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Select item 91780051.

Structural basis of transcription activation by Rob, a pleiotropic AraC/XylS family regulator

Jing Shi, Fulin Wang, Fangfang Li, Lu Wang, Ying Xiong, Aijia Wen, Yuanling Jin, Sha Jin, Fei Gao, Zhenzhen Feng, Jiacong Li, Yu Zhang, Zhuo Shang, Shuang Wang, Yu Feng, Wei Lin

Nucleic Acids Res. 2022 Jun 10; 50(10): 5974–5987. Published online 2022 May 31. doi: 10.1093/nar/gkac433

PMCID:: PMC9178005

Abstract Article PDF–7.2M

Select item 82795592.

The N-terminal Helix-Turn-Helix Motif of Transcription Factors MarA and Rob Drives DNA Recognition

Marina Corbella, Qinghua Liao, Cátia Moreira, Antonietta Parracino, Peter M. Kasson, Shina Caroline Lynn Kamerlin

J Phys Chem B. 2021 Jul 1; 125(25): 6791–6806. Published online 2021 Jun 17. doi: 10.1021/acs.jpcb.1c00771

PMCID:: PMC8279559

Abstract Article PDF–6.6M

Select item 73018833.

Effects of Nucleobase Amino Acids on the Binding of Rob to Its Promoter DNA: Differential Alteration of DNA Affinity and Phenotype

Chao Zhang, Shengxi Chen, Larisa M. Dedkova, Sidney M. Hecht

Biochemistry. Author manuscript; available in PMC 2020 Jun 18.

Published in final edited form as: Biochemistry. 2020 Jun 9; 59(22): 2111–2119. Published online 2020 May 26. doi: 10.1021/acs.biochem.0c00290

PMCID:: PMC7301883

Abstract Article PDF–1.4M

Select item 71757984.

Alteration of Transcriptional Regulator Rob In Vivo: Enhancement of Promoter DNA Binding and Antibiotic Resistance in the Presence of Nucleobase Amino Acids

Chao Zhang, Shengxi Chen, Xiaoguang Bai, Larisa M. Dedkova, Sidney M. Hecht

Biochemistry. Author manuscript; available in PMC 2021 Mar 31.

Published in final edited form as: Biochemistry. 2020 Mar 31; 59(12): 1217–1220. Published online 2020 Mar 17. doi: 10.1021/acs.biochem.0c00103

PMCID:: PMC7175798

Abstract Article PDF–560K

Select item 36408455.

Transcription Activation by Escherichia coli Rob at Class II Promoters: Protein–Protein Interactions between Rob’s N-Terminal Domain and the σ⁷⁰ Subunit of RNA Polymerase

Lanyn P. Taliaferro, Edward F. Keen, III, Neus Sanchez-Alberola, Richard E. Wolf, Jr

J Mol Biol. Author manuscript; available in PMC 2013 Jun 8.

Published in final edited form as: J Mol Biol. 2012 Jun 8; 419(0): 139–157. Published online 2012 Mar 28. doi: 10.1016/j.jmb.2012.03.019

PMCID:: PMC3640845

Abstract Article PDF–1.8M

Select item 28900906.

Different effects of transcriptional regulators MarA, SoxS and Rob on susceptibility of Escherichia coli to cationic antimicrobial peptides (CAMPs): Rob-dependent CAMP induction of the marRAB operon

Douglas M. Warner, Stuart B. Levy

Microbiology (Reading) 2010 Feb; 156(Pt 2): 570–578. doi: 10.1099/mic.0.033415-0

PMCID:: PMC2890090

Abstract Article PDF–169K

Select item 27456377.

Solution Structure of the DNA Binding Domain of AraC Protein

Michael E. Rodgers, Robert Schleif

Proteins. Author manuscript; available in PMC 2010 Oct 1.

Published in final edited form as: Proteins. 2009 Oct; 77(1): 202–208. doi: 10.1002/prot.22431

PMCID:: PMC2745637

Abstract Article PDF–1.0M

Select item 27280428.

Two functions of the C-terminal domain of Escherichia coli Rob: mediating “sequestration-dispersal” as a novel off-on switch for regulating Rob’s activity as a transcription activator and preventing degradation of Rob by Lon protease

Kevin L. Griffith, M. Megan Fitzpatrick, Edward F. Keen, III, Richard E. Wolf, Jr.

J Mol Biol. Author manuscript; available in PMC 2010 May 8.

Published in final edited form as: J Mol Biol. 2009 May 8; 388(3): 415–430. Published online 2009 Mar 14. doi: 10.1016/j.jmb.2009.03.023

PMCID:: PMC2728042

Abstract Article PDF–1000K

Select item 27256009.

An Excretory Function for the Escherichia coli Outer Membrane Pore TolC: Upregulation of marA and soxS Transcription and Rob Activity Due to Metabolites Accumulated in tolC Mutants

Judah L. Rosner, Robert G. Martin

J Bacteriol. 2009 Aug; 191(16): 5283–5292. Published online 2009 Jun 5. doi: 10.1128/JB.00507-09

PMCID:: PMC2725600

Abstract Article PDF–470K

Select item 261491210.

Activation of the E. coli marA/soxS/rob regulon in response to transcriptional activator concentration

Robert G. Martin, Emily S. Bartlett, Judah L. Rosner, Michael E. Wall

J Mol Biol. Author manuscript; available in PMC 2009 Jan 7.

Published in final edited form as: J Mol Biol. 2008 Jul 4; 380(2): 278–284. Published online 2008 May 13. doi: 10.1016/j.jmb.2008.05.015

PMCID:: PMC2614912

Abstract Article PDF–293K

Select item 257495611.

Transcriptional activation by MarA, SoxS and Rob of two tolC promoters using one binding site: a complex promoter configuration for tolC in Escherichia coli

Aixia Zhang, Judah L. Rosner, Robert G. Martin

Mol Microbiol. Author manuscript; available in PMC 2009 Sep 1.

Published in final edited form as: Mol Microbiol. 2008 Sep; 69(6): 1450–1455. Published online 2008 Jul 31. doi: 10.1111/j.1365-2958.2008.06371.x

PMCID:: PMC2574956

Abstract Article PDF–495K

Select item 229217712.

Protein abundance profiling of the Escherichia coli cytosol

Yasushi Ishihama, Thorsten Schmidt, Juri Rappsilber, Matthias Mann, F Ulrich Hartl, Michael J Kerner, Dmitrij Frishman

BMC Genomics. 2008; 9: 102. Published online 2008 Feb 27. doi: 10.1186/1471-2164-9-102

PMCID:: PMC2292177

Abstract Article PDF–1.0M

Select item 183852313.

Antibiotic Stress, Genetic Response and Altered Permeability of E. coli

Miguel Viveiros, Myrielle Dupont, Liliana Rodrigues, Isabel Couto, Anne Davin-Regli, Marta Martins, Jean-Marie Pagès, Leonard Amaral

PLoS One. 2007; 2(4): e365. Published online 2007 Apr 11. doi: 10.1371/journal.pone.0000365

PMCID:: PMC1838523

Abstract Article PDF–290K

Select item 168148114.

Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110

Koji Hayashi, Naoki Morooka, Yoshihiro Yamamoto, Katsutoshi Fujita, Katsumi Isono, Sunju Choi, Eiichi Ohtsubo, Tomoya Baba, Barry L Wanner, Hirotada Mori, Takashi Horiuchi

Mol Syst Biol. 2006; 2: 2006.0007. Published online 2006 Feb 21. doi: 10.1038/msb4100049

PMCID:: PMC1681481

Abstract Article PDF–141K

Select item 132520015.

Escherichia coli K-12: a cooperatively developed annotation snapshot—2005

Monica Riley, Takashi Abe, Martha B. Arnaud, Mary K.B. Berlyn, Frederick R. Blattner, Roy R. Chaudhuri, Jeremy D. Glasner, Takashi Horiuchi, Ingrid M. Keseler, Takehide Kosuge, Hirotada Mori, Nicole T. Perna, Guy Plunkett, III, Kenneth E. Rudd, Margrethe H. Serres, Gavin H. Thomas, Nicholas R. Thomson, David Wishart, Barry L. Wanner

Nucleic Acids Res. 2006; 34(1): 1–9. Published online 2006 Jan 5. doi: 10.1093/nar/gkj405