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Select item 44472501.

Temporal Hierarchy of Gene Expression Mediated by Transcription Factor Binding Affinity and Activation Dynamics

Rong Gao, Ann M. Stock

mBio. 2015 May-Jun; 6(3): e00686-15. Published online 2015 May 26. doi: 10.1128/mBio.00686-15

PMCID:: PMC4447250

Abstract Article PDF–556K

Select item 41238552.

The binary protein-protein interaction landscape of Escherichia coli

Seesandra V. Rajagopala, Patricia Sikorski, Ashwani Kumar, Roberto Mosca, James Vlasblom, Roland Arnold, Jonathan Franca-Koh, Suman B. Pakala, Sadhna Phanse, Arnaud Ceol, Roman Häuser, Gabriella Siszler, Stefan Wuchty, Andrew Emili, Mohan Babu, Patrick Aloy, Rembert Pieper, Peter Uetz

Nat Biotechnol. Author manuscript; available in PMC 2014 Sep 1.

Published in final edited form as: Nat Biotechnol. 2014 Mar; 32(3): 285–290. Published online 2014 Feb 23. doi: 10.1038/nbt.2831

PMCID:: PMC4123855

Abstract Article PDF–1.1M

Select item 37246333.

A Link between Dimerization and Autophosphorylation of the Response Regulator PhoB

Rachel L. Creager-Allen, Ruth E. Silversmith, Robert B. Bourret

J Biol Chem. 2013 Jul 26; 288(30): 21755–21769. Published online 2013 Jun 11. doi: 10.1074/jbc.M113.471763

PMCID:: PMC3724633

Abstract Article PDF–2.0M

Select item 36855864.

Mechanism of Activation for Transcription Factor PhoB Suggested by Different Modes of Dimerization in the Inactive and Active States

Priti Bachhawat, GVT Swapna, Ann M Stock

Structure. Author manuscript; available in PMC 2013 Jun 18.

Published in final edited form as: Structure. 2005 Sep; 13(9): 1353–1363. doi: 10.1016/j.str.2005.06.006

PMCID:: PMC3685586

Abstract Article PDF–5.0M

Select item 31737955.

The structure of a transcription activation subcomplex reveals how σ⁷⁰ is recruited to PhoB promoters

Alexandre G Blanco, Albert Canals, Jordi Bernués, Maria Solà, Miquel Coll

EMBO J. 2011 Sep 14; 30(18): 3776–3785. Published online 2011 Aug 9. doi: 10.1038/emboj.2011.271

PMCID:: PMC3173795

Abstract Article PDF–1.7M

Select item 27161216.

Probing the Roles of the Two Different Dimers Mediated by the Receiver Domain of the Response Regulator PhoB

Timothy R. Mack, Rong Gao, Ann M. Stock

J Mol Biol. Author manuscript; available in PMC 2009 Dec 5.

Published in final edited form as: J Mol Biol. 2009 Jun 5; 389(2): 349–364. Published online 2009 Apr 14. doi: 10.1016/j.jmb.2009.04.014

PMCID:: PMC2716121

Abstract Article PDF–2.2M

Select item 27108657.

An integrated network approach identifies the isobutanol response network of Escherichia coli

Mark P Brynildsen, James C Liao

Mol Syst Biol. 2009; 5: 277. Published online 2009 Jun 16. doi: 10.1038/msb.2009.34

PMCID:: PMC2710865

Abstract Article PDF–3.0M

Select item 25868308.

System-level mapping of Escherichia coli response regulator dimerization with FRET hybrids

Rong Gao, Yuan Tao, Ann M Stock

Mol Microbiol. 2008 Sep; 69(6): 1358–1372. Published online 2008 Jul 15. doi: 10.1111/j.1365-2958.2008.06355.x

PMCID:: PMC2586830

Abstract Article PDF–420K

Select item 18552029.

The X-ray crystal structures of two constitutively active mutants of the E. coli PhoB receiver domain give insights into activation

Raquel Arribas-Bosacoma, Soo-Ki Kim, Cristina Ferrer-Orta, Alexandre G. Blanco, Pedro J.B. Pereira, F. Xavier Gomis-Rüth, Barry L. Wanner, Miquel Coll, Maria Solà

J Mol Biol. Author manuscript; available in PMC 2007 Apr 24.

Published in final edited form as: J Mol Biol. 2007 Feb 16; 366(2): 626–641. Published online 2006 Nov 14. doi: 10.1016/j.jmb.2006.11.038

PMCID:: PMC1855202

Abstract Article PDF–985K

Select item 168148110.

Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110

Koji Hayashi, Naoki Morooka, Yoshihiro Yamamoto, Katsutoshi Fujita, Katsumi Isono, Sunju Choi, Eiichi Ohtsubo, Tomoya Baba, Barry L Wanner, Hirotada Mori, Takashi Horiuchi

Mol Syst Biol. 2006; 2: 2006.0007. Published online 2006 Feb 21. doi: 10.1038/msb4100049

PMCID:: PMC1681481

Abstract Article PDF–141K

Select item 152207411.

Regulon and promoter analysis of the E. coli heat-shock factor, σ³², reveals a multifaceted cellular response to heat stress

Gen Nonaka, Matthew Blankschien, Christophe Herman, Carol A. Gross, Virgil A. Rhodius

Genes Dev. 2006 Jul 1; 20(13): 1776–1789. doi: 10.1101/gad.1428206

PMCID:: PMC1522074

Abstract Article PDF–548K

Select item 145705212.

Large-scale identification of protein–protein interaction of Escherichia coli K-12

Mohammad Arifuzzaman, Maki Maeda, Aya Itoh, Kensaku Nishikata, Chiharu Takita, Rintaro Saito, Takeshi Ara, Kenji Nakahigashi, Hsuan-Cheng Huang, Aki Hirai, Kohei Tsuzuki, Seira Nakamura, Mohammad Altaf-Ul-Amin, Taku Oshima, Tomoya Baba, Natsuko Yamamoto, Tomoyo Kawamura, Tomoko Ioka-Nakamichi, Masanari Kitagawa, Masaru Tomita, Shigehiko Kanaya, Chieko Wada, Hirotada Mori

Genome Res. 2006 May; 16(5): 686–691. doi: 10.1101/gr.4527806

PMCID:: PMC1457052

Abstract Article PDF–536K

Select item 132520013.

Escherichia coli K-12: a cooperatively developed annotation snapshot—2005

Monica Riley, Takashi Abe, Martha B. Arnaud, Mary K.B. Berlyn, Frederick R. Blattner, Roy R. Chaudhuri, Jeremy D. Glasner, Takashi Horiuchi, Ingrid M. Keseler, Takehide Kosuge, Hirotada Mori, Nicole T. Perna, Guy Plunkett, III, Kenneth E. Rudd, Margrethe H. Serres, Gavin H. Thomas, Nicholas R. Thomson, David Wishart, Barry L. Wanner

Nucleic Acids Res. 2006; 34(1): 1–9. Published online 2006 Jan 5. doi: 10.1093/nar/gkj405