PMC Links for GEO Profiles (Select 20215312) - PMC

Result Filters

Links from GEO Profiles

Items: 1 to 20 of 54

<< First< Prev

Page of 3

Select item 73170451.

Interactions between DksA and Stress-Responsive Alternative Sigma Factors Control Inorganic Polyphosphate Accumulation in Escherichia coli

Michael J. Gray

J Bacteriol. 2020 Jul; 202(14): e00133-20. Prepublished online 2020 Apr 27. Published online 2020 Jun 25. doi: 10.1128/JB.00133-20

PMCID:: PMC7317045

Article PDF–694K

Select item 70283712.

Delayed inhibition mechanism for secondary channel factor regulation of ribosomal RNA transcription

Sarah K Stumper, Harini Ravi, Larry J Friedman, Rachel Anne Mooney, Ivan R Corrêa, Jnr, Anne Gershenson, Robert Landick, Jeff Gelles

eLife. 2019; 8: e40576. Published online 2019 Feb 5. doi: 10.7554/eLife.40576

PMCID:: PMC7028371

Article PDF–1.9M

Select item 64883713.

DksA–RNA polymerase interactions support new origin formation and DNA repair in Escherichia coli

Kamila K. Myka, Kira Küsters, Robert Washburn, Max E. Gottesman

Mol Microbiol. 2019 May; 111(5): 1382–1397. Published online 2019 Mar 22. doi: 10.1111/mmi.14227

PMCID:: PMC6488371

Article PDF–1.3M

Select item 64568644.

Inorganic Polyphosphate Accumulation in Escherichia coli Is Regulated by DksA but Not by (p)ppGpp

Michael J. Gray

J Bacteriol. 2019 May 1; 201(9): e00664-18. Prepublished online 2019 Feb 11. Published online 2019 Apr 9. doi: 10.1128/JB.00664-18

PMCID:: PMC6456864

Article PDF–580K

Select item 63668615.

Affinity-based capture and identification of protein effectors of the growth regulator ppGpp

Boyuan Wang, Peng Dai, David Ding, Amanda Del Rosario, Robert A. Grant, Bradley L. Pentelute, Michael T. Laub

Nat Chem Biol. Author manuscript; available in PMC 2019 Jun 17.

Published in final edited form as: Nat Chem Biol. 2019 Feb; 15(2): 141–150. Published online 2018 Dec 17. doi: 10.1038/s41589-018-0183-4

Correction in:: Nat Chem Biol. 2019 May 10

PMCID:: PMC6366861

Article PDF–2.2M

Select item 62654616.

Region 3.2 of the σ factor controls the stability of rRNA promoter complexes and potentiates their repression by DksA

Danil Pupov, Ivan Petushkov, Daria Esyunina, Katsuhiko S Murakami, Andrey Kulbachinskiy

Nucleic Acids Res. 2018 Nov 30; 46(21): 11477–11487. Published online 2018 Oct 13. doi: 10.1093/nar/gky919

PMCID:: PMC6265461

Article PDF–3.4M

Select item 60248157.

The E. coli Global Regulator DksA Reduces Transcription during T4 Infection

Jennifer Patterson-West, Tamara D. James, Llorenç Fernández-Coll, James R. Iben, Kyung Moon, Leslie Knipling, Michael Cashel, Deborah M. Hinton

Viruses. 2018 Jun; 10(6): 308. Published online 2018 Jun 6. doi: 10.3390/v10060308

PMCID:: PMC6024815

Article PDF–5.7M

Select item 58378188.

Allosteric effector ppGpp potentiates the inhibition of transcript initiation by DksA

Vadim Molodtsov, Elena Sineva, Lu Zhang, Xuhui Huang, Michael Cashel, Sarah E. Ades, Katsuhiko S. Murakami

Mol Cell. Author manuscript; available in PMC 2019 Mar 1.

Published in final edited form as: Mol Cell. 2018 Mar 1; 69(5): 828–839.e5. Published online 2018 Feb 22. doi: 10.1016/j.molcel.2018.01.035

PMCID:: PMC5837818

Article PDF–1.4M

Select item 57172159.

Stringent Response Regulators Contribute to Recovery from Glucose Phosphate Stress in Escherichia coli

Julie R. Kessler, Brandi L. Cobe, Gregory R. Richards

Appl Environ Microbiol. 2017 Dec 15; 83(24): e01636-17. Prepublished online 2017 Oct 6. Published online 2017 Dec 1. doi: 10.1128/AEM.01636-17

PMCID:: PMC5717215

Article PDF–1.8M

Select item 552272910.

An insertion in the catalytic trigger loop gates the secondary channel of RNA polymerase

Ran Furman, Oleg V. Tsodikov, Yuri I. Wolf, Irina Artsimovitch

J Mol Biol. Author manuscript; available in PMC 2017 Jul 23.

Published in final edited form as: J Mol Biol. 2013 Jan 9; 425(1): 82–93. Published online 2012 Nov 9. doi: 10.1016/j.jmb.2012.11.008

PMCID:: PMC5522729

Article PDF–2.5M

Select item 491244011.

ppGpp binding to a site at the RNAP-DksA interface accounts for its dramatic effects on transcription initiation during the stringent response

Wilma Ross, Patricia Sanchez-Vazquez, Albert Y. Chen, Jeong-Hyun Lee, Hector L. Burgos, Richard L. Gourse

Mol Cell. Author manuscript; available in PMC 2017 Jun 16.

Published in final edited form as: Mol Cell. 2016 Jun 16; 62(6): 811–823. Published online 2016 May 26. doi: 10.1016/j.molcel.2016.04.029

PMCID:: PMC4912440

Article PDF–2.8M

Select item 468757312.

DksA regulates RNA polymerase in Escherichia coli through a network of interactions in the secondary channel that includes Sequence Insertion 1

Andrey Parshin, Anthony L. Shiver, Jookyung Lee, Maria Ozerova, Dina Schneidman-Duhovny, Carol A. Gross, Sergei Borukhov

Proc Natl Acad Sci U S A. 2015 Dec 15; 112(50): E6862–E6871. Published online 2015 Nov 24. doi: 10.1073/pnas.1521365112

Correction in:: Proc Natl Acad Sci U S A. 2016 Jan 5; 113(1): E103.

PMCID:: PMC4687573

Article PDF–2.3M

Select item 466638713.

DksA involvement in transcription fidelity buffers stochastic epigenetic change

Dominik Satory, Alasdair J. E. Gordon, Mengyu Wang, Jennifer A. Halliday, Ido Golding, Christophe Herman

Nucleic Acids Res. 2015 Dec 2; 43(21): 10190–10199. Published online 2015 Aug 24. doi: 10.1093/nar/gkv839

PMCID:: PMC4666387

Article PDF–3.1M

Select item 449738014.

Co-ordinated regulation of the extracytoplasmic stress factor, sigmaE, with other Escherichia coli sigma factors by (p)ppGpp and DksA may be achieved by specific regulation of individual holoenzymes

Saumya Gopalkrishnan, Herve Nicoloff, Sarah E. Ades

Mol Microbiol. Author manuscript; available in PMC 2015 Aug 1.

Published in final edited form as: Mol Microbiol. 2014 Aug; 93(3): 479–493. Published online 2014 Jul 10. doi: 10.1111/mmi.12674

PMCID:: PMC4497380

Article PDF–4.6M

Select item 444644115.

New insights into the regulatory mechanisms of ppGpp and DksA on Escherichia coli RNA polymerase–promoter complex

Nicola Doniselli, Piere Rodriguez-Aliaga, Davide Amidani, Jorge A. Bardales, Carlos Bustamante, Daniel G. Guerra, Claudio Rivetti

Nucleic Acids Res. 2015 May 26; 43(10): 5249–5262. Published online 2015 Apr 27. doi: 10.1093/nar/gkv391

PMCID:: PMC4446441

Article PDF–4.9M

Select item 412385516.

The binary protein-protein interaction landscape of Escherichia coli

Seesandra V. Rajagopala, Patricia Sikorski, Ashwani Kumar, Roberto Mosca, James Vlasblom, Roland Arnold, Jonathan Franca-Koh, Suman B. Pakala, Sadhna Phanse, Arnaud Ceol, Roman Häuser, Gabriella Siszler, Stefan Wuchty, Andrew Emili, Mohan Babu, Patrick Aloy, Rembert Pieper, Peter Uetz

Nat Biotechnol. Author manuscript; available in PMC 2014 Sep 1.

Published in final edited form as: Nat Biotechnol. 2014 Mar; 32(3): 285–290. Published online 2014 Feb 23. doi: 10.1038/nbt.2831

PMCID:: PMC4123855

Article PDF–1.1M

Select item 375475417.

Characterization of a Novel RNA Polymerase Mutant That Alters DksA Activity

Dominik Satory, Jennifer A. Halliday, Priya Sivaramakrishnan, Rhonald C. Lua, Christophe Herman

J Bacteriol. 2013 Sep; 195(18): 4187–4194. doi: 10.1128/JB.00382-13

PMCID:: PMC3754754

Article PDF–816K

Select item 352162418.

Direct interactions between the coiled-coil tip of DksA and the trigger loop of RNA polymerase mediate transcriptional regulation

Christopher W. Lennon, Wilma Ross, Stephen Martin-Tumasz, Innokenti Toulokhonov, Catherine E. Vrentas, Steven T. Rutherford, Jeong-Hyun Lee, Samuel E. Butcher, Richard L. Gourse

Genes Dev. 2012 Dec 1; 26(23): 2634–2646. doi: 10.1101/gad.204693.112