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Items: 1 to 20 of 35

1.
Expanding the roles of chromatin insulators in nuclear architecture, chromatin organization and genome function
Todd Schoborg, Mariano Labrador
Cell Mol Life Sci. 2014 Nov; 71(21): 4089–4113. Published online 2014 Jul 11. doi: 10.1007/s00018-014-1672-6
PMCID:
PMC11113341
AbstractArticlePDF–887K
2.
Stress‐sensitive dynamics of miRNAs and Elba1 in Drosophila embryogenesis
Lovisa Örkenby, Signe Skog, Helen Ekman, Alessandro Gozzo, Unn Kugelberg, Rashmi Ramesh, Srivathsa Magadi, Gianluca Zambanini, Anna Nordin, Claudio Cantú, Daniel Nätt, Anita Öst
Mol Syst Biol. 2023 May; 19(5): e11148. Published online 2023 Mar 20. doi: 10.15252/msb.202211148
PMCID:
PMC10167479
AbstractArticlePDF–3.0M
3.
Spatial organization of transcribing loci during early genome activation in Drosophila
Shao-Kuei Huang, Peter H. Whitney, Sayantan Dutta, Stanislav Y. Shvartsman, Christine A. Rushlow
Curr Biol. Author manuscript; available in PMC 2022 Nov 22.
Published in final edited form as: Curr Biol. 2021 Nov 22; 31(22): 5102–5110.e5. Published online 2021 Oct 5. doi: 10.1016/j.cub.2021.09.027
PMCID:
PMC8612988
AbstractArticlePDF–1.6M
4.
The Functions and Mechanisms of Action of Insulators in the Genomes of Higher Eukaryotes
L. S. Melnikova, P. G. Georgiev, A. K. Golovnin
Acta Naturae. 2020 Oct-Dec; 12(4): 15–33. doi: 10.32607/actanaturae.11144
PMCID:
PMC7800606
AbstractArticlePDF–5.8M
5.
Insights into HP1a-Chromatin Interactions
Silvia Meyer-Nava, Victor E. Nieto-Caballero, Mario Zurita, Viviana Valadez-Graham
Cells. 2020 Aug; 9(8): 1866. Published online 2020 Aug 9. doi: 10.3390/cells9081866
PMCID:
PMC7465937
AbstractArticlePDF–2.2M
6.
CRISPR-based modular assembly of a UAS-cDNA/ORF plasmid library for more than 5500 Drosophila genes conserved in humans
Ping Wei, Wen Xue, Yun Zhao, Guang Ning, Jiwu Wang
Genome Res. 2020 Jan; 30(1): 95–106. doi: 10.1101/gr.250811.119
PMCID:
PMC6961578
AbstractArticlePDF–3.6M
7.
BEN-solo factors partition active chromatin to ensure proper gene activation in Drosophila
Malin Ueberschär, Huazhen Wang, Chun Zhang, Shu Kondo, Tsutomu Aoki, Paul Schedl, Eric C. Lai, Jiayu Wen, Qi Dai
Nat Commun. 2019; 10: 5700. Published online 2019 Dec 13. doi: 10.1038/s41467-019-13558-8
PMCID:
PMC6911014
AbstractArticlePDF–3.4M
8.
The BEN Domain Protein Insensitive Binds to the Fab-7 Chromatin Boundary To Establish Proper Segmental Identity in Drosophila
Anna Fedotova, Tsutomu Aoki, Mikaël Rossier, Rakesh Kumar Mishra, Chaevia Clendinen, Olga Kyrchanova, Daniel Wolle, Artem Bonchuk, Robert K. Maeda, Annick Mutero, Fabienne Cleard, Vladic Mogila, François Karch, Pavel Georgiev, Paul Schedl
Genetics. 2018 Oct; 210(2): 573–585. Published online 2018 Jun 8. doi: 10.1534/genetics.118.301259
PMCID:
PMC6216583
AbstractArticlePDF–2.0M
9.
Spatially varying cis-regulatory divergence in Drosophila embryos elucidates cis-regulatory logic
Peter A. Combs, Hunter B. Fraser
PLoS Genet. 2018 Nov; 14(11): e1007631. Published online 2018 Nov 1. doi: 10.1371/journal.pgen.1007631
PMCID:
PMC6211617
AbstractArticlePDF–2.1M
10.
Landscape and evolution of tissue-specific alternative polyadenylation across Drosophila species
Piero Sanfilippo, Jiayu Wen, Eric C. Lai
Genome Biol. 2017; 18: 229. Published online 2017 Nov 30. doi: 10.1186/s13059-017-1358-0
PMCID:
PMC5707805
AbstractArticlePDF–3.2M
11.
Genome-wide measurement of spatial expression in patterning mutants of Drosophila melanogaster
Peter A. Combs, Michael B. Eisen
Version 1. F1000Res. 2017; 6: 41. Published online 2017 Jan 12. doi: 10.12688/f1000research.9720.1
PMCID:
PMC5325077
AbstractArticlePDF–10M
12.
Different Evolutionary Strategies To Conserve Chromatin Boundary Function in the Bithorax Complex
Fabienne Cleard, Daniel Wolle, Andrew M. Taverner, Tsutomu Aoki, Girish Deshpande, Peter Andolfatto, Francois Karch, Paul Schedl
Genetics. 2017 Feb; 205(2): 589–603. Published online 2016 Dec 20. doi: 10.1534/genetics.116.195586
PMCID:
PMC5289839
AbstractArticlePDF–2.5M
13.
Transcriptomic data from panarthropods shed new light on the evolution of insulator binding proteins in insects: Insect insulator proteins
Thomas Pauli, Lucia Vedder, Daniel Dowling, Malte Petersen, Karen Meusemann, Alexander Donath, Ralph S. Peters, Lars Podsiadlowski, Christoph Mayer, Shanlin Liu, Xin Zhou, Peter Heger, Thomas Wiehe, Lars Hering, Georg Mayer, Bernhard Misof, Oliver Niehuis
BMC Genomics. 2016; 17: 861. Published online 2016 Nov 3. doi: 10.1186/s12864-016-3205-1
PMCID:
PMC5094011
AbstractArticlePDF–1.0M
14.
mRNA-Associated Processes and Their Influence on Exon-Intron Structure in Drosophila melanogaster
Gildas Lepennetier, Francesco Catania
G3 (Bethesda) 2016 Jun; 6(6): 1617–1626. Published online 2016 Mar 28. doi: 10.1534/g3.116.029231
PMCID:
PMC4889658
AbstractArticlePDF–1.5M
15.
Functional Requirements for Fab-7 Boundary Activity in the Bithorax Complex
Daniel Wolle, Fabienne Cleard, Tsutomu Aoki, Girish Deshpande, Paul Schedl, Francois Karch
Mol Cell Biol. 2015 Nov; 35(21): 3739–3752. Prepublished online 2015 Aug 24. Published online 2015 Sep 30. doi: 10.1128/MCB.00456-15
PMCID:
PMC4589599
AbstractArticlePDF–2.2M
16.
Gene Model Annotations for Drosophila melanogaster: The Rule-Benders
Madeline A. Crosby, L. Sian Gramates, Gilberto dos Santos, Beverley B. Matthews, Susan E. St. Pierre, Pinglei Zhou, Andrew J. Schroeder, Kathleen Falls, David B. Emmert, Susan M. Russo, William M. Gelbart, the FlyBase Consortium
G3 (Bethesda) 2015 Aug; 5(8): 1737–1749. Published online 2015 Jun 24. doi: 10.1534/g3.115.018937
PMCID:
PMC4528330
AbstractArticlePDF–2.2M
17.
Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data
Beverley B. Matthews, Gilberto dos Santos, Madeline A. Crosby, David B. Emmert, Susan E. St. Pierre, L. Sian Gramates, Pinglei Zhou, Andrew J. Schroeder, Kathleen Falls, Victor Strelets, Susan M. Russo, William M. Gelbart, the FlyBase Consortium
G3 (Bethesda) 2015 Aug; 5(8): 1721–1736. Published online 2015 Jun 24. doi: 10.1534/g3.115.018929
PMCID:
PMC4528329
AbstractArticlePDF–4.9M
18.
The Release 6 reference sequence of the Drosophila melanogaster genome
Roger A. Hoskins, Joseph W. Carlson, Kenneth H. Wan, Soo Park, Ivonne Mendez, Samuel E. Galle, Benjamin W. Booth, Barret D. Pfeiffer, Reed A. George, Robert Svirskas, Martin Krzywinski, Jacqueline Schein, Maria Carmela Accardo, Elisabetta Damia, Giovanni Messina, María Méndez-Lago, Beatriz de Pablos, Olga V. Demakova, Evgeniya N. Andreyeva, Lidiya V. Boldyreva, Marco Marra, A. Bernardo Carvalho, Patrizio Dimitri, Alfredo Villasante, Igor F. Zhimulev, Gerald M. Rubin, Gary H. Karpen, Susan E. Celniker
Genome Res. 2015 Mar; 25(3): 445–458. doi: 10.1101/gr.185579.114
PMCID:
PMC4352887
AbstractArticlePDF–1022K
19.
Common and distinct DNA-binding and regulatory activities of the BEN-solo transcription factor family
Qi Dai, Aiming Ren, Jakub O. Westholm, Hong Duan, Dinshaw J. Patel, Eric C. Lai
Genes Dev. 2015 Jan 1; 29(1): 48–62. doi: 10.1101/gad.252122.114
PMCID:
PMC4281564
AbstractArticlePDF–1.8M
20.
Phylostratigraphic Bias Creates Spurious Patterns of Genome Evolution
Bryan A. Moyers, Jianzhi Zhang
Mol Biol Evol. 2015 Jan 1; 32(1): 258–267. Published online 2014 Oct 13. doi: 10.1093/molbev/msu286
Correction in:
Mol Biol Evol. 2016 Nov; 33(11): 3031.
PMCID:
PMC4271527
AbstractArticlePDF–618K

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