PMC Links for GEO Profiles (Select 21471966) - PMC

Juan Antonio Sánchez-Alcañiz, Ana Florencia Silbering, Vincent Croset, Giovanna Zappia, Anantha Krishna Sivasubramaniam, Liliane Abuin, Saumya Yashmohini Sahai, Daniel Münch, Kathrin Steck, Thomas O. Auer, Steeve Cruchet, G. Larisa Neagu-Maier, Simon G. Sprecher, Carlos Ribeiro, Nilay Yapici, Richard Benton

Nat Commun. 2018; 9: 4252. Published online 2018 Oct 12. doi: 10.1038/s41467-018-06453-1

Correction in:: Nat Commun. 2020; 11: 1131.

PMCID:: PMC6185939

Abstract Article PDF–4.1M

Select item 56890024.

Transcription elongation rate has a tissue-specific impact on alternative cleavage and polyadenylation in Drosophila melanogaster

Xiaochuan Liu, Jaime Freitas, Dinghai Zheng, Marta S. Oliveira, Mainul Hoque, Torcato Martins, Telmo Henriques, Bin Tian, Alexandra Moreira

RNA. 2017 Dec; 23(12): 1807–1816. doi: 10.1261/rna.062661.117

PMCID:: PMC5689002

Abstract Article PDF–4.0M

Select item 45283305.

Gene Model Annotations for Drosophila melanogaster: The Rule-Benders

Madeline A. Crosby, L. Sian Gramates, Gilberto dos Santos, Beverley B. Matthews, Susan E. St. Pierre, Pinglei Zhou, Andrew J. Schroeder, Kathleen Falls, David B. Emmert, Susan M. Russo, William M. Gelbart, the FlyBase Consortium

G3 (Bethesda) 2015 Aug; 5(8): 1737–1749. Published online 2015 Jun 24. doi: 10.1534/g3.115.018937

PMCID:: PMC4528330

Abstract Article PDF–2.2M

Select item 45283296.

Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data

Beverley B. Matthews, Gilberto dos Santos, Madeline A. Crosby, David B. Emmert, Susan E. St. Pierre, L. Sian Gramates, Pinglei Zhou, Andrew J. Schroeder, Kathleen Falls, Victor Strelets, Susan M. Russo, William M. Gelbart, the FlyBase Consortium

G3 (Bethesda) 2015 Aug; 5(8): 1721–1736. Published online 2015 Jun 24. doi: 10.1534/g3.115.018929

PMCID:: PMC4528329

Abstract Article PDF–4.9M

Select item 43980507.

The Genetic Basis for Variation in Olfactory Behavior in Drosophila melanogaster

Gunjan H. Arya, Michael M. Magwire, Wen Huang, Yazmin L. Serrano-Negron, Trudy F.C. Mackay, Robert R.H. Anholt

Chem Senses. 2015 May; 40(4): 233–243. Published online 2015 Feb 15. doi: 10.1093/chemse/bjv001

PMCID:: PMC4398050

Abstract Article PDF–8.9M

Select item 43942688.

Candidate ionotropic taste receptors in the Drosophila larva

Shannon Stewart, Tong-Wey Koh, Arpan C. Ghosh, John R. Carlson

Proc Natl Acad Sci U S A. 2015 Apr 7; 112(14): 4195–4201. Published online 2015 Mar 30. doi: 10.1073/pnas.1503292112

PMCID:: PMC4394268

Abstract Article PDF–1.2M

Select item 43528879.

The Release 6 reference sequence of the Drosophila melanogaster genome

Roger A. Hoskins, Joseph W. Carlson, Kenneth H. Wan, Soo Park, Ivonne Mendez, Samuel E. Galle, Benjamin W. Booth, Barret D. Pfeiffer, Reed A. George, Robert Svirskas, Martin Krzywinski, Jacqueline Schein, Maria Carmela Accardo, Elisabetta Damia, Giovanni Messina, María Méndez-Lago, Beatriz de Pablos, Olga V. Demakova, Evgeniya N. Andreyeva, Lidiya V. Boldyreva, Marco Marra, A. Bernardo Carvalho, Patrizio Dimitri, Alfredo Villasante, Igor F. Zhimulev, Gerald M. Rubin, Gary H. Karpen, Susan E. Celniker

Genome Res. 2015 Mar; 25(3): 445–458. doi: 10.1101/gr.185579.114

PMCID:: PMC4352887

Abstract Article PDF–1022K

Select item 414188810.

The Drosophila IR20a clade of Ionotropic Receptors are candidate taste and pheromone receptors

Tong-Wey Koh, Zhe He, Srinivas Gorur-Shandilya, Karen Menuz, Nikki K. Larter, Shannon Stewart, John R. Carlson

Neuron. Author manuscript; available in PMC 2015 Aug 20.

Published in final edited form as: Neuron. 2014 Aug 20; 83(4): 850–865. Published online 2014 Aug 7. doi: 10.1016/j.neuron.2014.07.012

PMCID:: PMC4141888

Abstract Article PDF–1.4M

Select item 346946711.

The Many Landscapes of Recombination in Drosophila melanogaster

Josep M. Comeron, Ramesh Ratnappan, Samuel Bailin

PLoS Genet. 2012 Oct; 8(10): e1002905. Published online 2012 Oct 11. doi: 10.1371/journal.pgen.1002905

PMCID:: PMC3469467

Abstract Article PDF–1.6M

Select item 292427612.

Ancient Protostome Origin of Chemosensory Ionotropic Glutamate Receptors and the Evolution of Insect Taste and Olfaction

Vincent Croset, Raphael Rytz, Scott F. Cummins, Aidan Budd, David Brawand, Henrik Kaessmann, Toby J. Gibson, Richard Benton

PLoS Genet. 2010 Aug; 6(8): e1001064. Published online 2010 Aug 19. doi: 10.1371/journal.pgen.1001064

PMCID:: PMC2924276

Abstract Article PDF–6.7M

Select item 282505313.

Sequence Finishing and Mapping of Drosophila melanogaster Heterochromatin

Roger A. Hoskins, Joseph W. Carlson, Cameron Kennedy, David Acevedo, Martha Evans-Holm, Erwin Frise, Kenneth H. Wan, Soo Park, Maria Mendez-Lago, Fabrizio Rossi, Alfredo Villasante, Patrizio Dimitri, Gary H. Karpen, Susan E. Celniker

Science. Author manuscript; available in PMC 2010 Feb 19.

Published in final edited form as: Science. 2007 Jun 15; 316(5831): 1625–1628. doi: 10.1126/science.1139816

PMCID:: PMC2825053

Abstract Article PDF–858K

Select item 281928014.

The Release 5.1 Annotation of Drosophila melanogaster Heterochromatin

Christopher D. Smith, ShengQiang Shu, Christopher J. Mungall, Gary H. Karpen

Science. Author manuscript; available in PMC 2010 Feb 10.

Published in final edited form as: Science. 2007 Jun 15; 316(5831): 1586. doi: 10.1126/science.1139815

Correction in:: volume 317 on page 1325

PMCID:: PMC2819280

Abstract Article PDF–1.3M

Select item 270953615.

Variant ionotropic glutamate receptors as chemosensory receptors in Drosophila

Richard Benton, Kirsten S. Vannice, Carolina Gomez-Diaz, Leslie B. Vosshall

Cell. Author manuscript; available in PMC 2009 Jul 13.

Published in final edited form as: Cell. 2009 Jan 9; 136(1): 149–162. doi: 10.1016/j.cell.2008.12.001

PMCID:: PMC2709536

Abstract Article PDF–6.9M

Select item 265124016.

The B-type lamin is required for somatic repression of testis-specific gene clusters

Y. Y. Shevelyov, S. A. Lavrov, L. M. Mikhaylova, I. D. Nurminsky, R. J. Kulathinal, K. S. Egorova, Y. M. Rozovsky, D. I. Nurminsky

Proc Natl Acad Sci U S A. 2009 Mar 3; 106(9): 3282–3287. Published online 2009 Feb 13. doi: 10.1073/pnas.0811933106

PMCID:: PMC2651240

Abstract Article PDF–756K

Select item 118564817.

Combined Evidence Annotation of Transposable Elements in Genome Sequences

Hadi Quesneville, Casey M Bergman, Olivier Andrieu, Delphine Autard, Danielle Nouaud, Michael Ashburner, Dominique Anxolabehere

PLoS Comput Biol. 2005 Jul; 1(2): e22. Published online 2005 Jul 29. doi: 10.1371/journal.pcbi.0010022

PMCID:: PMC1185648

Abstract Article PDF–273K

Select item 106287318.

Regulated chromatin domain comprising cluster of co-expressed genes in Drosophila melanogaster

Alla I. Kalmykova, Dmitry I. Nurminsky, Dmirty V. Ryzhov, Yuri Y. Shevelyov

Nucleic Acids Res. 2005; 33(5): 1435–1444. Published online 2005 Mar 8. doi: 10.1093/nar/gki281

PMCID:: PMC1062873

Abstract Article PDF–235K

Select item 15118719.

Heterochromatic sequences in a Drosophila whole-genome shotgun assembly

Roger A Hoskins, Christopher D Smith, Joseph W Carlson, A Bernardo Carvalho, Aaron Halpern, Joshua S Kaminker, Cameron Kennedy, Chris J Mungall, Beth A Sullivan, Granger G Sutton, Jiro C Yasuhara, Barbara T Wakimoto, Eugene W Myers, Susan E Celniker, Gerald M Rubin, Gary H Karpen

Genome Biol. 2002; 3(12): research0085.1–85.16. Published online 2002 Dec 31. doi: 10.1186/gb-2002-3-12-research0085

PMCID:: PMC151187

Abstract Article PDF–280K

Select item 15118620.

The transposable elements of the Drosophila melanogaster euchromatin: a genomics perspective

Joshua S Kaminker, Casey M Bergman, Brent Kronmiller, Joseph Carlson, Robert Svirskas, Sandeep Patel, Erwin Frise, David A Wheeler, Suzanna E Lewis, Gerald M Rubin, Michael Ashburner, Susan E Celniker

Genome Biol. 2002; 3(12): research0084.1–84.2. Published online 2002 Dec 23. doi: 10.1186/gb-2002-3-12-research0084

PMCID:: PMC151186

Abstract Article PDF–330K

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