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Items: 1 to 20 of 21

1.
Characterization of the intracellular neurexin interactome by in vivo proximity ligation suggests its involvement in presynaptic actin assembly
Marcos Schaan Profes, Araven Tiroumalechetty, Neel Patel, Stephanie S. Lauar, Simone Sidoli, Peri T. Kurshan
PLoS Biol. 2024 Jan; 22(1): e3002466. Published online 2024 Jan 22. doi: 10.1371/journal.pbio.3002466
PMCID:
PMC10802952
AbstractArticlePDF–2.7M
2.
SIN-3 acts in distinct complexes to regulate the germline transcriptional program in Caenorhabditis elegans
Valerie J. Robert, Matthieu Caron, Loic Gely, Annie Adrait, Victoria Pakulska, Yohann Couté, Manon Chevalier, Christian G. Riedel, Cecile Bedet, Francesca Palladino
Development. 2023 Nov 1; 150(21): dev201755. Published online 2023 Oct 17. doi: 10.1242/dev.201755
PMCID:
PMC10617626
AbstractArticle
3.
A germline-targeted genetic screen for xrn-2 suppressors identifies a novel gene C34C12.2 in Caenorhabditis elegans
Ilkin Aygün, Alicja Rzepczak, Takashi S. Miki
Genet Mol Biol. 2023; 46(2): e20220328. Published online 2023 May 15. doi: 10.1590/1678-4685-GMB-2022-0328
PMCID:
PMC10202090
AbstractArticlePDF–3.7M
4.
Screening by deep sequencing reveals mediators of microRNA tailing in C. elegans
Karl-Frédéric Vieux, Katherine P Prothro, Leanne H Kelley, Cameron Palmer, Eleanor M Maine, Isana Veksler-Lublinsky, Katherine McJunkin
Nucleic Acids Res. 2021 Nov 8; 49(19): 11167–11180. Published online 2021 Sep 29. doi: 10.1093/nar/gkab840
PMCID:
PMC8565341
AbstractArticlePDF–1.7M
5.
Novel LOTUS-domain proteins are organizational hubs that recruit C. elegans Vasa to germ granules
Patricia Giselle Cipriani, Olivia Bay, John Zinno, Michelle Gutwein, Hin Hark Gan, Vinay K Mayya, George Chung, Jia-Xuan Chen, Hala Fahs, Yu Guan, Thomas F Duchaine, Matthias Selbach, Fabio Piano, Kristin C Gunsalus
eLife. 2021; 10: e60833. Published online 2021 Jul 5. doi: 10.7554/eLife.60833
PMCID:
PMC8331183
AbstractArticlePDF–8.5M
6.
EPIC: Software Toolkit for Elution Profile-Based Inference of Protein Complexes
Lucas ZhongMing Hu, Florian Goebels, June H. Tan, Eric Wolf, Uros Kuzmanov, Cuihong Wan, Sadhna Phanse, Changjiang Xu, Mike Schertzberg, Andrew G. Fraser, Gary D. Bader, Andrew Emili
Nat Methods. Author manuscript; available in PMC 2021 Mar 26.
Published in final edited form as: Nat Methods. 2019 Aug; 16(8): 737–742. Published online 2019 Jul 15. doi: 10.1038/s41592-019-0461-4
PMCID:
PMC7995176
AbstractArticlePDF–1.0M
7.
RNA polymerase II CTD S2P is dispensable for embryogenesis but mediates exit from developmental diapause in C. elegans
C. Cassart, C. Yague-Sanz, F. Bauer, P. Ponsard, F. X. Stubbe, V. Migeot, M. Wery, A. Morillon, F. Palladino, V. Robert, D. Hermand
Sci Adv. 2020 Dec; 6(50): eabc1450. Published online 2020 Dec 9. doi: 10.1126/sciadv.abc1450
PMCID:
PMC7725455
AbstractArticlePDF–3.9M
8.
LSM2-8 and XRN-2 contribute to the silencing of H3K27me3-marked genes through targeted RNA decay
Anna Mattout, Dimos Gaidatzis, Jan Padeken, Christoph Schmid, Florian Aeschlimann, Véronique Kalck, Susan M. Gasser
Nat Cell Biol. Author manuscript; available in PMC 2020 Oct 6.
Published in final edited form as: Nat Cell Biol. 2020 May; 22(5): 579–590. Published online 2020 Apr 6. doi: 10.1038/s41556-020-0504-1
PMCID:
PMC7212045
AbstractArticlePDF–6.0M
9.
OrthoList 2: A New Comparative Genomic Analysis of Human and Caenorhabditis elegans Genes
Woojin Kim, Ryan S. Underwood, Iva Greenwald, Daniel D. Shaye
Genetics. 2018 Oct; 210(2): 445–461. Published online 2018 Aug 17. doi: 10.1534/genetics.118.301307
PMCID:
PMC6216590
AbstractArticlePDF–1.4M
10.
Two distinct transcription termination modes dictated by promoters
Takashi S. Miki, Sarah H. Carl, Helge Großhans
Genes Dev. 2017 Sep 15; 31(18): 1870–1879. doi: 10.1101/gad.301093.117
PMCID:
PMC5695088
AbstractArticlePDF–5.1M
11.
XRN2 Autoregulation and Control of Polycistronic Gene Expresssion in Caenorhabditis elegans
Takashi S. Miki, Sarah H. Carl, Michael B. Stadler, Helge Großhans
PLoS Genet. 2016 Sep; 12(9): e1006313. Published online 2016 Sep 15. doi: 10.1371/journal.pgen.1006313
PMCID:
PMC5025045
AbstractArticlePDF–10M
12.
The RNA-binding protein repertoire of Arabidopsis thaliana
Claudius Marondedze, Ludivine Thomas, Natalia L. Serrano, Kathryn S. Lilley, Chris Gehring
Sci Rep. 2016; 6: 29766. Published online 2016 Jul 11. doi: 10.1038/srep29766
PMCID:
PMC4942612
AbstractArticlePDF–1.2M
13.
Structural Basis and Function of XRN2-Binding by XTB Domains
Hannes Richter, Iskra Katic, Heinz Gut, Helge Großhans
Nat Struct Mol Biol. Author manuscript; available in PMC 2016 Aug 1.
Published in final edited form as: Nat Struct Mol Biol. 2016 Feb; 23(2): 164–171. Published online 2016 Jan 18. doi: 10.1038/nsmb.3155
PMCID:
PMC4888950
AbstractArticlePDF–1.4M
14.
In Vivo Interaction Proteomics in Caenorhabditis elegans Embryos Provides New Insights into P Granule Dynamics
Jia-Xuan Chen, Patricia G. Cipriani, Desirea Mecenas, Jolanta Polanowska, Fabio Piano, Kristin C. Gunsalus, Matthias Selbach
Mol Cell Proteomics. 2016 May; 15(5): 1642–1657. Published online 2016 Feb 24. doi: 10.1074/mcp.M115.053975
PMCID:
PMC4858945
AbstractArticlePDF–3.1M
15.
miRNAs give worms the time of their lives: small RNAs and Temporal Control in Caenorhabditis elegans
Tamar D. Resnick, Katherine A. McCulloch, Ann E. Rougvie
Dev Dyn. Author manuscript; available in PMC 2016 Jan 4.
Published in final edited form as: Dev Dyn. 2010 May; 239(5): 1477–1489. doi: 10.1002/dvdy.22260
PMCID:
PMC4698981
AbstractArticlePDF–1.1M
16.
EOL-1, the Homolog of the Mammalian Dom3Z, Regulates Olfactory Learning in C. elegans
Yu Shen, Jiangwen Zhang, John A. Calarco, Yun Zhang
J Neurosci. 2014 Oct 1; 34(40): 13364–13370. doi: 10.1523/JNEUROSCI.0230-14.2014
PMCID:
PMC4180473
AbstractArticlePDF–2.3M
17.
Engineering of a conditional allele reveals multiple roles of XRN2 in Caenorhabditis elegans development and substrate specificity in microRNA turnover
Takashi S. Miki, Stefan Rüegger, Dimos Gaidatzis, Michael B. Stadler, Helge Großhans
Nucleic Acids Res. 2014 Apr; 42(6): 4056–4067. Published online 2014 Jan 20. doi: 10.1093/nar/gkt1418
PMCID:
PMC3973323
AbstractArticlePDF–2.4M
18.
OrthoList: A Compendium of C. elegans Genes with Human Orthologs
Daniel D. Shaye, Iva Greenwald
PLoS One. 2011; 6(5): e20085. Published online 2011 May 25. doi: 10.1371/journal.pone.0020085
Correction in:
PLoS One. 2014; 9(1): 10.1371/annotation/f5ffb738-a176-4a43-b0e0-249cdea45fe0.
PMCID:
PMC3102077
AbstractArticlePDF–530K
19.
Efficient target-selected mutagenesis in Caenorhabditis elegans: Toward a knockout for every gene
Edwin Cuppen, Eelke Gort, Esther Hazendonk, Josine Mudde, José van de Belt, Isaäc J. Nijman, Victor Guryev, Ronald H.A. Plasterk
Genome Res. 2007 May; 17(5): 649–658. doi: 10.1101/gr.6080607
PMCID:
PMC1855173
AbstractArticlePDF–674K
20.
A Map of the Interactome Network of the Metazoan C. elegans
Siming Li, Christopher M. Armstrong, Nicolas Bertin, Hui Ge, Stuart Milstein, Mike Boxem, Pierre-Olivier Vidalain, Jing-Dong J. Han, Alban Chesneau, Tong Hao, Debra S. Goldberg, Ning Li, Monica Martinez, Jean-François Rual, Philippe Lamesch, Lai Xu, Muneesh Tewari, Sharyl L. Wong, Lan V. Zhang, Gabriel F. Berriz, Laurent Jacotot, Philippe Vaglio, Jérôme Reboul, Tomoko Hirozane-Kishikawa, Qianru Li, Harrison W. Gabel, Ahmed Elewa, Bridget Baumgartner, Debra J. Rose, Haiyuan Yu, Stephanie Bosak, Reynaldo Sequerra, Andrew Fraser, Susan E. Mango, William M. Saxton, Susan Strome, Sander van den Heuvel, Fabio Piano, Jean Vandenhaute, Claude Sardet, Mark Gerstein, Lynn Doucette-Stamm, Kristin C. Gunsalus, J. Wade Harper, Michael E. Cusick, Frederick P. Roth, David E. Hill, Marc Vidal
Science. Author manuscript; available in PMC 2006 Dec 14.
Published in final edited form as: Science. 2004 Jan 23; 303(5657): 540–543. Published online 2004 Jan 2. doi: 10.1126/science.1091403
PMCID:
PMC1698949
AbstractArticlePDF–1.4M

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