.

The stoichiometry of the outer kinetochore is modulated by microtubule-proximal regulatory factors

Karthik Dhatchinamoorthy, Jay R. Unruh, Jeffrey J. Lange, Michaella Levy, Brian D. Slaughter, Jennifer L. Gerton

J Cell Biol. 2019 Jul 1; 218(7): 2124–2135. Published online 2019 May 22. doi: 10.1083/jcb.201810070

PMCID:: PMC6605801

Abstract Article PDF–2.6M

Select item 658956616.

Selective defects in gene expression control genome instability in yeast splicing mutants

Annie S. Tam, Tianna S. Sihota, Karissa L. Milbury, Anni Zhang, Veena Mathew, Peter C. Stirling

Mol Biol Cell. 2019 Jan 15; 30(2): 191–200. doi: 10.1091/mbc.E18-07-0439

PMCID:: PMC6589566

Abstract Article PDF–5.1M

Select item 647288017.

Saccharomyces cerevisiae Gle2/Rae1 is involved in septin organization, essential for cell cycle progression

Gesa Zander, Wilfried Kramer, Anika Seel, Heike Krebber

Yeast. 2017 Nov; 34(11): 459–470. Published online 2017 Sep 28. doi: 10.1002/yea.3249

PMCID:: PMC6472880

Abstract Article PDF–1.9M

Select item 621571318.

Systematic Analysis of Complex Genetic Interactions

Elena Kuzmin, Benjamin VanderSluis, Wen Wang, Guihong Tan, Raamesh Deshpande, Yiqun Chen, Matej Usaj, Attila Balint, Mojca Mattiazzi Usaj, Jolanda van Leeuwen, Elizabeth N. Koch, Carles Pons, Andrius J. Dagilis, Michael Pryszlak, Jason Zi Yang Wang, Julia Hanchard, Margot Riggi, Kaicong Xu, Hamed Heydari, Bryan-Joseph San Luis, Ermira Shuteriqi, Hongwei Zhu, Nydia Van Dyk, Sara Sharifpoor, Michael Costanzo, Robbie Loewith, Amy Caudy, Daniel Bolnick, Grant W. Brown, Brenda J. Andrews, Charles Boone, Chad L. Myers

Science. Author manuscript; available in PMC 2018 Nov 4.

Published in final edited form as: Science. 2018 Apr 20; 360(6386): eaao1729. doi: 10.1126/science.aao1729

PMCID:: PMC6215713

Abstract Article PDF–1.9M

Select item 608535119.

A simple and inexpensive quantitative technique for determining chemical sensitivity in Saccharomyces cerevisiae

Chao-Wei Hung, Jorge Y. Martínez-Márquez, Fatima T. Javed, Mara C. Duncan

Sci Rep. 2018; 8: 11919. Published online 2018 Aug 9. doi: 10.1038/s41598-018-30305-z

PMCID:: PMC6085351

Abstract Article PDF–3.9M

Select item 576535920.

Genome-Wide Mapping of Decay Factor–mRNA Interactions in Yeast Identifies Nutrient-Responsive Transcripts as Targets of the Deadenylase Ccr4

Jason E. Miller, Liye Zhang, Haoyang Jiang, Yunfei Li, B. Franklin Pugh, Joseph C. Reese

G3 (Bethesda) 2018 Jan; 8(1): 315–330. Published online 2017 Nov 20. doi: 10.1534/g3.117.300415

PMCID:: PMC5765359

Abstract Article PDF–2.2M

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