PMC Links for GEO Profiles (Select 20210066) - PMC

Seesandra V. Rajagopala, Patricia Sikorski, Ashwani Kumar, Roberto Mosca, James Vlasblom, Roland Arnold, Jonathan Franca-Koh, Suman B. Pakala, Sadhna Phanse, Arnaud Ceol, Roman Häuser, Gabriella Siszler, Stefan Wuchty, Andrew Emili, Mohan Babu, Patrick Aloy, Rembert Pieper, Peter Uetz

Nat Biotechnol. Author manuscript; available in PMC 2014 Sep 1.

Published in final edited form as: Nat Biotechnol. 2014 Mar; 32(3): 285–290. Published online 2014 Feb 23. doi: 10.1038/nbt.2831

PMCID:: PMC4123855

Abstract Article PDF–1.1M

Select item 28592486.

Activation of σ²⁸-dependent transcription in Escherichia coli by the cyclic AMP receptor protein requires an unusual promoter organization

Kerry Hollands, David J Lee, Georgina S Lloyd, Stephen J W Busby

Mol Microbiol. 2010 Mar; 75(5): 1098–1111. Published online 2009 Nov 4. doi: 10.1111/j.1365-2958.2009.06913.x

PMCID:: PMC2859248

Abstract Article PDF–685K

Select item 28186297.

Benchmarking yeast two-hybrid systems using the interactions of bacterial motility proteins

Seesandra Venkatappa Rajagopala, Kelly T. Hughes, Peter Uetz

Proteomics. Author manuscript; available in PMC 2010 Feb 9.

Published in final edited form as: Proteomics. 2009 Dec; 9(23): 5296. doi: 10.1002/pmic.200900282

PMCID:: PMC2818629

Abstract Article PDF–1.4M

Select item 28064828.

DksA and ppGpp Directly Regulate Transcription of the Escherichia coli Flagellar Cascade

Justin J. Lemke, Tim Durfee, Richard L. Gourse

Mol Microbiol. Author manuscript; available in PMC 2010 Dec 1.

Published in final edited form as: Mol Microbiol. 2009 Dec; 74(6): 1368–1379. Published online 2009 Nov 2. doi: 10.1111/j.1365-2958.2009.06939.x

PMCID:: PMC2806482

Abstract Article PDF–1.9M

Select item 27644989.

Promoter recognition by bacterial alternative σ factors: the price of high selectivity?

Andrey Feklistov, Seth A. Darst

Genes Dev. 2009 Oct 15; 23(20): 2371–2375. doi: 10.1101/gad.1862609

PMCID:: PMC2764498

Abstract Article PDF–197K

Select item 276449410.

Reduced capacity of alternative σs to melt promoters ensures stringent promoter recognition

Byoung-Mo Koo, Virgil A. Rhodius, Gen Nonaka, Pieter L. deHaseth, Carol A. Gross

Genes Dev. 2009 Oct 15; 23(20): 2426–2436. doi: 10.1101/gad.1843709

PMCID:: PMC2764494

Abstract Article PDF–733K

Select item 275607911.

Mutational analysis of Escherichia coli σ²⁸ and its target promoters reveal recognition of a composite −10 region, comprised of an “extended −10 motif” and a core-10 element

Byoung-Mo Koo, Virgil A. Rhodius, Elizabeth A. Campbell, Carol A. Gross

Mol Microbiol. Author manuscript; available in PMC 2009 Oct 2.

Published in final edited form as: Mol Microbiol. 2009 May; 72(4): 830–843. Published online 2009 Apr 14. doi: 10.1111/j.1365-2958.2009.06691.x

PMCID:: PMC2756079

Abstract Article PDF–2.1M

Select item 233017912.

Preparation and preliminary X-ray diffraction analysis of crystals of bacterial flagellar sigma factor σ²⁸ in complex with the σ²⁸-binding region of its antisigma factor, FlgM

Kengo Okada, Hisako Ichihara, Hiroyuki Takahashi, Nobuyuki Fujita, Akira Ishihama, Toshio Hakoshima

Acta Crystallogr Sect F Struct Biol Cryst Commun. 2007 Mar 1; 63(Pt 3): 196–199. Published online 2007 Feb 10. doi: 10.1107/S174430910700509X

PMCID:: PMC2330179

Abstract Article PDF–156K

Select item 222983713.

Mutations in two global regulators lower individual mortality in Escherichia coli

Fanette Fontaine, Eric J Stewart, Ariel B Lindner, François Taddei

Mol Microbiol. 2008 Jan; 67(1): 2–14. Published online 2007 Nov 25. doi: 10.1111/j.1365-2958.2007.05988.x

PMCID:: PMC2229837

Abstract Article PDF–597K

Select item 179730914.

Genome-Wide Screening of Genes Required for Swarming Motility in Escherichia coli K-12

Tetsuyoshi Inoue, Ryuji Shingaki, Shotaro Hirose, Kaori Waki, Hirotada Mori, Kazuhiro Fukui

J Bacteriol. 2007 Feb; 189(3): 950–957. Published online 2006 Nov 22. doi: 10.1128/JB.01294-06

PMCID:: PMC1797309

Abstract Article PDF–141K

Select item 169818315.

In Silico Prediction and Functional Validation of σ²⁸-Regulated Genes in Chlamydia and Escherichia coli

Hilda Hiu Yin Yu, Dennis Kibler, Ming Tan

J Bacteriol. 2006 Dec; 188(23): 8206–8212. Published online 2006 Sep 22. doi: 10.1128/JB.01082-06

PMCID:: PMC1698183

Abstract Article PDF–572K

Select item 168148116.

Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110

Koji Hayashi, Naoki Morooka, Yoshihiro Yamamoto, Katsutoshi Fujita, Katsumi Isono, Sunju Choi, Eiichi Ohtsubo, Tomoya Baba, Barry L Wanner, Hirotada Mori, Takashi Horiuchi

Mol Syst Biol. 2006; 2: 2006.0007. Published online 2006 Feb 21. doi: 10.1038/msb4100049

PMCID:: PMC1681481

Abstract Article PDF–141K

Select item 168145617.

A coherent feed-forward loop with a SUM input function prolongs flagella expression in Escherichia coli

Shiraz Kalir, Shmoolik Mangan, Uri Alon

Mol Syst Biol. 2005; 1: 2005.0006. Published online 2005 Mar 29. doi: 10.1038/msb4100010

PMCID:: PMC1681456

Abstract Article PDF–212K

Select item 154003418.

Mutational Analysis of the Promoter Recognized by Chlamydia and Escherichia coli σ²⁸ RNA Polymerase

Hilda Hiu Yin Yu, Elizabeth G. Di Russo, Megan A. Rounds, Ming Tan

J Bacteriol. 2006 Aug; 188(15): 5524–5531. doi: 10.1128/JB.00480-06

PMCID:: PMC1540034

Abstract Article PDF–398K

Select item 145705219.

Large-scale identification of protein–protein interaction of Escherichia coli K-12

Mohammad Arifuzzaman, Maki Maeda, Aya Itoh, Kensaku Nishikata, Chiharu Takita, Rintaro Saito, Takeshi Ara, Kenji Nakahigashi, Hsuan-Cheng Huang, Aki Hirai, Kohei Tsuzuki, Seira Nakamura, Mohammad Altaf-Ul-Amin, Taku Oshima, Tomoya Baba, Natsuko Yamamoto, Tomoyo Kawamura, Tomoko Ioka-Nakamichi, Masanari Kitagawa, Masaru Tomita, Shigehiko Kanaya, Chieko Wada, Hirotada Mori

Genome Res. 2006 May; 16(5): 686–691. doi: 10.1101/gr.4527806

PMCID:: PMC1457052

Abstract Article PDF–536K

Select item 132520020.

Escherichia coli K-12: a cooperatively developed annotation snapshot—2005

Monica Riley, Takashi Abe, Martha B. Arnaud, Mary K.B. Berlyn, Frederick R. Blattner, Roy R. Chaudhuri, Jeremy D. Glasner, Takashi Horiuchi, Ingrid M. Keseler, Takehide Kosuge, Hirotada Mori, Nicole T. Perna, Guy Plunkett, III, Kenneth E. Rudd, Margrethe H. Serres, Gavin H. Thomas, Nicholas R. Thomson, David Wishart, Barry L. Wanner

Nucleic Acids Res. 2006; 34(1): 1–9. Published online 2006 Jan 5. doi: 10.1093/nar/gkj405