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Select item 113001741.

Small RNA GadY in Escherichia coli enhances conjugation system of IncP-1 by targeting SdiA

Shebin Zhang, Jiao Long, Qiwei Li, Mo Li, Ruiqi Yu, Yang Lu, Xingyan Ma, Yimei Cai, Cong Shen, Jianming Zeng, Bin Huang, Cha Chen, Jieying Pu

Front Cell Infect Microbiol. 2024; 14: 1445850. Published online 2024 Jul 23. doi: 10.3389/fcimb.2024.1445850

PMCID:: PMC11300174

Abstract Article PDF–5.7M

Select item 50015912.

Protection against deleterious nitrogen compounds: role of σ^S-dependent small RNAs encoded adjacent to sdiA

Yue Hao, Taylor B. Updegrove, Natasha N. Livingston, Gisela Storz

Nucleic Acids Res. 2016 Aug 19; 44(14): 6935–6948. Published online 2016 May 10. doi: 10.1093/nar/gkw404

PMCID:: PMC5001591

Abstract Article PDF–5.5M

Select item 41238553.

The binary protein-protein interaction landscape of Escherichia coli

Seesandra V. Rajagopala, Patricia Sikorski, Ashwani Kumar, Roberto Mosca, James Vlasblom, Roland Arnold, Jonathan Franca-Koh, Suman B. Pakala, Sadhna Phanse, Arnaud Ceol, Roman Häuser, Gabriella Siszler, Stefan Wuchty, Andrew Emili, Mohan Babu, Patrick Aloy, Rembert Pieper, Peter Uetz

Nat Biotechnol. Author manuscript; available in PMC 2014 Sep 1.

Published in final edited form as: Nat Biotechnol. 2014 Mar; 32(3): 285–290. Published online 2014 Feb 23. doi: 10.1038/nbt.2831

PMCID:: PMC4123855

Abstract Article PDF–1.1M

Select item 34163964.

The Acyl Homoserine Lactone Receptor, SdiA, of Escherichia coli and Salmonella enterica Serovar Typhimurium Does Not Respond to Indole

Anice Sabag-Daigle, Jitesh A. Soares, Jenée N. Smith, Mohamed E. Elmasry, Brian M. M. Ahmer

Appl Environ Microbiol. 2012 Aug; 78(15): 5424–5431. doi: 10.1128/AEM.00046-12

PMCID:: PMC3416396

Abstract Article PDF–1.9M

Select item 32092185.

CsrA Represses Translation of sdiA, Which Encodes the N-Acylhomoserine-l-Lactone Receptor of Escherichia coli, by Binding Exclusively within the Coding Region of sdiA mRNA

Helen Yakhnin, Carol S. Baker, Igor Berezin, Michael A. Evangelista, Alisa Rassin, Tony Romeo, Paul Babitzke

J Bacteriol. 2011 Nov; 193(22): 6162–6170. doi: 10.1128/JB.05975-11

PMCID:: PMC3209218

Abstract Article PDF–1.0M

Select item 27865026.

Acyl-Homoserine Lactones Can Induce Virus Production in Lysogenic Bacteria: an Alternative Paradigm for Prophage Induction

Dhritiman Ghosh, Krishnakali Roy, Kurt E. Williamson, Sharath Srinivasiah, K. Eric Wommack, Mark Radosevich

Appl Environ Microbiol. 2009 Nov; 75(22): 7142–7152. Published online 2009 Sep 25. doi: 10.1128/AEM.00950-09

PMCID:: PMC2786502

Abstract Article PDF–1.6M

Select item 26554467.

Reconfiguring the Quorum-Sensing Regulator SdiA of Escherichia coli To Control Biofilm Formation via Indole and N-Acylhomoserine Lactones

Jintae Lee, Toshinari Maeda, Seok Hoon Hong, Thomas K. Wood

Appl Environ Microbiol. 2009 Mar; 75(6): 1703–1716. Published online 2009 Jan 23. doi: 10.1128/AEM.02081-08

PMCID:: PMC2655446

Abstract Article PDF–1.2M

Select item 25474638.

Stochastic Modeling of Gene Positive Autoregulation Networks Involving Signal Molecules

Xin Fang, William E. Bentley, Evanghelos Zafiriou

Biophys J. 2008 Oct 1; 95(7): 3137–3145. Published online 2008 Jul 3. doi: 10.1529/biophysj.107.127175

PMCID:: PMC2547463

Abstract Article PDF–259K

Select item 23739889.

Crystallization and preliminary X-ray studies of SdiA from Escherichia coli

Chunai Wu, Neratur K. Lokanath, Dong Young Kim, Lan Dao Ngoc Nguyen, Kyeong Kyu Kim

Acta Crystallogr Sect F Struct Biol Cryst Commun. 2008 Jan 1; 64(Pt 1): 19–21. Published online 2007 Dec 20. doi: 10.1107/S1744309107059696

PMCID:: PMC2373988

Abstract Article PDF–189K

Select item 224916910.

NMR Detection of Adventitious Xylose Binding to the Quorum-Sensing Protein SdiA of Escherichia coli

Yong Yao, Tobin J. Dickerson, Mark S. Hixon, H. Jane Dyson

Bioorg Med Chem Lett. Author manuscript; available in PMC 2008 Nov 15.

Published in final edited form as: Bioorg Med Chem Lett. 2007 Nov 15; 17(22): 6202–6205. Published online 2007 Sep 8. doi: 10.1016/j.bmcl.2007.09.029

PMCID:: PMC2249169

Abstract Article PDF–955K

Select item 189917611.

Indole is an inter-species biofilm signal mediated by SdiA

Jintae Lee, Arul Jayaraman, Thomas K Wood

BMC Microbiol. 2007; 7: 42. Published online 2007 May 18. doi: 10.1186/1471-2180-7-42

PMCID:: PMC1899176

Abstract Article PDF–593K

Select item 168148112.

Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110

Koji Hayashi, Naoki Morooka, Yoshihiro Yamamoto, Katsutoshi Fujita, Katsumi Isono, Sunju Choi, Eiichi Ohtsubo, Tomoya Baba, Barry L Wanner, Hirotada Mori, Takashi Horiuchi

Mol Syst Biol. 2006; 2: 2006.0007. Published online 2006 Feb 21. doi: 10.1038/msb4100049

PMCID:: PMC1681481

Abstract Article PDF–141K

Select item 132520013.

Escherichia coli K-12: a cooperatively developed annotation snapshot—2005

Monica Riley, Takashi Abe, Martha B. Arnaud, Mary K.B. Berlyn, Frederick R. Blattner, Roy R. Chaudhuri, Jeremy D. Glasner, Takashi Horiuchi, Ingrid M. Keseler, Takehide Kosuge, Hirotada Mori, Nicole T. Perna, Guy Plunkett, III, Kenneth E. Rudd, Margrethe H. Serres, Gavin H. Thomas, Nicholas R. Thomson, David Wishart, Barry L. Wanner

Nucleic Acids Res. 2006; 34(1): 1–9. Published online 2006 Jan 5. doi: 10.1093/nar/gkj405