PMC Links for GEO Profiles (Select 19782903) - PMC

Select item 110227501.

Autophagy protein ATG-16.2 and its WD40 domain mediate the beneficial effects of inhibiting early-acting autophagy genes in C. elegans neurons

Yongzhi Yang, Meghan Lee Arnold, Caitlin M. Lange, Ling-Hsuan Sun, Michael Broussalian, Saam Doroodian, Hiroshi Ebata, Elizabeth H. Choy, Karie Poon, Tatiana M. Moreno, Anupama Singh, Monica Driscoll, Caroline Kumsta, Malene Hansen

Nat Aging. Author manuscript; available in PMC 2024 Apr 17.

Published in final edited form as: Nat Aging. 2024 Feb; 4(2): 198–212. Published online 2024 Jan 4. doi: 10.1038/s43587-023-00548-1

PMCID:: PMC11022750

Article PDF–4.4M

Select item 98099482.

SAMS-1 coordinates HLH-30/TFEB and PHA-4/FOXA activities through histone methylation to mediate dietary restriction-induced autophagy and longevity

Chiao-Yin Lim, Huan-Ting Lin, Caroline Kumsta, Tzu-Chiao Lu, Feng-Yung Wang, Yun-Hsuan Kang, Malene Hansen, Tsui-Ting Ching, Ao-Lin Hsu

Autophagy. 2023; 19(1): 224–240. Published online 2022 May 3. doi: 10.1080/15548627.2022.2068267

PMCID:: PMC9809948

Article PDF–4.7M

Select item 84467933.

Interactome analysis of Caenorhabditis elegans synapses by TurboID-based proximity labeling

Murat Artan, Stephen Barratt, Sean M. Flynn, Farida Begum, Mark Skehel, Armel Nicolas, Mario de Bono

J Biol Chem. 2021 Sep; 297(3): 101094. Published online 2021 Aug 18. doi: 10.1016/j.jbc.2021.101094

Correction in:: J Biol Chem. 2022 Jun; 298(6): 102081.

PMCID:: PMC8446793

Article PDF–1.6M

Select item 80040214.

Molecular Basis of Neuronal Autophagy in Ageing: Insights from Caenorhabditis elegans

Georgios Konstantinidis, Nektarios Tavernarakis

Cells. 2021 Mar; 10(3): 694. Published online 2021 Mar 21. doi: 10.3390/cells10030694

PMCID:: PMC8004021

Article PDF–1.0M

Select item 65342875.

Autophagy of germ-granule components, PGL-1 and PGL-3, contributes to DNA damage-induced germ cell apoptosis in C. elegans

Hyemin Min, Yong-Uk Lee, Yhong-Hee Shim, Ichiro Kawasaki

PLoS Genet. 2019 May; 15(5): e1008150. Published online 2019 May 24. doi: 10.1371/journal.pgen.1008150

PMCID:: PMC6534287

Article PDF–4.7M

Select item 64820876.

Maturation and clearance of autophagosomes in neurons depends on a specific cysteine protease isoform, ATG-4.2

Sarah E. Hill, Karlina J. Kauffman, Mia Krout, Janet E. Richmond, Thomas J. Melia, Daniel A. Colón-Ramos

Dev Cell. Author manuscript; available in PMC 2020 Apr 22.

Published in final edited form as: Dev Cell. 2019 Apr 22; 49(2): 251–266.e8. Published online 2019 Mar 14. doi: 10.1016/j.devcel.2019.02.013

PMCID:: PMC6482087

Article PDF–2.3M

Select item 62165907.

OrthoList 2: A New Comparative Genomic Analysis of Human and Caenorhabditis elegans Genes

Woojin Kim, Ryan S. Underwood, Iva Greenwald, Daniel D. Shaye

Genetics. 2018 Oct; 210(2): 445–461. Published online 2018 Aug 17. doi: 10.1534/genetics.118.301307

PMCID:: PMC6216590

Article PDF–1.4M

Select item 54944748.

Molecular definitions of autophagy and related processes

Lorenzo Galluzzi, Eric H Baehrecke, Andrea Ballabio, Patricia Boya, José Manuel Bravo‐San Pedro, Francesco Cecconi, Augustine M Choi, Charleen T Chu, Patrice Codogno, Maria Isabel Colombo, Ana Maria Cuervo, Jayanta Debnath, Vojo Deretic, Ivan Dikic, Eeva‐Liisa Eskelinen, Gian Maria Fimia, Simone Fulda, David A Gewirtz, Douglas R Green, Malene Hansen, J Wade Harper, Marja Jäättelä, Terje Johansen, Gabor Juhasz, Alec C Kimmelman, Claudine Kraft, Nicholas T Ktistakis, Sharad Kumar, Beth Levine, Carlos Lopez‐Otin, Frank Madeo, Sascha Martens, Jennifer Martinez, Alicia Melendez, Noboru Mizushima, Christian Münz, Leon O Murphy, Josef M Penninger, Mauro Piacentini, Fulvio Reggiori, David C Rubinsztein, Kevin M Ryan, Laura Santambrogio, Luca Scorrano, Anna Katharina Simon, Hans‐Uwe Simon, Anne Simonsen, Nektarios Tavernarakis, Sharon A Tooze, Tamotsu Yoshimori, Junying Yuan, Zhenyu Yue, Qing Zhong, Guido Kroemer

EMBO J. 2017 Jul 3; 36(13): 1811–1836. Published online 2017 Jun 8. doi: 10.15252/embj.201796697

PMCID:: PMC5494474

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Select item 37944399.

Extensive Rewiring and Complex Evolutionary Dynamics in a C. elegans Multiparameter Transcription Factor Network

John S. Reece-Hoyes, Carles Pons, Alos Diallo, Akihiro Mori, Shaleen Shrestha, Sreenath Kadreppa, Justin Nelson, Stephanie DiPrima, Amelie Dricot, Bryan R. Lajoie, Philippe Souza Moraes Ribeiro, Matthew T. Weirauch, David E. Hill, Timothy R. Hughes, Chad L. Myers, Albertha J.M. Walhout

Mol Cell. Author manuscript; available in PMC 2013 Oct 10.

Published in final edited form as: Mol Cell. 2013 Jul 11; 51(1): 116–127. Published online 2013 Jun 20. doi: 10.1016/j.molcel.2013.05.018

PMCID:: PMC3794439

Article PDF–5.2M

Select item 354373810.

MiR-34 modulates Caenorhabditis elegans lifespan via repressing the autophagy gene atg9

Jurong Yang, Dapeng Chen, Yani He, Alicia Meléndez, Zhe Feng, Quan Hong, Xueyuan Bai, Qinggang Li, Guangyan Cai, Jianzhong Wang, Xiangmei Chen

Age (Dordr) 2013 Feb; 35(1): 11–22. Published online 2011 Nov 12. doi: 10.1007/s11357-011-9324-3

PMCID:: PMC3543738

Article PDF–575K

Select item 343613011.

Differential Function of the Two Atg4 Homologues in the Aggrephagy Pathway in Caenorhabditis elegans

Fan Wu, Yuping Li, Fuxin Wang, Nobuo N. Noda, Hong Zhang

J Biol Chem. 2012 Aug 24; 287(35): 29457–29467. Published online 2012 Jul 5. doi: 10.1074/jbc.M112.365676

PMCID:: PMC3436130

Article PDF–3.0M

Select item 319118812.

Autophagy and lipid metabolism coordinately modulate lifespan in germline-less C. elegans

Louis R. Lapierre, Sara Gelino, Alicia Meléndez, Malene Hansen

Curr Biol. Author manuscript; available in PMC 2012 Sep 27.

Published in final edited form as: Curr Biol. 2011 Sep 27; 21(18): 1507–1514. Published online 2011 Sep 8. doi: 10.1016/j.cub.2011.07.042

PMCID:: PMC3191188

Article PDF–1014K

Select item 310207713.

OrthoList: A Compendium of C. elegans Genes with Human Orthologs

Daniel D. Shaye, Iva Greenwald

PLoS One. 2011; 6(5): e20085. Published online 2011 May 25. doi: 10.1371/journal.pone.0020085

Correction in:: PLoS One. 2014; 9(1): 10.1371/annotation/f5ffb738-a176-4a43-b0e0-249cdea45fe0.

PMCID:: PMC3102077

Article PDF–530K

Select item 305792314.

Empirically-controlled mapping of the Caenorhabditis elegans protein-protein interactome network

Nicolas Simonis, Jean-François Rual, Anne-Ruxandra Carvunis, Murat Tasan, Irma Lemmens, Tomoko Hirozane-Kishikawa, Tong Hao, Julie M Sahalie, Kavitha Venkatesan, Fana Gebreab, Sebiha Cevik, Niels Klitgord, Changyu Fan, Pascal Braun, Ning Li, Nono Ayivi-Guedehoussou, Elizabeth Dann, Nicolas Bertin, David Szeto, Amélie Dricot, Muhammed A Yildirim, Chenwei Lin, Anne-Sophie de Smet, Huey-Ling Kao, Christophe Simon, Alex Smolyar, Jin Sook Ahn, Muneesh Tewari, Mike Boxem, Stuart Milstein, Haiyuan Yu, Matija Dreze, Jean Vandenhaute, Kristin C Gunsalus, Michael E Cusick, David E Hill, Jan Tavernier, Frederick P Roth, Marc Vidal

Nat Methods. Author manuscript; available in PMC 2011 Mar 15.

Published in final edited form as: Nat Methods. 2009 Jan; 6(1): 47–54. doi: 10.1038/nmeth.1279

PMCID:: PMC3057923

Article PDF–3.0M

Select item 169894915.

A Map of the Interactome Network of the Metazoan C. elegans

Siming Li, Christopher M. Armstrong, Nicolas Bertin, Hui Ge, Stuart Milstein, Mike Boxem, Pierre-Olivier Vidalain, Jing-Dong J. Han, Alban Chesneau, Tong Hao, Debra S. Goldberg, Ning Li, Monica Martinez, Jean-François Rual, Philippe Lamesch, Lai Xu, Muneesh Tewari, Sharyl L. Wong, Lan V. Zhang, Gabriel F. Berriz, Laurent Jacotot, Philippe Vaglio, Jérôme Reboul, Tomoko Hirozane-Kishikawa, Qianru Li, Harrison W. Gabel, Ahmed Elewa, Bridget Baumgartner, Debra J. Rose, Haiyuan Yu, Stephanie Bosak, Reynaldo Sequerra, Andrew Fraser, Susan E. Mango, William M. Saxton, Susan Strome, Sander van den Heuvel, Fabio Piano, Jean Vandenhaute, Claude Sardet, Mark Gerstein, Lynn Doucette-Stamm, Kristin C. Gunsalus, J. Wade Harper, Michael E. Cusick, Frederick P. Roth, David E. Hill, Marc Vidal

Science. Author manuscript; available in PMC 2006 Dec 14.

Published in final edited form as: Science. 2004 Jan 23; 303(5657): 540–543. Published online 2004 Jan 2. doi: 10.1126/science.1091403

PMCID:: PMC1698949

Article PDF–1.4M

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