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Select item 41238551.

The binary protein-protein interaction landscape of Escherichia coli

Seesandra V. Rajagopala, Patricia Sikorski, Ashwani Kumar, Roberto Mosca, James Vlasblom, Roland Arnold, Jonathan Franca-Koh, Suman B. Pakala, Sadhna Phanse, Arnaud Ceol, Roman Häuser, Gabriella Siszler, Stefan Wuchty, Andrew Emili, Mohan Babu, Patrick Aloy, Rembert Pieper, Peter Uetz

Nat Biotechnol. Author manuscript; available in PMC 2014 Sep 1.

Published in final edited form as: Nat Biotechnol. 2014 Mar; 32(3): 285–290. Published online 2014 Feb 23. doi: 10.1038/nbt.2831

PMCID:: PMC4123855

Abstract Article PDF–1.1M

Select item 38316362.

TusA (YhhP) and IscS are required for molybdenum cofactor-dependent base-analog detoxification

Stanislav G Kozmin, Elena I Stepchenkova, Roel M Schaaper

Microbiologyopen. 2013 Oct; 2(5): 743–755. Published online 2013 Jul 29. doi: 10.1002/mbo3.108

PMCID:: PMC3831636

Abstract Article PDF–650K

Select item 32816013.

A Sulfurtransferase Is Essential for Activity of Formate Dehydrogenases in Escherichia coli

Rémi Thomé, Alexander Gust, René Toci, Ralf Mendel, Florian Bittner, Axel Magalon, Anne Walburger

J Biol Chem. 2012 Feb 10; 287(7): 4671–4678. Published online 2011 Dec 22. doi: 10.1074/jbc.M111.327122

PMCID:: PMC3281601

Abstract Article PDF–527K

Select item 28541274.

Structural Basis for Fe–S Cluster Assembly and tRNA Thiolation Mediated by IscS Protein–Protein Interactions

Rong Shi, Ariane Proteau, Magda Villarroya, Ismaïl Moukadiri, Linhua Zhang, Jean-François Trempe, Allan Matte, M. Eugenia Armengod, Miroslaw Cygler

PLoS Biol. 2010 Apr; 8(4): e1000354. Published online 2010 Apr 13. doi: 10.1371/journal.pbio.1000354

PMCID:: PMC2854127

Abstract Article PDF–2.2M

Select item 28212675.

Crystal structure of YnjE from Escherichia coli, a sulfurtransferase with three rhodanese domains

Petra Hänzelmann, Jan U Dahl, Jochen Kuper, Alexander Urban, Ursula Müller-Theissen, Silke Leimkühler, Hermann Schindelin

Protein Sci. 2009 Dec; 18(12): 2480–2491. Published online 2009 Oct 1. doi: 10.1002/pro.260

PMCID:: PMC2821267

Abstract Article PDF–621K

Select item 28072876.

IscS Functions as a Primary Sulfur-donating Enzyme by Interacting Specifically with MoeB and MoaD in the Biosynthesis of Molybdopterin in Escherichia coli

Wanjiao Zhang, Alexander Urban, Hisaaki Mihara, Silke Leimkühler, Tatsuo Kurihara, Nobuyoshi Esaki

J Biol Chem. 2010 Jan 22; 285(4): 2302–2308. Published online 2009 Nov 29. doi: 10.1074/jbc.M109.082172

PMCID:: PMC2807287

Abstract Article PDF–1.2M

Select item 27256057.

Hydroxyl Radicals Are Involved in Cell Killing by the Bacterial Topoisomerase I Cleavage Complex

I-Fen Liu, Thirunavukkarasu Annamalai, Jeanette H. Sutherland, Yuk-Ching Tse-Dinh

J Bacteriol. 2009 Aug; 191(16): 5315–5319. Published online 2009 Jun 12. doi: 10.1128/JB.00559-09

PMCID:: PMC2725605

Abstract Article PDF–711K

Select item 26931518.

Small RNA-induced differential degradation of the polycistronic mRNA iscRSUA

Guillaume Desnoyers, Audrey Morissette, Karine Prévost, Eric Massé

EMBO J. 2009 Jun 3; 28(11): 1551–1561. Published online 2009 Apr 30. doi: 10.1038/emboj.2009.116

PMCID:: PMC2693151

Abstract Article PDF–1.0M

Select item 22921779.

Protein abundance profiling of the Escherichia coli cytosol

Yasushi Ishihama, Thorsten Schmidt, Juri Rappsilber, Matthias Mann, F Ulrich Hartl, Michael J Kerner, Dmitrij Frishman

BMC Genomics. 2008; 9: 102. Published online 2008 Feb 27. doi: 10.1186/1471-2164-9-102

PMCID:: PMC2292177

Abstract Article PDF–1.0M

Select item 179730910.

Genome-Wide Screening of Genes Required for Swarming Motility in Escherichia coli K-12

Tetsuyoshi Inoue, Ryuji Shingaki, Shotaro Hirose, Kaori Waki, Hirotada Mori, Kazuhiro Fukui

J Bacteriol. 2007 Feb; 189(3): 950–957. Published online 2006 Nov 22. doi: 10.1128/JB.01294-06

PMCID:: PMC1797309

Abstract Article PDF–141K

Select item 169820911.

Experimental and Computational Assessment of Conditionally Essential Genes in Escherichia coli

Andrew R. Joyce, Jennifer L. Reed, Aprilfawn White, Robert Edwards, Andrei Osterman, Tomoya Baba, Hirotada Mori, Scott A. Lesely, Bernhard Ø. Palsson, Sanjay Agarwalla

J Bacteriol. 2006 Dec; 188(23): 8259–8271. Published online 2006 Sep 29. doi: 10.1128/JB.00740-06

PMCID:: PMC1698209

Abstract Article PDF–779K

Select item 168148112.

Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110

Koji Hayashi, Naoki Morooka, Yoshihiro Yamamoto, Katsutoshi Fujita, Katsumi Isono, Sunju Choi, Eiichi Ohtsubo, Tomoya Baba, Barry L Wanner, Hirotada Mori, Takashi Horiuchi

Mol Syst Biol. 2006; 2: 2006.0007. Published online 2006 Feb 21. doi: 10.1038/msb4100049

PMCID:: PMC1681481

Abstract Article PDF–141K

Select item 145705213.

Large-scale identification of protein–protein interaction of Escherichia coli K-12

Mohammad Arifuzzaman, Maki Maeda, Aya Itoh, Kensaku Nishikata, Chiharu Takita, Rintaro Saito, Takeshi Ara, Kenji Nakahigashi, Hsuan-Cheng Huang, Aki Hirai, Kohei Tsuzuki, Seira Nakamura, Mohammad Altaf-Ul-Amin, Taku Oshima, Tomoya Baba, Natsuko Yamamoto, Tomoyo Kawamura, Tomoko Ioka-Nakamichi, Masanari Kitagawa, Masaru Tomita, Shigehiko Kanaya, Chieko Wada, Hirotada Mori

Genome Res. 2006 May; 16(5): 686–691. doi: 10.1101/gr.4527806

PMCID:: PMC1457052

Abstract Article PDF–536K

Select item 136021914.

Role of conserved cysteines in mediating sulfur transfer from IscS to IscU

Archer D. Smith, Jeverson Frazzon, Dennis R. Dean, Michael K. Johnson

FEBS Lett. Author manuscript; available in PMC 2006 Feb 2.

Published in final edited form as: FEBS Lett. 2005 Sep 26; 579(23): 5236–5240. doi: 10.1016/j.febslet.2005.08.046

PMCID:: PMC1360219

Abstract Article PDF–203K

Select item 132520015.

Escherichia coli K-12: a cooperatively developed annotation snapshot—2005

Monica Riley, Takashi Abe, Martha B. Arnaud, Mary K.B. Berlyn, Frederick R. Blattner, Roy R. Chaudhuri, Jeremy D. Glasner, Takashi Horiuchi, Ingrid M. Keseler, Takehide Kosuge, Hirotada Mori, Nicole T. Perna, Guy Plunkett, III, Kenneth E. Rudd, Margrethe H. Serres, Gavin H. Thomas, Nicholas R. Thomson, David Wishart, Barry L. Wanner

Nucleic Acids Res. 2006; 34(1): 1–9. Published online 2006 Jan 5. doi: 10.1093/nar/gkj405