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Select item 41238551.

The binary protein-protein interaction landscape of Escherichia coli

Seesandra V. Rajagopala, Patricia Sikorski, Ashwani Kumar, Roberto Mosca, James Vlasblom, Roland Arnold, Jonathan Franca-Koh, Suman B. Pakala, Sadhna Phanse, Arnaud Ceol, Roman Häuser, Gabriella Siszler, Stefan Wuchty, Andrew Emili, Mohan Babu, Patrick Aloy, Rembert Pieper, Peter Uetz

Nat Biotechnol. Author manuscript; available in PMC 2014 Sep 1.

Published in final edited form as: Nat Biotechnol. 2014 Mar; 32(3): 285–290. Published online 2014 Feb 23. doi: 10.1038/nbt.2831

PMCID:: PMC4123855

Article PDF–1.1M

Select item 40734882.

Mutations in Transcriptional Regulators Allow Selective Engineering of Signal Integration Logic

Szabolcs Semsey

mBio. 2014 May-Jun; 5(3): e01171-14. Published online 2014 Jun 24. doi: 10.1128/mBio.01171-14

PMCID:: PMC4073488

Article PDF–3.6M

Select item 33964753.

Galactose repressor mediated intersegmental chromosomal connections in Escherichia coli

Zhong Qian, Emilios K. Dimitriadis, Rotem Edgar, Prahathees Eswaramoorthy, Sankar Adhya

Proc Natl Acad Sci U S A. 2012 Jul 10; 109(28): 11336–11341. Published online 2012 Jun 25. doi: 10.1073/pnas.1208595109

PMCID:: PMC3396475

Article PDF–1.0M

Select item 28296354.

Regulatory Activity Revealed by Dynamic Correlations in Gene Expression Noise

Mary J. Dunlop, Robert Sidney Cox, III, Joseph H. Levine, Richard M. Murray, Michael B. Elowitz

Nat Genet. Author manuscript; available in PMC 2010 Feb 28.

Published in final edited form as: Nat Genet. 2008 Dec; 40(12): 1493–1498. doi: 10.1038/ng.281

PMCID:: PMC2829635

Article PDF–1.9M

Select item 27798595.

Relation of intracellular signal levels and promoter activities in the gal regulon of Escherichia coli

Sandeep Krishna, László Orosz, Kim Sneppen, Sankar Adhya, Szabolcs Semsey

J Mol Biol. Author manuscript; available in PMC 2010 Aug 28.

Published in final edited form as: J Mol Biol. 2009 Aug 28; 391(4): 671–678. Published online 2009 Jun 23. doi: 10.1016/j.jmb.2009.06.043

PMCID:: PMC2779859

Article PDF–3.2M

Select item 26888246.

Allostery in the LacI/GalR Family: Variations on a Theme

Liskin Swint-Kruse, Kathleen S. Matthews

Curr Opin Microbiol. Author manuscript; available in PMC 2010 Apr 1.

Published in final edited form as: Curr Opin Microbiol. 2009 Apr; 12(2): 129–137. Published online 2009 Mar 5. doi: 10.1016/j.mib.2009.01.009

PMCID:: PMC2688824

Article PDF–1.7M

Select item 25932407.

Induction of the Galactose Enzymes in Escherichia coli Is Independent of the C-1-Hydroxyl Optical Configuration of the Inducer d-Galactose

Sang Jun Lee, Dale E. A. Lewis, Sankar Adhya

J Bacteriol. 2008 Dec; 190(24): 7932–7938. Published online 2008 Oct 17. doi: 10.1128/JB.01008-08

PMCID:: PMC2593240

Article PDF–727K

Select item 16814818.

Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110

Koji Hayashi, Naoki Morooka, Yoshihiro Yamamoto, Katsutoshi Fujita, Katsumi Isono, Sunju Choi, Eiichi Ohtsubo, Tomoya Baba, Barry L Wanner, Hirotada Mori, Takashi Horiuchi

Mol Syst Biol. 2006; 2: 2006.0007. Published online 2006 Feb 21. doi: 10.1038/msb4100049

PMCID:: PMC1681481

Article PDF–141K

Select item 14570529.

Large-scale identification of protein–protein interaction of Escherichia coli K-12

Mohammad Arifuzzaman, Maki Maeda, Aya Itoh, Kensaku Nishikata, Chiharu Takita, Rintaro Saito, Takeshi Ara, Kenji Nakahigashi, Hsuan-Cheng Huang, Aki Hirai, Kohei Tsuzuki, Seira Nakamura, Mohammad Altaf-Ul-Amin, Taku Oshima, Tomoya Baba, Natsuko Yamamoto, Tomoyo Kawamura, Tomoko Ioka-Nakamichi, Masanari Kitagawa, Masaru Tomita, Shigehiko Kanaya, Chieko Wada, Hirotada Mori

Genome Res. 2006 May; 16(5): 686–691. doi: 10.1101/gr.4527806

PMCID:: PMC1457052

Article PDF–536K

Select item 132520010.

Escherichia coli K-12: a cooperatively developed annotation snapshot—2005

Monica Riley, Takashi Abe, Martha B. Arnaud, Mary K.B. Berlyn, Frederick R. Blattner, Roy R. Chaudhuri, Jeremy D. Glasner, Takashi Horiuchi, Ingrid M. Keseler, Takehide Kosuge, Hirotada Mori, Nicole T. Perna, Guy Plunkett, III, Kenneth E. Rudd, Margrethe H. Serres, Gavin H. Thomas, Nicholas R. Thomson, David Wishart, Barry L. Wanner

Nucleic Acids Res. 2006; 34(1): 1–9. Published online 2006 Jan 5. doi: 10.1093/nar/gkj405