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Items: 1 to 20 of 66

1.
Species-Specific Transcription Factors Associated with Long Terminal Repeat Promoters of Endogenous Retroviruses: A Comprehensive Review
Md Jakir Hossain, Perpetual Nyame, Kazuaki Monde
Biomolecules. 2024 Mar; 14(3): 280. Published online 2024 Feb 26. doi: 10.3390/biom14030280
PMCID:
PMC10968565
AbstractArticlePDF–1018K
2.
The N-Terminal Part of Drosophila CP190 Is a Platform for Interaction with Multiple Architectural Proteins
Anton Golovnin, Larisa Melnikova, Valentin Babosha, Galina V. Pokholkova, Ivan Slovohotov, Anastasia Umnova, Oksana Maksimenko, Igor F. Zhimulev, Pavel Georgiev
Int J Mol Sci. 2023 Nov; 24(21): 15917. Published online 2023 Nov 2. doi: 10.3390/ijms242115917
PMCID:
PMC10648081
AbstractArticlePDF–5.5M
3.
M1BP is an essential transcriptional activator of oxidative metabolism during Drosophila development
Gabriela Poliacikova, Marine Barthez, Thomas Rival, Aïcha Aouane, Nuno Miguel Luis, Fabrice Richard, Fabrice Daian, Nicolas Brouilly, Frank Schnorrer, Corinne Maurel-Zaffran, Yacine Graba, Andrew J. Saurin
Nat Commun. 2023; 14: 3187. Published online 2023 Jun 2. doi: 10.1038/s41467-023-38986-5
PMCID:
PMC10238438
AbstractArticlePDF–14M
4.
Next-generation large-scale binary protein interaction network for Drosophila melanogaster
Hong-Wen Tang, Kerstin Spirohn, Yanhui Hu, Tong Hao, István A. Kovács, Yue Gao, Richard Binari, Donghui Yang-Zhou, Kenneth H. Wan, Joel S. Bader, Dawit Balcha, Wenting Bian, Benjamin W. Booth, Atina G. Coté, Steffi de Rouck, Alice Desbuleux, Kah Yong Goh, Dae-Kyum Kim, Jennifer J. Knapp, Wen Xing Lee, Irma Lemmens, Cathleen Li, Mian Li, Roujia Li, Hyobin Julianne Lim, Yifang Liu, Katja Luck, Dylan Markey, Carl Pollis, Sudharshan Rangarajan, Jonathan Rodiger, Sadie Schlabach, Yun Shen, Dayag Sheykhkarimli, Bridget TeeKing, Frederick P. Roth, Jan Tavernier, Michael A. Calderwood, David E. Hill, Susan E. Celniker, Marc Vidal, Norbert Perrimon, Stephanie E. Mohr
Nat Commun. 2023; 14: 2162. Published online 2023 Apr 15. doi: 10.1038/s41467-023-37876-0
PMCID:
PMC10105736
AbstractArticlePDF–3.2M
5.
Twenty-seven ZAD-ZNF genes of Drosophila melanogaster are orthologous to the embryo polarity determining mosquito gene cucoid
Muzi Li, Koray Kasan, Zinnia Saha, Yoseop Yoon, Urs Schmidt-Ott
PLoS One. 2023; 18(1): e0274716. Published online 2023 Jan 3. doi: 10.1371/journal.pone.0274716
PMCID:
PMC9810180
AbstractArticlePDF–2.7M
6.
Mechanisms of enhancer-promoter communication and chromosomal architecture in mammals and Drosophila
Olga V. Kyrchanova, Oleg V. Bylino, Pavel G. Georgiev
Front Genet. 2022; 13: 1081088. Published online 2022 Dec 1. doi: 10.3389/fgene.2022.1081088
PMCID:
PMC9751008
AbstractArticlePDF–975K
7.
The Drosophila BEAF insulator protein interacts with the polybromo subunit of the PBAP chromatin remodeling complex
J Keller McKowen, Satya V S P Avva, Mukesh Maharjan, Fabiana M Duarte, Jacob M Tome, Julius Judd, Jamie L Wood, Sunday Negedu, Yunkai Dong, John T Lis, Craig M Hart
G3 (Bethesda) 2022 Nov; 12(11): jkac223. Published online 2022 Aug 27. doi: 10.1093/g3journal/jkac223
PMCID:
PMC9635645
AbstractArticlePDF–1.8M
8.
Ribbon boosts ribosomal protein gene expression to coordinate organ form and function
Rajprasad Loganathan, Daniel C. Levings, Ji Hoon Kim, Michael B. Wells, Hannah Chiu, Yifan Wu, Matthew Slattery, Deborah J. Andrew
J Cell Biol. 2022 Apr 4; 221(4): e202110073. Published online 2022 Feb 23. doi: 10.1083/jcb.202110073
PMCID:
PMC9237840
AbstractArticlePDF–12M
9.
Essential role of Cp190 in physical and regulatory boundary formation
Anjali Kaushal, Julien Dorier, Bihan Wang, Giriram Mohana, Michael Taschner, Pascal Cousin, Patrice Waridel, Christian Iseli, Anastasiia Semenova, Simon Restrepo, Nicolas Guex, Erez Lieberman Aiden, Maria Cristina Gambetta
Sci Adv. 2022 May; 8(19): eabl8834. Published online 2022 May 13. doi: 10.1126/sciadv.abl8834
PMCID:
PMC9106302
AbstractArticlePDF–8.3M
10.
M1BP cooperates with CP190 to activate transcription at TAD borders and promote chromatin insulator activity
Indira Bag, Shue Chen, Leah F. Rosin, Yang Chen, Chen-Yu Liu, Guo-Yun Yu, Elissa P. Lei
Nat Commun. 2021; 12: 4170. Published online 2021 Jul 7. doi: 10.1038/s41467-021-24407-y
PMCID:
PMC8263732
AbstractArticlePDF–4.8M
11.
Multi-Scale Organization of the Drosophila melanogaster Genome
Samantha C. Peterson, Kaylah B. Samuelson, Stacey L. Hanlon
Genes (Basel) 2021 Jun; 12(6): 817. Published online 2021 May 27. doi: 10.3390/genes12060817
PMCID:
PMC8228293
AbstractArticlePDF–1.0M
12.
CTCF As an Example of DNA-Binding Transcription Factors Containing Clusters of C2H2-Type Zinc Fingers
O. G. Maksimenko, D. V. Fursenko, E. V. Belova, P. G. Georgiev
Acta Naturae. 2021 Jan-Mar; 13(1): 31–46. doi: 10.32607/actanaturae.11206
PMCID:
PMC8084297
AbstractArticlePDF–773K
13.
An RNA-interference screen in Drosophila to identify ZAD-containing C2H2 zinc finger genes that function in female germ cells
Laura Shapiro-Kulnane, Oscar Bautista, Helen K Salz
G3 (Bethesda) 2021 Jan; 11(1): jkaa016. Published online 2020 Dec 7. doi: 10.1093/g3journal/jkaa016
PMCID:
PMC8022714
AbstractArticlePDF–578K
14.
Structural basis of diversity and homodimerization specificity of zinc-finger-associated domains in Drosophila
Artem Bonchuk, Konstantin Boyko, Anna Fedotova, Alena Nikolaeva, Sofya Lushchekina, Anastasia Khrustaleva, Vladimir Popov, Pavel Georgiev
Nucleic Acids Res. 2021 Feb 26; 49(4): 2375–2389. Published online 2021 Feb 8. doi: 10.1093/nar/gkab061
PMCID:
PMC7913770
AbstractArticlePDF–4.0M
15.
Innovation of heterochromatin functions drives rapid evolution of essential ZAD-ZNF genes in Drosophila
Bhavatharini Kasinathan, Serafin U Colmenares, III, Hannah McConnell, Janet M Young, Gary H Karpen, Harmit S Malik
eLife. 2020; 9: e63368. Published online 2020 Nov 10. doi: 10.7554/eLife.63368
PMCID:
PMC7655104
AbstractArticlePDF–1.7M
16.
Motif 1 Binding Protein suppresses wingless to promote eye fate in Drosophila
Akanksha Raj, Anuradha Venkatakrishnan Chimata, Amit Singh
Sci Rep. 2020; 10: 17221. Published online 2020 Oct 14. doi: 10.1038/s41598-020-73891-7
PMCID:
PMC7560846
AbstractArticlePDF–4.8M
17.
Predictive features of gene expression variation reveal mechanistic link with differential expression
Olga M Sigalova, Amirreza Shaeiri, Mattia Forneris, Eileen EM Furlong, Judith B Zaugg
Mol Syst Biol. 2020 Aug; 16(8): e9539. Published online 2020 Aug 7. doi: 10.15252/msb.20209539
PMCID:
PMC7411568
AbstractArticlePDF–7.7M
18.
Human ZKSCAN3 and Drosophila M1BP are functionally homologous transcription factors in autophagy regulation
Marine Barthez, Mathilde Poplineau, Marwa Elrefaey, Nathalie Caruso, Yacine Graba, Andrew J. Saurin
Sci Rep. 2020; 10: 9653. Published online 2020 Jun 15. doi: 10.1038/s41598-020-66377-z
PMCID:
PMC7296029
AbstractArticlePDF–5.8M
19.
The conserved regulatory basis of mRNA contributions to the early Drosophila embryo differs between the maternal and zygotic genomes
Charles S. Omura, Susan E. Lott
PLoS Genet. 2020 Mar; 16(3): e1008645. Published online 2020 Mar 30. doi: 10.1371/journal.pgen.1008645
PMCID:
PMC7145188
AbstractArticlePDF–3.2M
20.
Multi-level and lineage-specific interactomes of the Hox transcription factor Ubx contribute to its functional specificity
Julie Carnesecchi, Gianluca Sigismondo, Katrin Domsch, Clara Eva Paula Baader, Mahmoud-Reza Rafiee, Jeroen Krijgsveld, Ingrid Lohmann
Nat Commun. 2020; 11: 1388. Published online 2020 Mar 13. doi: 10.1038/s41467-020-15223-x
PMCID:
PMC7069958
AbstractArticlePDF–7.7M

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