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Select item 105460681.

Single-cell sequencing of tumor-associated macrophages in a Drosophila model

Dilan Khalili, Mubasher Mohammed, Martin Kunc, Martina Sindlerova, Johan Ankarklev, Ulrich Theopold

Front Immunol. 2023; 14: 1243797. Published online 2023 Sep 19. doi: 10.3389/fimmu.2023.1243797

PMCID:: PMC10546068

Abstract Article PDF–7.2M

Select item 101057362.

Next-generation large-scale binary protein interaction network for Drosophila melanogaster

Hong-Wen Tang, Kerstin Spirohn, Yanhui Hu, Tong Hao, István A. Kovács, Yue Gao, Richard Binari, Donghui Yang-Zhou, Kenneth H. Wan, Joel S. Bader, Dawit Balcha, Wenting Bian, Benjamin W. Booth, Atina G. Coté, Steffi de Rouck, Alice Desbuleux, Kah Yong Goh, Dae-Kyum Kim, Jennifer J. Knapp, Wen Xing Lee, Irma Lemmens, Cathleen Li, Mian Li, Roujia Li, Hyobin Julianne Lim, Yifang Liu, Katja Luck, Dylan Markey, Carl Pollis, Sudharshan Rangarajan, Jonathan Rodiger, Sadie Schlabach, Yun Shen, Dayag Sheykhkarimli, Bridget TeeKing, Frederick P. Roth, Jan Tavernier, Michael A. Calderwood, David E. Hill, Susan E. Celniker, Marc Vidal, Norbert Perrimon, Stephanie E. Mohr

Nat Commun. 2023; 14: 2162. Published online 2023 Apr 15. doi: 10.1038/s41467-023-37876-0

PMCID:: PMC10105736

Abstract Article PDF–3.2M

Select item 92316073.

Transcriptional and functional motifs defining renal function revealed by single-nucleus RNA sequencing

Jun Xu, Yifang Liu, Hongjie Li, Alexander J. Tarashansky, Colin H. Kalicki, Ruei-Jiun Hung, Yanhui Hu, Aram Comjean, Sai Saroja Kolluru, Bo Wang, Stephen R. Quake, Liqun Luo, Andrew P. McMahon, Julian A. T. Dow, Norbert Perrimon

Proc Natl Acad Sci U S A. 2022 Jun 21; 119(25): e2203179119. Published online 2022 Jun 13. doi: 10.1073/pnas.2203179119

PMCID:: PMC9231607

Abstract Article PDF–2.7M

Select item 90701214.

Glial ER and GAP Junction Mediated Ca²⁺ Waves are Crucial to Maintain Normal Brain Excitability

Shirley Weiss, Lauren C. Clamon, Julia E. Manoim, Kiel G. Ormerod, Moshe Parnas, J. Troy Littleton

Glia. Author manuscript; available in PMC 2022 May 5.

Published in final edited form as: Glia. 2022 Jan; 70(1): 123–144. Published online 2021 Sep 16. doi: 10.1002/glia.24092

PMCID:: PMC9070121

Abstract Article PDF–3.0M

Select item 86644865.

Genome-wide phenotypic RNAi screen in the Drosophila wing: phenotypic description of functional classes

Ana López-Varea, Patricia Vega-Cuesta, Ana Ruiz-Gómez, Cristina M Ostalé, Cristina Molnar, Covadonga F Hevia, Mercedes Martín, Maria F Organista, Jesus de Celis, Joaquín Culí, Nuria Esteban, Jose F de Celis

G3 (Bethesda) 2021 Dec; 11(12): jkab349. Published online 2021 Oct 2. doi: 10.1093/g3journal/jkab349

PMCID:: PMC8664486

Abstract Article PDF–3.1M

Select item 83961796.

Application of Fluorescent Proteins for Functional Dissection of the Drosophila Visual System

Thomas K. Smylla, Krystina Wagner, Armin Huber

Int J Mol Sci. 2021 Aug; 22(16): 8930. Published online 2021 Aug 19. doi: 10.3390/ijms22168930

PMCID:: PMC8396179

Abstract Article PDF–2.6M

Select item 82474137.

Harnessing the paradoxical phenotypes of APOE ɛ2 and APOE ɛ4 to identify genetic modifiers in Alzheimer's disease

Young Won Kim, Ismael Al‐Ramahi, Amanda Koire, Stephen J. Wilson, Daniel M. Konecki, Samantha Mota, Shirin Soleimani, Juan Botas, Olivier Lichtarge

Alzheimers Dement. 2021 May; 17(5): 831–846. Published online 2020 Dec 7. doi: 10.1002/alz.12240

PMCID:: PMC8247413

Abstract Article PDF–1.9M

Select item 76113428.

Emerging perspectives on multidomain phosphatidylinositol transfer proteins

Padinjat Raghu, Bishal Basak, Harini Krishnan

Biochim Biophys Acta Mol Cell Biol Lipids. Author manuscript; available in PMC 2021 Sep 1.

Published in final edited form as: Biochim Biophys Acta Mol Cell Biol Lipids. 2021 Sep 1; 1866(9): 158984. Published online 2021 Jun 9. doi: 10.1016/j.bbalip.2021.158984

PMCID:: PMC7611342

Abstract Article PDF–1.1M

Select item 75070149.

Extended synaptotagmin regulates membrane contact site structure and lipid transfer function in vivo

Vaisaly R Nath, Shirish Mishra, Bishal Basak, Deepti Trivedi, Padinjat Raghu

EMBO Rep. 2020 Sep 3; 21(9): e50264. Published online 2020 Jul 27. doi: 10.15252/embr.202050264

PMCID:: PMC7507014

Abstract Article PDF–2.8M

Select item 696157810.

CRISPR-based modular assembly of a UAS-cDNA/ORF plasmid library for more than 5500 Drosophila genes conserved in humans

Ping Wei, Wen Xue, Yun Zhao, Guang Ning, Jiwu Wang

Genome Res. 2020 Jan; 30(1): 95–106. doi: 10.1101/gr.250811.119

PMCID:: PMC6961578

Abstract Article PDF–3.6M

Select item 570780511.

Landscape and evolution of tissue-specific alternative polyadenylation across Drosophila species

Piero Sanfilippo, Jiayu Wen, Eric C. Lai

Genome Biol. 2017; 18: 229. Published online 2017 Nov 30. doi: 10.1186/s13059-017-1358-0

PMCID:: PMC5707805

Abstract Article PDF–3.2M

Select item 568900212.

Transcription elongation rate has a tissue-specific impact on alternative cleavage and polyadenylation in Drosophila melanogaster

Xiaochuan Liu, Jaime Freitas, Dinghai Zheng, Marta S. Oliveira, Mainul Hoque, Torcato Martins, Telmo Henriques, Bin Tian, Alexandra Moreira

RNA. 2017 Dec; 23(12): 1807–1816. doi: 10.1261/rna.062661.117

PMCID:: PMC5689002

Abstract Article PDF–4.0M

Select item 567623113.

Extended Synaptotagmin Localizes to Presynaptic ER and Promotes Neurotransmission and Synaptic Growth in Drosophila

Koto Kikuma, Xiling Li, Daniel Kim, David Sutter, Dion K. Dickman

Genetics. 2017 Nov; 207(3): 993–1006. Published online 2017 Sep 7. doi: 10.1534/genetics.117.300261

PMCID:: PMC5676231

Abstract Article PDF–2.2M

Select item 534854214.

Astrocyte Ca²⁺ Influx Negatively Regulates Neuronal Activity

Yao V. Zhang, Kiel G. Ormerod, J. Troy Littleton

eNeuro. 2017 Mar-Apr; 4(2): ENEURO.0340-16.2017. Prepublished online 2017 Mar 2. Published online 2017 Mar 10. doi: 10.1523/ENEURO.0340-16.2017

PMCID:: PMC5348542

Abstract Article PDF–2.8M

Select item 532255815.

Highly Constrained Intergenic Drosophila Ultraconserved Elements Are Candidate ncRNAs

Andrew D. Kern, Daniel A. Barbash, Joshua Chang Mell, Daniel Hupalo, Amanda Jensen

Genome Biol Evol. 2015 Mar; 7(3): 689–698. Published online 2015 Jan 23. doi: 10.1093/gbe/evv011

PMCID:: PMC5322558

Abstract Article PDF–416K

Select item 530735916.

A pupal transcriptomic screen identifies Ral as a target of store-operated calcium entry in Drosophila neurons

Shlesha Richhariya, Siddharth Jayakumar, Katharine Abruzzi, Michael Rosbash, Gaiti Hasan

Sci Rep. 2017; 7: 42586. Published online 2017 Feb 14. doi: 10.1038/srep42586

PMCID:: PMC5307359

Abstract Article PDF–2.1M

Select item 452833017.

Gene Model Annotations for Drosophila melanogaster: The Rule-Benders

Madeline A. Crosby, L. Sian Gramates, Gilberto dos Santos, Beverley B. Matthews, Susan E. St. Pierre, Pinglei Zhou, Andrew J. Schroeder, Kathleen Falls, David B. Emmert, Susan M. Russo, William M. Gelbart, the FlyBase Consortium

G3 (Bethesda) 2015 Aug; 5(8): 1737–1749. Published online 2015 Jun 24. doi: 10.1534/g3.115.018937

PMCID:: PMC4528330

Abstract Article PDF–2.2M

Select item 452832918.

Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data

Beverley B. Matthews, Gilberto dos Santos, Madeline A. Crosby, David B. Emmert, Susan E. St. Pierre, L. Sian Gramates, Pinglei Zhou, Andrew J. Schroeder, Kathleen Falls, Victor Strelets, Susan M. Russo, William M. Gelbart, the FlyBase Consortium

G3 (Bethesda) 2015 Aug; 5(8): 1721–1736. Published online 2015 Jun 24. doi: 10.1534/g3.115.018929

PMCID:: PMC4528329

Abstract Article PDF–4.9M

Select item 435288719.

The Release 6 reference sequence of the Drosophila melanogaster genome

Roger A. Hoskins, Joseph W. Carlson, Kenneth H. Wan, Soo Park, Ivonne Mendez, Samuel E. Galle, Benjamin W. Booth, Barret D. Pfeiffer, Reed A. George, Robert Svirskas, Martin Krzywinski, Jacqueline Schein, Maria Carmela Accardo, Elisabetta Damia, Giovanni Messina, María Méndez-Lago, Beatriz de Pablos, Olga V. Demakova, Evgeniya N. Andreyeva, Lidiya V. Boldyreva, Marco Marra, A. Bernardo Carvalho, Patrizio Dimitri, Alfredo Villasante, Igor F. Zhimulev, Gerald M. Rubin, Gary H. Karpen, Susan E. Celniker

Genome Res. 2015 Mar; 25(3): 445–458. doi: 10.1101/gr.185579.114

PMCID:: PMC4352887

Abstract Article PDF–1022K

Select item 365673020.

Reproductive Status Alters Transcriptomic Response to Infection in Female Drosophila melanogaster

Sarah M. Short, Brian P. Lazzaro

G3 (Bethesda) 2013 May; 3(5): 827–840. Published online 2013 May 1. doi: 10.1534/g3.112.005306

PMCID:: PMC3656730

Abstract Article PDF–1.9M

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