PMC Links for GEO Profiles (Select 20679233) - PMC

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Items: 16

Select item 98413351.

Structure of a bacterial ribonucleoprotein complex central to the control of cell envelope biogenesis

Md Saiful Islam, Steven W Hardwick, Laura Quell, Svetlana Durica‐Mitic, Dimitri Y Chirgadze, Boris Görke, Ben F Luisi

EMBO J. 2023 Jan; 42(2): e112574. Published online 2022 Dec 12. doi: 10.15252/embj.2022112574

PMCID:: PMC9841335

Abstract Article PDF–4.6M

Select item 85467172.

A Spontaneous rapZ Mutant Impairs Infectivity of Lytic Bacteriophage vB_EcoM_JS09 against Enterotoxigenic Escherichia coli

Yan Zhou, Hongduo Bao, Hui Zhang, Maoda Pang, Shujiao Zhu, Ran Wang

mSphere. 2021 Mar-Apr; 6(2): e01286-20. Published online 2021 Mar 3. doi: 10.1128/mSphere.01286-20

PMCID:: PMC8546717

Abstract Article PDF–3.2M

Select item 70734683.

Small RNA‐binding protein RapZ mediates cell envelope precursor sensing and signaling in Escherichia coli

Muna A Khan, Svetlana Durica‐Mitic, Yvonne Göpel, Ralf Heermann, Boris Görke

EMBO J. 2020 Mar 16; 39(6): e103848. Published online 2020 Feb 17. doi: 10.15252/embj.2019103848

PMCID:: PMC7073468

Abstract Article PDF–2.2M

Select item 66024134.

Feedback regulation of small RNA processing by the cleavage product

Svetlana Durica-Mitic, Boris Görke

RNA Biol. 2019; 16(8): 1055–1065. Published online 2019 May 22. doi: 10.1080/15476286.2019.1612693

PMCID:: PMC6602413

Abstract Article PDF–3.7M

Select item 57373775.

Structural insights into RapZ-mediated regulation of bacterial amino-sugar metabolism

Grecia M. Gonzalez, Svetlana Durica-Mitic, Steven W. Hardwick, Martin C. Moncrieffe, Marcus Resch, Piotr Neumann, Ralf Ficner, Boris Görke, Ben F. Luisi

Nucleic Acids Res. 2017 Oct 13; 45(18): 10845–10860. Published online 2017 Sep 5. doi: 10.1093/nar/gkx732

PMCID:: PMC5737377

Abstract Article PDF–6.8M

Select item 47371446.

Domain swapping between homologous bacterial small RNAs dissects processing and Hfq binding determinants and uncovers an aptamer for conditional RNase E cleavage

Yvonne Göpel, Muna Ayesha Khan, Boris Görke

Nucleic Acids Res. 2016 Jan 29; 44(2): 824–837. Published online 2015 Nov 3. doi: 10.1093/nar/gkv1161

PMCID:: PMC4737144

Abstract Article PDF–17M

Select item 36054687.

Targeted decay of a regulatory small RNA by an adaptor protein for RNase E and counteraction by an anti-adaptor RNA

Yvonne Göpel, Kai Papenfort, Birte Reichenbach, Jörg Vogel, Boris Görke

Genes Dev. 2013 Mar 1; 27(5): 552–564. doi: 10.1101/gad.210112.112

PMCID:: PMC3605468

Abstract Article PDF–1.5M

Select item 35646088.

Crystallization and preliminary X-ray diffraction analysis of YhbJ from Escherichia coli, a key protein involved in the GlmYZ sRNA regulatory cascade

Marcus Resch, Yvonne Göpel, Boris Görke, Ralf Ficner

Acta Crystallogr Sect F Struct Biol Cryst Commun. 2013 Feb 1; 69(Pt 2): 109–114. Published online 2013 Jan 30. doi: 10.1107/S1744309112048622

PMCID:: PMC3564608

Abstract Article PDF–523K

Select item 26481909.

Characterization of YvcJ, a Conserved P-Loop-Containing Protein, and Its Implication in Competence in Bacillus subtilis

Jennifer Luciano, Elodie Foulquier, Jean-Raphael Fantino, Anne Galinier, Frédérique Pompeo

J Bacteriol. 2009 Mar; 191(5): 1556–1564. Published online 2008 Dec 12. doi: 10.1128/JB.01493-08

PMCID:: PMC2648190

Abstract Article PDF–570K

Select item 263458010.

Lysine Acetylation Is a Highly Abundant and Evolutionarily Conserved Modification in Escherichia Coli

Junmei Zhang, Robert Sprung, Jimin Pei, Xiaohong Tan, Sungchan Kim, Heng Zhu, Chuan-Fa Liu, Nick V. Grishin, Yingming Zhao

Mol Cell Proteomics. 2009 Feb; 8(2): 215–225. doi: 10.1074/mcp.M800187-MCP200

PMCID:: PMC2634580

Abstract Article PDF–262K

Select item 226781811.

Two Seemingly Homologous Noncoding RNAs Act Hierarchically to Activate glmS mRNA Translation

Johannes H Urban, Jörg Vogel

PLoS Biol. 2008 Mar; 6(3): e64. Published online 2008 Mar 18. doi: 10.1371/journal.pbio.0060064

PMCID:: PMC2267818

Abstract Article PDF–627K

Select item 168148112.

Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110

Koji Hayashi, Naoki Morooka, Yoshihiro Yamamoto, Katsutoshi Fujita, Katsumi Isono, Sunju Choi, Eiichi Ohtsubo, Tomoya Baba, Barry L Wanner, Hirotada Mori, Takashi Horiuchi

Mol Syst Biol. 2006; 2: 2006.0007. Published online 2006 Feb 21. doi: 10.1038/msb4100049

PMCID:: PMC1681481

Abstract Article PDF–141K

Select item 145705213.

Large-scale identification of protein–protein interaction of Escherichia coli K-12

Mohammad Arifuzzaman, Maki Maeda, Aya Itoh, Kensaku Nishikata, Chiharu Takita, Rintaro Saito, Takeshi Ara, Kenji Nakahigashi, Hsuan-Cheng Huang, Aki Hirai, Kohei Tsuzuki, Seira Nakamura, Mohammad Altaf-Ul-Amin, Taku Oshima, Tomoya Baba, Natsuko Yamamoto, Tomoyo Kawamura, Tomoko Ioka-Nakamichi, Masanari Kitagawa, Masaru Tomita, Shigehiko Kanaya, Chieko Wada, Hirotada Mori

Genome Res. 2006 May; 16(5): 686–691. doi: 10.1101/gr.4527806

PMCID:: PMC1457052

Abstract Article PDF–536K

Select item 132520014.

Escherichia coli K-12: a cooperatively developed annotation snapshot—2005

Monica Riley, Takashi Abe, Martha B. Arnaud, Mary K.B. Berlyn, Frederick R. Blattner, Roy R. Chaudhuri, Jeremy D. Glasner, Takashi Horiuchi, Ingrid M. Keseler, Takehide Kosuge, Hirotada Mori, Nicole T. Perna, Guy Plunkett, III, Kenneth E. Rudd, Margrethe H. Serres, Gavin H. Thomas, Nicholas R. Thomson, David Wishart, Barry L. Wanner

Nucleic Acids Res. 2006; 34(1): 1–9. Published online 2006 Jan 5. doi: 10.1093/nar/gkj405