PMC Links for GEO Profiles (Select 20679192) - PMC

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Items: 15

Select item 43303621.

The ATP-mediated formation of the YgjD–YeaZ–YjeE complex is required for the biosynthesis of tRNA t⁶A in Escherichia coli

Wenhua Zhang, Bruno Collinet, Ludovic Perrochia, Dominique Durand, Herman van Tilbeurgh

Nucleic Acids Res. 2015 Feb 18; 43(3): 1804–1817. Published online 2015 Jan 10. doi: 10.1093/nar/gku1397

PMCID:: PMC4330362

Abstract Article PDF–4.1M

Select item 41238552.

The binary protein-protein interaction landscape of Escherichia coli

Seesandra V. Rajagopala, Patricia Sikorski, Ashwani Kumar, Roberto Mosca, James Vlasblom, Roland Arnold, Jonathan Franca-Koh, Suman B. Pakala, Sadhna Phanse, Arnaud Ceol, Roman Häuser, Gabriella Siszler, Stefan Wuchty, Andrew Emili, Mohan Babu, Patrick Aloy, Rembert Pieper, Peter Uetz

Nat Biotechnol. Author manuscript; available in PMC 2014 Sep 1.

Published in final edited form as: Nat Biotechnol. 2014 Mar; 32(3): 285–290. Published online 2014 Feb 23. doi: 10.1038/nbt.2831

PMCID:: PMC4123855

Abstract Article PDF–1.1M

Select item 33401673.

Biosynthesis of Threonylcarbamoyl Adenosine (t⁶A), a Universal tRNA Nucleoside

Christopher Deutsch, Basma El Yacoubi, Valérie de Crécy-Lagard, Dirk Iwata-Reuyl

J Biol Chem. 2012 Apr 20; 287(17): 13666–13673. Published online 2012 Feb 29. doi: 10.1074/jbc.M112.344028

PMCID:: PMC3340167

Abstract Article PDF–1010K

Select item 31949064.

Effects on Transcription of Mutations in ygjD, yeaZ, and yjeE Genes, Which Are Involved in a Universal tRNA Modification in Escherichia coli

Chika Hashimoto, Kohei Sakaguchi, Yuko Taniguchi, Hirofumi Honda, Taku Oshima, Naotake Ogasawara, Jun-ichi Kato

J Bacteriol. 2011 Nov; 193(21): 6075–6079. doi: 10.1128/JB.05733-11

PMCID:: PMC3194906

Abstract Article PDF–677K

Select item 31158345.

Single-cell time-lapse analysis of depletion of the universally conserved essential protein YgjD

Tobias Bergmiller, Rafael Peña-Miller, Alexander Boehm, Martin Ackermann

BMC Microbiol. 2011; 11: 118. Published online 2011 May 27. doi: 10.1186/1471-2180-11-118

PMCID:: PMC3115834

Abstract Article PDF–625K

Select item 30492056.

The highly conserved KEOPS/EKC complex is essential for a universal tRNA modification, t6A

Madhusudhan Srinivasan, Preeti Mehta, Yao Yu, Evelyn Prugar, Eugene V Koonin, A Wali Karzai, Rolf Sternglanz

EMBO J. 2011 Mar 2; 30(5): 873–881. Published online 2010 Dec 24. doi: 10.1038/emboj.2010.343

PMCID:: PMC3049205

Abstract Article PDF–1.0M

Select item 29325127.

The Ubiquitous Conserved Glycopeptidase Gcp Prevents Accumulation of Toxic Glycated Proteins

Chen Katz, Ifat Cohen-Or, Uri Gophna, Eliora Z. Ron

mBio. 2010 Jul-Aug; 1(3): e00195-10. Published online 2010 Aug 24. doi: 10.1128/mBio.00195-10

PMCID:: PMC2932512

Abstract Article PDF–1.1M

Select item 27607998.

Qri7/OSGEPL, the mitochondrial version of the universal Kae1/YgjD protein, is essential for mitochondrial genome maintenance

Jacques Oberto, Norman Breuil, Arnaud Hecker, Francesca Farina, Céline Brochier-Armanet, Emmanuel Culetto, Patrick Forterre

Nucleic Acids Res. 2009 Sep; 37(16): 5343–5352. Published online 2009 Jul 3. doi: 10.1093/nar/gkp557

PMCID:: PMC2760799

Abstract Article PDF–8.5M

Select item 27157079.

Conserved Network of Proteins Essential for Bacterial Viability

Jennifer I. Handford, Bérengère Ize, Grant Buchanan, Gareth P. Butland, Jack Greenblatt, Andrew Emili, Tracy Palmer

J Bacteriol. 2009 Aug; 191(15): 4732–4749. Published online 2009 Apr 17. doi: 10.1128/JB.00136-09

PMCID:: PMC2715707

Abstract Article PDF–2.6M

Select item 271570510.

Grasping at Shadows: Revealing the Elusive Nature of Essential Genes

Tarek Msadek

J Bacteriol. 2009 Aug; 191(15): 4701–4704. Published online 2009 May 22. doi: 10.1128/JB.00572-09

PMCID:: PMC2715705

Article PDF–420K

Select item 187459311.

Visualizing the proteome of Escherichia coli: an efficient and versatile method for labeling chromosomal coding DNA sequences (CDSs) with fluorescent protein genes

Rory M. Watt, Jing Wang, Meikid Leong, Hsiang-fu Kung, Kathryn S.E. Cheah, Depei Liu, Antoine Danchin, Jian-Dong Huang

Nucleic Acids Res. 2007 Mar; 35(6): e37. Published online 2007 Jan 31. doi: 10.1093/nar/gkl1158

PMCID:: PMC1874593

Abstract Article PDF–5.3M

Select item 168148212.

Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection

Tomoya Baba, Takeshi Ara, Miki Hasegawa, Yuki Takai, Yoshiko Okumura, Miki Baba, Kirill A Datsenko, Masaru Tomita, Barry L Wanner, Hirotada Mori

Mol Syst Biol. 2006; 2: 2006.0008. Published online 2006 Feb 21. doi: 10.1038/msb4100050

PMCID:: PMC1681482

Abstract Article PDF–400K

Select item 168148113.

Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110

Koji Hayashi, Naoki Morooka, Yoshihiro Yamamoto, Katsutoshi Fujita, Katsumi Isono, Sunju Choi, Eiichi Ohtsubo, Tomoya Baba, Barry L Wanner, Hirotada Mori, Takashi Horiuchi

Mol Syst Biol. 2006; 2: 2006.0007. Published online 2006 Feb 21. doi: 10.1038/msb4100049

PMCID:: PMC1681481

Abstract Article PDF–141K

Select item 134745214.

MEROPS: the peptidase database

Neil D. Rawlings, Fraser R. Morton, Alan J. Barrett

Nucleic Acids Res. 2006 Jan 1; 34(Database issue): D270–D272. Published online 2005 Dec 28. doi: 10.1093/nar/gkj089

PMCID:: PMC1347452

Abstract Article PDF–55K

Select item 132520015.

Escherichia coli K-12: a cooperatively developed annotation snapshot—2005

Monica Riley, Takashi Abe, Martha B. Arnaud, Mary K.B. Berlyn, Frederick R. Blattner, Roy R. Chaudhuri, Jeremy D. Glasner, Takashi Horiuchi, Ingrid M. Keseler, Takehide Kosuge, Hirotada Mori, Nicole T. Perna, Guy Plunkett, III, Kenneth E. Rudd, Margrethe H. Serres, Gavin H. Thomas, Nicholas R. Thomson, David Wishart, Barry L. Wanner

Nucleic Acids Res. 2006; 34(1): 1–9. Published online 2006 Jan 5. doi: 10.1093/nar/gkj405