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Items: 1 to 20 of 24

1.
Cotranscriptional R-loop formation by Mfd involves topological partitioning of DNA
James R. Portman, Gwendolyn M. Brouwer, Jack Bollins, Nigel J. Savery, Terence R. Strick
Proc Natl Acad Sci U S A. 2021 Apr 13; 118(15): e2019630118. Published online 2021 Apr 7. doi: 10.1073/pnas.2019630118
PMCID:
PMC8053947
AbstractArticlePDF–1.2M
2.
Structural basis for transcription complex disruption by the Mfd translocase
Jin Young Kang, Eliza Llewellyn, James Chen, Paul Dominic B Olinares, Joshua Brewer, Brian T Chait, Elizabeth A Campbell, Seth A Darst
eLife. 2021; 10: e62117. Published online 2021 Jan 22. doi: 10.7554/eLife.62117
PMCID:
PMC7864632
AbstractArticlePDF–6.7M
3.
The transcription-repair coupling factor Mfd associates with RNA polymerase in the absence of exogenous damage
Han N. Ho, Antoine M. van Oijen, Harshad Ghodke
Nat Commun. 2018; 9: 1570. Published online 2018 Apr 20. doi: 10.1038/s41467-018-03790-z
PMCID:
PMC5910403
AbstractArticlePDF–1.6M
4.
Mfd Dynamically Regulates Transcription via a Release and Catch-up Mechanism
Tung T. Le, Yi Yang, Chuang Tan, Margaret M. Suhanovsky, Robert M. Fulbright, Jr., James T. Inman, Ming Li, Jaeyoon Lee, Sarah Perelman, Jeffrey W. Roberts, Alexandra M. Deaconescu, Michelle D. Wang
Cell. Author manuscript; available in PMC 2019 Jan 11.
Published in final edited form as: Cell. 2018 Jan 11; 172(1-2): 344–357.e15. Published online 2017 Dec 7. doi: 10.1016/j.cell.2017.11.017
Correction in:
Cell. 2018 Jun 14; 173(7): 1823.
PMCID:
PMC5766421
AbstractArticlePDF–2.3M
5.
Stalled transcription complexes promote DNA repair at a distance
Nia M. Haines, Young-In T. Kim, Abigail J. Smith, Nigel J. Savery
Proc Natl Acad Sci U S A. 2014 Mar 18; 111(11): 4037–4042. Published online 2014 Feb 19. doi: 10.1073/pnas.1322350111
PMCID:
PMC3964087
AbstractArticlePDF–905K
6.
Initiation of transcription-coupled repair characterized at single-molecule resolution
Kévin Ho Wan, Abigail Smith, Lars Westblade, Nicolas Joly, Wilfried Grange, Sylvain Zorman, Seth Darst, Nigel Savery, Terence Strick
Nature. Author manuscript; available in PMC 2013 Apr 18.
Published in final edited form as: Nature. 2012 Oct 18; 490(7420): 431–434. Published online 2012 Sep 9. doi: 10.1038/nature11430
PMCID:
PMC3475728
AbstractArticlePDF–1.4M
7.
Nucleotide excision repair (NER) machinery recruitment by the transcription-repair coupling factor involves unmasking of a conserved intramolecular interface
Alexandra M. Deaconescu, Anastasia Sevostyanova, Irina Artsimovitch, Nikolaus Grigorieff
Proc Natl Acad Sci U S A. 2012 Feb 28; 109(9): 3353–3358. Published online 2012 Feb 13. doi: 10.1073/pnas.1115105109
PMCID:
PMC3295266
AbstractArticlePDF–1.0M
8.
Derepression of Bacterial Transcription-Repair Coupling Factor is Associated with a Profound Conformational Change
Devendra B. Srivastava, Seth A. Darst
J Mol Biol. Author manuscript; available in PMC 2012 Feb 18.
Published in final edited form as: J Mol Biol. 2011 Feb 18; 406(2): 275–284. Published online 2010 Dec 23. doi: 10.1016/j.jmb.2010.12.004
PMCID:
PMC3031748
AbstractArticlePDF–1.7M
9.
Controlled degradation by ClpXP protease tunes the levels of the excision repair protein UvrA to the extent of DNA damage
Mihaela Pruteanu, Tania A. Baker
Mol Microbiol. Author manuscript; available in PMC 2010 May 11.
Published in final edited form as: Mol Microbiol. 2009 Feb; 71(4): 912–924. Published online 2008 Dec 18. doi: 10.1111/j.1365-2958.2008.06574.x
PMCID:
PMC2867671
AbstractArticlePDF–1.1M
10.
The bacterial transcription-repair coupling factor
Alexandra M. Deaconescu, Nigel Savery, Seth A. Darst
Curr Opin Struct Biol. Author manuscript; available in PMC 2009 Oct 5.
Published in final edited form as: Curr Opin Struct Biol. 2007 Feb; 17(1): 96–102. Published online 2007 Jan 18. doi: 10.1016/j.sbi.2007.01.005
PMCID:
PMC2757452
AbstractArticlePDF–1.6M
11.
Transcription coupled nucleotide excision repair in Escherichia coli can be affected by changing the arginine at position 529 of the β subunit of RNA polymerase
Ann K. Ganesan, Abigail J. Smith, Nigel J. Savery, Portia Zamos, Philip C. Hanawalt
DNA Repair (Amst) Author manuscript; available in PMC 2008 Nov 4.
Published in final edited form as: DNA Repair (Amst). 2007 Oct 1; 6(10): 1434–1440. Published online 2007 May 25. doi: 10.1016/j.dnarep.2007.04.002
PMCID:
PMC2578841
AbstractArticlePDF–820K
12.
Protein abundance profiling of the Escherichia coli cytosol
Yasushi Ishihama, Thorsten Schmidt, Juri Rappsilber, Matthias Mann, F Ulrich Hartl, Michael J Kerner, Dmitrij Frishman
BMC Genomics. 2008; 9: 102. Published online 2008 Feb 27. doi: 10.1186/1471-2164-9-102
PMCID:
PMC2292177
AbstractArticlePDF–1.0M
13.
Crystallization and preliminary structure determination of Escherichia coli Mfd, the transcription-repair coupling factor
Alexandra M. Deaconescu, Seth A. Darst
Acta Crystallogr Sect F Struct Biol Cryst Commun. 2005 Dec 1; 61(Pt 12): 1062–1064. Published online 2005 Nov 24. doi: 10.1107/S1744309105035876
PMCID:
PMC1978150
AbstractArticlePDF–361K
14.
Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110
Koji Hayashi, Naoki Morooka, Yoshihiro Yamamoto, Katsutoshi Fujita, Katsumi Isono, Sunju Choi, Eiichi Ohtsubo, Tomoya Baba, Barry L Wanner, Hirotada Mori, Takashi Horiuchi
Mol Syst Biol. 2006; 2: 2006.0007. Published online 2006 Feb 21. doi: 10.1038/msb4100049
PMCID:
PMC1681481
AbstractArticlePDF–141K
15.
Escherichia coli K-12: a cooperatively developed annotation snapshot—2005
Monica Riley, Takashi Abe, Martha B. Arnaud, Mary K.B. Berlyn, Frederick R. Blattner, Roy R. Chaudhuri, Jeremy D. Glasner, Takashi Horiuchi, Ingrid M. Keseler, Takehide Kosuge, Hirotada Mori, Nicole T. Perna, Guy Plunkett, III, Kenneth E. Rudd, Margrethe H. Serres, Gavin H. Thomas, Nicholas R. Thomson, David Wishart, Barry L. Wanner
Nucleic Acids Res. 2006; 34(1): 1–9. Published online 2006 Jan 5. doi: 10.1093/nar/gkj405
PMCID:
PMC1325200
AbstractArticlePDF–204K
16.
RNA polymerase mutants defective in the initiation of transcription-coupled DNA repair
A. J. Smith, N. J. Savery
Nucleic Acids Res. 2005; 33(2): 755–764. Published online 2005 Feb 1. doi: 10.1093/nar/gki225
PMCID:
PMC548365
AbstractArticlePDF–2.6M
17.
Two clustered 8-oxo-7,8-dihydroguanine (8-oxodG) lesions increase the point mutation frequency of 8-oxodG, but do not result in double strand breaks or deletions in Escherichia coli
Svitlana Malyarchuk, Katherine L. Brame, Reneau Youngblood, Runhua Shi, Lynn Harrison
Nucleic Acids Res. 2004; 32(19): 5721–5731. Published online 2004 Oct 27. doi: 10.1093/nar/gkh911
PMCID:
PMC528796
AbstractArticlePDF–217K
18.
Mechanisms of transcription-repair coupling and mutation frequency decline.
C P Selby, A Sancar
Microbiol Rev. 1994 Sep; 58(3): 317–329. doi: 10.1128/mr.58.3.317-329.1994
PMCID:
PMC372971
SummaryPage BrowsePDF–2.8M
19.
A DNA translocation motif in the bacterial transcription–repair coupling factor, Mfd
A. L. Chambers, A. J. Smith, N. J. Savery
Nucleic Acids Res. 2003 Nov 15; 31(22): 6409–6418. doi: 10.1093/nar/gkg868
PMCID:
PMC275562
AbstractArticlePDF–248K
20.
Transcription-repair coupling and mutation frequency decline.
C P Selby, A Sancar
J Bacteriol. 1993 Dec; 175(23): 7509–7514. doi: 10.1128/jb.175.23.7509-7514.1993
PMCID:
PMC206906
SummaryPage BrowsePDF–1.2M

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