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Items: 1 to 20 of 28

1.
Transcription Start Site Sequence and Spacing between the −10 Region and the Start Site Affect Reiterative Transcription-Mediated Regulation of Gene Expression in Escherichia coli
Xiaosi Han, Charles L. Turnbough, Jr.
J Bacteriol. 2014 Aug; 196(16): 2912–2920. doi: 10.1128/JB.01753-14
PMCID:
PMC4135645
AbstractArticlePDF–554K
2.
The binary protein-protein interaction landscape of Escherichia coli
Seesandra V. Rajagopala, Patricia Sikorski, Ashwani Kumar, Roberto Mosca, James Vlasblom, Roland Arnold, Jonathan Franca-Koh, Suman B. Pakala, Sadhna Phanse, Arnaud Ceol, Roman Häuser, Gabriella Siszler, Stefan Wuchty, Andrew Emili, Mohan Babu, Patrick Aloy, Rembert Pieper, Peter Uetz
Nat Biotechnol. Author manuscript; available in PMC 2014 Sep 1.
Published in final edited form as: Nat Biotechnol. 2014 Mar; 32(3): 285–290. Published online 2014 Feb 23. doi: 10.1038/nbt.2831
PMCID:
PMC4123855
AbstractArticlePDF–1.1M
3.
Protein Complexes Are under Evolutionary Selection to Assemble via Ordered Pathways
Joseph A. Marsh, Helena Hernández, Zoe Hall, Sebastian E. Ahnert, Tina Perica, Carol V. Robinson, Sarah A. Teichmann
Cell. 2013 Apr 11; 153(2): 461–470. doi: 10.1016/j.cell.2013.02.044
PMCID:
PMC4009401
AbstractArticle
4.
A Combined Theoretical and Experimental Study of the Ammonia Tunnel in Carbamoyl Phosphate Synthetase
Yubo Fan, Liliya Lund, Qiang Shao, Yi-Qin Gao, Frank M. Raushel
J Am Chem Soc. Author manuscript; available in PMC 2010 Jul 29.
Published in final edited form as: J Am Chem Soc. 2009 Jul 29; 131(29): 10211–10219. doi: 10.1021/ja902557r
PMCID:
PMC2748306
AbstractArticlePDF–4.0M
5.
Global Functional Atlas of Escherichia coli Encompassing Previously Uncharacterized Proteins
Pingzhao Hu, Sarath Chandra Janga, Mohan Babu, J. Javier Díaz-Mejía, Gareth Butland, Wenhong Yang, Oxana Pogoutse, Xinghua Guo, Sadhna Phanse, Peter Wong, Shamanta Chandran, Constantine Christopoulos, Anaies Nazarians-Armavil, Negin Karimi Nasseri, Gabriel Musso, Mehrab Ali, Nazila Nazemof, Veronika Eroukova, Ashkan Golshani, Alberto Paccanaro, Jack F Greenblatt, Gabriel Moreno-Hagelsieb, Andrew Emili
PLoS Biol. 2009 Apr; 7(4): e1000096. Published online 2009 Apr 28. doi: 10.1371/journal.pbio.1000096
PMCID:
PMC2672614
AbstractArticle
6.
Resolving the Fluorescence Response of E. coli Carbamoyl Phosphate Synthetase: Mapping Intra- and Inter-Subunit Conformational Changes
Jason L. Johnson, Joseph K. West, Andrew D. L. Nelson, Gregory D. Reinhart
Biochemistry. Author manuscript; available in PMC 2008 Oct 2.
Published in final edited form as: Biochemistry. 2007 Jan 16; 46(2): 387–397. doi: 10.1021/bi061642n
PMCID:
PMC2559813
AbstractArticlePDF–2.3M
7.
Mutation analysis of carbamoyl phosphate synthetase: Does the structurally conserved glutamine amidotransferase triad act as a functional dyad?
Emily J. Hart, Susan G. Powers-Lee
Protein Sci. 2008 Jul; 17(7): 1120–1128. doi: 10.1110/ps.073428008
PMCID:
PMC2442002
AbstractArticlePDF–391K
8.
Regulation of Pyrimidine Biosynthetic Gene Expression in Bacteria: Repression without Repressors
Charles L. Turnbough, Jr., Robert L. Switzer
Microbiol Mol Biol Rev. 2008 Jun; 72(2): 266–300. doi: 10.1128/MMBR.00001-08
PMCID:
PMC2415746
AbstractArticlePDF–1.0M
9.
Protein abundance profiling of the Escherichia coli cytosol
Yasushi Ishihama, Thorsten Schmidt, Juri Rappsilber, Matthias Mann, F Ulrich Hartl, Michael J Kerner, Dmitrij Frishman
BMC Genomics. 2008; 9: 102. Published online 2008 Feb 27. doi: 10.1186/1471-2164-9-102
PMCID:
PMC2292177
AbstractArticlePDF–1.0M
10.
Nucleotide recognition in the ATP-grasp protein carbamoyl phosphate synthetase
Michael Kothe, Susan G. Powers-Lee
Protein Sci. 2004 Feb; 13(2): 466–475. doi: 10.1110/ps.03416804
PMCID:
PMC2286696
AbstractArticlePDF–198K
11.
Long-range allosteric transitions in carbamoyl phosphate synthetase
James B. Thoden, Xinyi Huang, Jungwook Kim, Frank M. Raushel, Hazel M. Holden
Protein Sci. 2004 Sep; 13(9): 2398–2405. doi: 10.1110/ps.04822704
PMCID:
PMC2280008
AbstractArticlePDF–307K
12.
Experimental and Computational Assessment of Conditionally Essential Genes in Escherichia coli
Andrew R. Joyce, Jennifer L. Reed, Aprilfawn White, Robert Edwards, Andrei Osterman, Tomoya Baba, Hirotada Mori, Scott A. Lesely, Bernhard Ø. Palsson, Sanjay Agarwalla
J Bacteriol. 2006 Dec; 188(23): 8259–8271. Published online 2006 Sep 29. doi: 10.1128/JB.00740-06
PMCID:
PMC1698209
AbstractArticlePDF–779K
13.
Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110
Koji Hayashi, Naoki Morooka, Yoshihiro Yamamoto, Katsutoshi Fujita, Katsumi Isono, Sunju Choi, Eiichi Ohtsubo, Tomoya Baba, Barry L Wanner, Hirotada Mori, Takashi Horiuchi
Mol Syst Biol. 2006; 2: 2006.0007. Published online 2006 Feb 21. doi: 10.1038/msb4100049
PMCID:
PMC1681481
AbstractArticlePDF–141K
14.
Large-scale identification of protein–protein interaction of Escherichia coli K-12
Mohammad Arifuzzaman, Maki Maeda, Aya Itoh, Kensaku Nishikata, Chiharu Takita, Rintaro Saito, Takeshi Ara, Kenji Nakahigashi, Hsuan-Cheng Huang, Aki Hirai, Kohei Tsuzuki, Seira Nakamura, Mohammad Altaf-Ul-Amin, Taku Oshima, Tomoya Baba, Natsuko Yamamoto, Tomoyo Kawamura, Tomoko Ioka-Nakamichi, Masanari Kitagawa, Masaru Tomita, Shigehiko Kanaya, Chieko Wada, Hirotada Mori
Genome Res. 2006 May; 16(5): 686–691. doi: 10.1101/gr.4527806
PMCID:
PMC1457052
AbstractArticlePDF–536K
15.
Mutational Analysis of Intervening Sequences Connecting the Binding Sites for Integration Host Factor, PepA, PurR, and RNA Polymerase in the Control Region of the Escherichia coli carAB Operon, Encoding Carbamoylphosphate Synthase
Neel Devroede, Nadine Huysveld, Daniel Charlier
J Bacteriol. 2006 May; 188(9): 3236–3245. doi: 10.1128/JB.188.9.3236-3245.2006
PMCID:
PMC1447446
AbstractArticlePDF–456K
16.
MEROPS: the peptidase database
Neil D. Rawlings, Fraser R. Morton, Alan J. Barrett
Nucleic Acids Res. 2006 Jan 1; 34(Database issue): D270–D272. Published online 2005 Dec 28. doi: 10.1093/nar/gkj089
PMCID:
PMC1347452
AbstractArticlePDF–55K
17.
Escherichia coli K-12: a cooperatively developed annotation snapshot—2005
Monica Riley, Takashi Abe, Martha B. Arnaud, Mary K.B. Berlyn, Frederick R. Blattner, Roy R. Chaudhuri, Jeremy D. Glasner, Takashi Horiuchi, Ingrid M. Keseler, Takehide Kosuge, Hirotada Mori, Nicole T. Perna, Guy Plunkett, III, Kenneth E. Rudd, Margrethe H. Serres, Gavin H. Thomas, Nicholas R. Thomson, David Wishart, Barry L. Wanner
Nucleic Acids Res. 2006; 34(1): 1–9. Published online 2006 Jan 5. doi: 10.1093/nar/gkj405
PMCID:
PMC1325200
AbstractArticlePDF–204K
18.
The carB gene of Escherichia coli: a duplicated gene coding for the large subunit of carbamoyl-phosphate synthetase.
H Nyunoya, C J Lusty
Proc Natl Acad Sci U S A. 1983 Aug; 80(15): 4629–4633. doi: 10.1073/pnas.80.15.4629
PMCID:
PMC384097
SummaryPage BrowsePDF–1015K
19.
Multiple regulatory signals in the control region of the Escherichia coli carAB operon.
J Bouvier, J C Patte, P Stragier
Proc Natl Acad Sci U S A. 1984 Jul; 81(13): 4139–4143. doi: 10.1073/pnas.81.13.4139
PMCID:
PMC345384
SummaryPage BrowsePDF–1.0M
20.
DNA sequence of the carA gene and the control region of carAB: tandem promoters, respectively controlled by arginine and the pyrimidines, regulate the synthesis of carbamoyl-phosphate synthetase in Escherichia coli K-12.
J Piette, H Nyunoya, C J Lusty, R Cunin, G Weyens, M Crabeel, D Charlier, N Glansdorff, A Piérard
Proc Natl Acad Sci U S A. 1984 Jul; 81(13): 4134–4138. doi: 10.1073/pnas.81.13.4134
PMCID:
PMC345383
SummaryPage BrowsePDF–1.1M

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