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Items: 1 to 20 of 35

1.
Next-generation large-scale binary protein interaction network for Drosophila melanogaster
Hong-Wen Tang, Kerstin Spirohn, Yanhui Hu, Tong Hao, István A. Kovács, Yue Gao, Richard Binari, Donghui Yang-Zhou, Kenneth H. Wan, Joel S. Bader, Dawit Balcha, Wenting Bian, Benjamin W. Booth, Atina G. Coté, Steffi de Rouck, Alice Desbuleux, Kah Yong Goh, Dae-Kyum Kim, Jennifer J. Knapp, Wen Xing Lee, Irma Lemmens, Cathleen Li, Mian Li, Roujia Li, Hyobin Julianne Lim, Yifang Liu, Katja Luck, Dylan Markey, Carl Pollis, Sudharshan Rangarajan, Jonathan Rodiger, Sadie Schlabach, Yun Shen, Dayag Sheykhkarimli, Bridget TeeKing, Frederick P. Roth, Jan Tavernier, Michael A. Calderwood, David E. Hill, Susan E. Celniker, Marc Vidal, Norbert Perrimon, Stephanie E. Mohr
Nat Commun. 2023; 14: 2162. Published online 2023 Apr 15. doi: 10.1038/s41467-023-37876-0
PMCID:
PMC10105736
AbstractArticlePDF–3.2M
2.
Point mutations that inactivate MGAT4D-L, an inhibitor of MGAT1 and complex N-glycan synthesis
Ayodele Akintayo, Joshua Mayoral, Masahiro Asada, Jian Tang, Subha Sundaram, Pamela Stanley
J Biol Chem. 2020 Oct 9; 295(41): 14053–14064. Published online 2020 Aug 6. doi: 10.1074/jbc.RA120.014784
PMCID:
PMC7549026
AbstractArticlePDF–2.9M
3.
Blue light induces a neuroprotective gene expression program in Drosophila photoreceptors
Hana Hall, Jingqun Ma, Sudhanshu Shekhar, Walter D. Leon-Salas, Vikki M. Weake
BMC Neurosci. 2018; 19: 43. Published online 2018 Jul 20. doi: 10.1186/s12868-018-0443-y
PMCID:
PMC6053765
AbstractArticlePDF–1.7M
4.
Landscape and evolution of tissue-specific alternative polyadenylation across Drosophila species
Piero Sanfilippo, Jiayu Wen, Eric C. Lai
Genome Biol. 2017; 18: 229. Published online 2017 Nov 30. doi: 10.1186/s13059-017-1358-0
PMCID:
PMC5707805
AbstractArticlePDF–3.2M
5.
Transcription elongation rate has a tissue-specific impact on alternative cleavage and polyadenylation in Drosophila melanogaster
Xiaochuan Liu, Jaime Freitas, Dinghai Zheng, Marta S. Oliveira, Mainul Hoque, Torcato Martins, Telmo Henriques, Bin Tian, Alexandra Moreira
RNA. 2017 Dec; 23(12): 1807–1816. doi: 10.1261/rna.062661.117
PMCID:
PMC5689002
AbstractArticlePDF–4.0M
6.
Evolutionary Dynamics of Abundant Stop Codon Readthrough
Irwin Jungreis, Clara S. Chan, Robert M. Waterhouse, Gabriel Fields, Michael F. Lin, Manolis Kellis
Mol Biol Evol. 2016 Dec; 33(12): 3108–3132. Published online 2016 Sep 7. doi: 10.1093/molbev/msw189
PMCID:
PMC5100048
AbstractArticlePDF–3.6M
7.
Meigo governs dendrite targeting specificity by modulating Ephrin level and N-glycosylation
Sayaka U Sekine, Shuka Haraguchi, Kinhong Chao, Tomoko Kato, Liqun Luo, Masayuki Miura, Takahiro Chihara
Nat Neurosci. Author manuscript; available in PMC 2016 Mar 6.
Published in final edited form as: Nat Neurosci. 2013 Jun; 16(6): 683–691. Published online 2013 Apr 28. doi: 10.1038/nn.3389
PMCID:
PMC4779446
AbstractArticlePDF–1.1M
8.
Proteome-wide dataset supporting the study of ancient metazoan macromolecular complexes
Sadhna Phanse, Cuihong Wan, Blake Borgeson, Fan Tu, Kevin Drew, Greg Clark, Xuejian Xiong, Olga Kagan, Julian Kwan, Alexandr Bezginov, Kyle Chessman, Swati Pal, Graham Cromar, Ophelia Papoulas, Zuyao Ni, Daniel R. Boutz, Snejana Stoilova, Pierre C. Havugimana, Xinghua Guo, Ramy H. Malty, Mihail Sarov, Jack Greenblatt, Mohan Babu, W. Brent Derry, Elisabeth R. Tillier, John B. Wallingford, John Parkinson, Edward M. Marcotte, Andrew Emili
Data Brief. 2016 Mar; 6: 715–721. Published online 2015 Dec 12. doi: 10.1016/j.dib.2015.11.062
PMCID:
PMC4738005
AbstractArticlePDF–205K
9.
Phenotype-based clustering of glycosylation-related genes by RNAi-mediated gene silencing
Miki Yamamoto-Hino, Hideki Yoshida, Tomomi Ichimiya, Sho Sakamura, Megumi Maeda, Yoshinobu Kimura, Norihiko Sasaki, Kiyoko F Aoki-Kinoshita, Akiko Kinoshita-Toyoda, Hidenao Toyoda, Ryu Ueda, Shoko Nishihara, Satoshi Goto
Genes Cells. 2015 Jun; 20(6): 521–542. Published online 2015 May 4. doi: 10.1111/gtc.12246
PMCID:
PMC4682476
AbstractArticlePDF–1.1M
10.
Gene Model Annotations for Drosophila melanogaster: The Rule-Benders
Madeline A. Crosby, L. Sian Gramates, Gilberto dos Santos, Beverley B. Matthews, Susan E. St. Pierre, Pinglei Zhou, Andrew J. Schroeder, Kathleen Falls, David B. Emmert, Susan M. Russo, William M. Gelbart, the FlyBase Consortium
G3 (Bethesda) 2015 Aug; 5(8): 1737–1749. Published online 2015 Jun 24. doi: 10.1534/g3.115.018937
PMCID:
PMC4528330
AbstractArticlePDF–2.2M
11.
Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data
Beverley B. Matthews, Gilberto dos Santos, Madeline A. Crosby, David B. Emmert, Susan E. St. Pierre, L. Sian Gramates, Pinglei Zhou, Andrew J. Schroeder, Kathleen Falls, Victor Strelets, Susan M. Russo, William M. Gelbart, the FlyBase Consortium
G3 (Bethesda) 2015 Aug; 5(8): 1721–1736. Published online 2015 Jun 24. doi: 10.1534/g3.115.018929
PMCID:
PMC4528329
AbstractArticlePDF–4.9M
12.
The Genetic Basis for Variation in Olfactory Behavior in Drosophila melanogaster
Gunjan H. Arya, Michael M. Magwire, Wen Huang, Yazmin L. Serrano-Negron, Trudy F.C. Mackay, Robert R.H. Anholt
Chem Senses. 2015 May; 40(4): 233–243. Published online 2015 Feb 15. doi: 10.1093/chemse/bjv001
PMCID:
PMC4398050
AbstractArticlePDF–8.9M
13.
The Release 6 reference sequence of the Drosophila melanogaster genome
Roger A. Hoskins, Joseph W. Carlson, Kenneth H. Wan, Soo Park, Ivonne Mendez, Samuel E. Galle, Benjamin W. Booth, Barret D. Pfeiffer, Reed A. George, Robert Svirskas, Martin Krzywinski, Jacqueline Schein, Maria Carmela Accardo, Elisabetta Damia, Giovanni Messina, María Méndez-Lago, Beatriz de Pablos, Olga V. Demakova, Evgeniya N. Andreyeva, Lidiya V. Boldyreva, Marco Marra, A. Bernardo Carvalho, Patrizio Dimitri, Alfredo Villasante, Igor F. Zhimulev, Gerald M. Rubin, Gary H. Karpen, Susan E. Celniker
Genome Res. 2015 Mar; 25(3): 445–458. doi: 10.1101/gr.185579.114
PMCID:
PMC4352887
AbstractArticlePDF–1022K
14.
Enzymatic properties and subtle differences in the substrate specificity of phylogenetically distinct invertebrate N-glycan processing hexosaminidases
Martin Dragosits, Shi Yan, Ebrahim Razzazi-Fazeli, Iain B H Wilson, Dubravko Rendic
Glycobiology. 2015 Apr; 25(4): 448–464. Published online 2014 Dec 8. doi: 10.1093/glycob/cwu132
PMCID:
PMC4339880
AbstractArticlePDF–1.2M
15.
Mutations in Four Glycosyl Hydrolases Reveal a Highly Coordinated Pathway for Rhodopsin Biosynthesis and N-Glycan Trimming in Drosophila melanogaster
Erica E. Rosenbaum, Eva Vasiljevic, Kimberley S. Brehm, Nansi Jo Colley
PLoS Genet. 2014 May; 10(5): e1004349. Published online 2014 May 1. doi: 10.1371/journal.pgen.1004349
PMCID:
PMC4006722
AbstractArticlePDF–7.7M
16.
Identification of Genes Encoding N-glycan Processing β-N-acetylglucosaminidases in Trichoplusia ni and Bombyx mori: Implications for Glycoengineering of Baculovirus Expression Systems
Christoph Geisler, Donald L. Jarvis
Biotechnol Prog. Author manuscript; available in PMC 2013 Apr 12.
Published in final edited form as: Biotechnol Prog. 2010 Jan-Feb; 26(1): 34–44. doi: 10.1002/btpr.298
PMCID:
PMC3624021
AbstractArticlePDF–1.5M
17.
The N’s and O’s of Drosophila Glycoprotein Glycobiology
Toshihiko Katoh, Michael Tiemeyer
Glycoconj J. Author manuscript; available in PMC 2014 Jan 1.
Published in final edited form as: Glycoconj J. 2013 Jan; 30(1): 57–66. Published online 2012 Aug 31. doi: 10.1007/s10719-012-9442-x
PMCID:
PMC3548036
AbstractArticlePDF–1.0M
18.
High-fidelity promoter profiling reveals widespread alternative promoter usage and transposon-driven developmental gene expression
Philippe Batut, Alexander Dobin, Charles Plessy, Piero Carninci, Thomas R. Gingeras
Genome Res. 2013 Jan; 23(1): 169–180. doi: 10.1101/gr.139618.112
PMCID:
PMC3530677
AbstractArticlePDF–1.5M
19.
The Many Landscapes of Recombination in Drosophila melanogaster
Josep M. Comeron, Ramesh Ratnappan, Samuel Bailin
PLoS Genet. 2012 Oct; 8(10): e1002905. Published online 2012 Oct 11. doi: 10.1371/journal.pgen.1002905
PMCID:
PMC3469467
AbstractArticlePDF–1.6M
20.
Substrate Specificities and Intracellular Distributions of Three N-glycan Processing Enzymes Functioning at a Key Branch Point in the Insect N-Glycosylation Pathway
Christoph Geisler, Donald L. Jarvis
J Biol Chem. 2012 Mar 2; 287(10): 7084–7097. Published online 2012 Jan 11. doi: 10.1074/jbc.M111.296814
PMCID:
PMC3293541
AbstractArticlePDF–2.2M

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