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Items: 1 to 20 of 39

1.
Amyloid fibril proteomics of AD brains reveals modifiers of aggregation and toxicity
Arun Upadhyay, Deepak Chhangani, Nalini R. Rao, Julia Kofler, Robert Vassar, Diego E. Rincon-Limas, Jeffrey N. Savas
Mol Neurodegener. 2023; 18: 61. Published online 2023 Sep 14. doi: 10.1186/s13024-023-00654-z
PMCID:
PMC10503190
AbstractArticlePDF–8.6M
2.
Identification of the stress granule transcriptome via RNA-editing in single cells and in vivo
Wessel van Leeuwen, Michael VanInsberghe, Nico Battich, Fredrik Salmén, Alexander van Oudenaarden, Catherine Rabouille
Cell Rep Methods. 2022 Jun 20; 2(6): 100235. Published online 2022 Jun 20. doi: 10.1016/j.crmeth.2022.100235
PMCID:
PMC9243631
AbstractArticlePDF–5.5M
3.
The transcription factor Xrp1 orchestrates both reduced translation and cell competition upon defective ribosome assembly or function
Marianthi Kiparaki, Chaitali Khan, Virginia Folgado-Marco, Jacky Chuen, Panagiotis Moulos, Nicholas E Baker
eLife. 2022; 11: e71705. Published online 2022 Feb 18. doi: 10.7554/eLife.71705
PMCID:
PMC8933008
AbstractArticlePDF–17M
4.
Somatic genetic rescue of a germline ribosome assembly defect
Shengjiang Tan, Laëtitia Kermasson, Christine Hilcenko, Vasileios Kargas, David Traynor, Ahmed Z. Boukerrou, Norberto Escudero-Urquijo, Alexandre Faille, Alexis Bertrand, Maxim Rossmann, Beatriz Goyenechea, Li Jin, Jonathan Moreil, Olivier Alibeu, Blandine Beaupain, Christine Bôle-Feysot, Stefano Fumagalli, Sophie Kaltenbach, Jean-Alain Martignoles, Cécile Masson, Patrick Nitschké, Mélanie Parisot, Aurore Pouliet, Isabelle Radford-Weiss, Frédéric Tores, Jean-Pierre de Villartay, Mohammed Zarhrate, Ai Ling Koh, Kong Boo Phua, Bruno Reversade, Peter J. Bond, Christine Bellanné-Chantelot, Isabelle Callebaut, François Delhommeau, Jean Donadieu, Alan J. Warren, Patrick Revy
Nat Commun. 2021; 12: 5044. Published online 2021 Aug 19. doi: 10.1038/s41467-021-24999-5
Correction in:
Nat Commun. 2022; 13: 3574.
PMCID:
PMC8377010
AbstractArticlePDF–3.6M
5.
The molecular landscape of neural differentiation in the developing Drosophila brain revealed by targeted scRNA-seq and multi-informatic analysis
Nigel S. Michki, Ye Li, Kayvon Sanjasaz, Yimeng Zhao, Fred Y. Shen, Logan A. Walker, Wenjia Cao, Cheng-Yu Lee, Dawen Cai
Cell Rep. Author manuscript; available in PMC 2021 May 21.
Published in final edited form as: Cell Rep. 2021 Apr 27; 35(4): 109039. doi: 10.1016/j.celrep.2021.109039
PMCID:
PMC8139287
AbstractArticlePDF–1.6M
6.
Highly effective proximate labeling in Drosophila
Bo Zhang, Yuanbing Zhang, Ji-Long Liu
G3 (Bethesda) 2021 May; 11(5): jkab077. Published online 2021 Mar 16. doi: 10.1093/g3journal/jkab077
Correction in:
G3 (Bethesda). 2022 Mar; 12(3): jkac005.
PMCID:
PMC8104946
AbstractArticlePDF–1.1M
7.
Translational induction of ATF4 during integrated stress response requires noncanonical initiation factors eIF2D and DENR
Deepika Vasudevan, Sarah D. Neuman, Amy Yang, Lea Lough, Brian Brown, Arash Bashirullah, Timothy Cardozo, Hyung Don Ryoo
Nat Commun. 2020; 11: 4677. Published online 2020 Sep 16. doi: 10.1038/s41467-020-18453-1
PMCID:
PMC7495428
AbstractArticlePDF–3.2M
8.
Landscape and evolution of tissue-specific alternative polyadenylation across Drosophila species
Piero Sanfilippo, Jiayu Wen, Eric C. Lai
Genome Biol. 2017; 18: 229. Published online 2017 Nov 30. doi: 10.1186/s13059-017-1358-0
PMCID:
PMC5707805
AbstractArticlePDF–3.2M
9.
Transcription elongation rate has a tissue-specific impact on alternative cleavage and polyadenylation in Drosophila melanogaster
Xiaochuan Liu, Jaime Freitas, Dinghai Zheng, Marta S. Oliveira, Mainul Hoque, Torcato Martins, Telmo Henriques, Bin Tian, Alexandra Moreira
RNA. 2017 Dec; 23(12): 1807–1816. doi: 10.1261/rna.062661.117
PMCID:
PMC5689002
AbstractArticlePDF–4.0M
10.
The translation factors of Drosophila melanogaster
Steven J. Marygold, Helen Attrill, Paul Lasko
Fly (Austin) 2017; 11(1): 65–74. Published online 2016 Aug 5. doi: 10.1080/19336934.2016.1220464
PMCID:
PMC5354226
AbstractArticlePDF–490K
11.
A Luciferase-fragment Complementation Assay to Detect Lipid Droplet-associated Protein-Protein Interactions
Petra Kolkhof, Michael Werthebach, Anna van de Venn, Gereon Poschmann, Lili Chen, Michael Welte, Kai Stühler, Mathias Beller
Mol Cell Proteomics. 2017 Mar; 16(3): 329–345. Published online 2016 Dec 12. doi: 10.1074/mcp.M116.061499
PMCID:
PMC5340998
AbstractArticlePDF–3.8M
12.
Proteome-wide association studies identify biochemical modules associated with a wing-size phenotype in Drosophila melanogaster
Hirokazu Okada, H. Alexander Ebhardt, Sibylle Chantal Vonesch, Ruedi Aebersold, Ernst Hafen
Nat Commun. 2016; 7: 12649. Published online 2016 Sep 1. doi: 10.1038/ncomms12649
PMCID:
PMC5025782
AbstractArticlePDF–2.2M
13.
Hedgehog Signaling Strength Is Orchestrated by the mir-310 Cluster of MicroRNAs in Response to Diet
Ibrahim Ömer Çiçek, Samir Karaca, Marko Brankatschk, Suzanne Eaton, Henning Urlaub, Halyna R. Shcherbata
Genetics. 2016 Mar; 202(3): 1167–1183. Published online 2016 Jan 22. doi: 10.1534/genetics.115.185371
PMCID:
PMC4788116
AbstractArticlePDF–4.7M
14.
Proteome-wide dataset supporting the study of ancient metazoan macromolecular complexes
Sadhna Phanse, Cuihong Wan, Blake Borgeson, Fan Tu, Kevin Drew, Greg Clark, Xuejian Xiong, Olga Kagan, Julian Kwan, Alexandr Bezginov, Kyle Chessman, Swati Pal, Graham Cromar, Ophelia Papoulas, Zuyao Ni, Daniel R. Boutz, Snejana Stoilova, Pierre C. Havugimana, Xinghua Guo, Ramy H. Malty, Mihail Sarov, Jack Greenblatt, Mohan Babu, W. Brent Derry, Elisabeth R. Tillier, John B. Wallingford, John Parkinson, Edward M. Marcotte, Andrew Emili
Data Brief. 2016 Mar; 6: 715–721. Published online 2015 Dec 12. doi: 10.1016/j.dib.2015.11.062
PMCID:
PMC4738005
AbstractArticlePDF–205K
15.
Gene Model Annotations for Drosophila melanogaster: The Rule-Benders
Madeline A. Crosby, L. Sian Gramates, Gilberto dos Santos, Beverley B. Matthews, Susan E. St. Pierre, Pinglei Zhou, Andrew J. Schroeder, Kathleen Falls, David B. Emmert, Susan M. Russo, William M. Gelbart, the FlyBase Consortium
G3 (Bethesda) 2015 Aug; 5(8): 1737–1749. Published online 2015 Jun 24. doi: 10.1534/g3.115.018937
PMCID:
PMC4528330
AbstractArticlePDF–2.2M
16.
Gene Model Annotations for Drosophila melanogaster: Impact of High-Throughput Data
Beverley B. Matthews, Gilberto dos Santos, Madeline A. Crosby, David B. Emmert, Susan E. St. Pierre, L. Sian Gramates, Pinglei Zhou, Andrew J. Schroeder, Kathleen Falls, Victor Strelets, Susan M. Russo, William M. Gelbart, the FlyBase Consortium
G3 (Bethesda) 2015 Aug; 5(8): 1721–1736. Published online 2015 Jun 24. doi: 10.1534/g3.115.018929
PMCID:
PMC4528329
AbstractArticlePDF–4.9M
17.
The Release 6 reference sequence of the Drosophila melanogaster genome
Roger A. Hoskins, Joseph W. Carlson, Kenneth H. Wan, Soo Park, Ivonne Mendez, Samuel E. Galle, Benjamin W. Booth, Barret D. Pfeiffer, Reed A. George, Robert Svirskas, Martin Krzywinski, Jacqueline Schein, Maria Carmela Accardo, Elisabetta Damia, Giovanni Messina, María Méndez-Lago, Beatriz de Pablos, Olga V. Demakova, Evgeniya N. Andreyeva, Lidiya V. Boldyreva, Marco Marra, A. Bernardo Carvalho, Patrizio Dimitri, Alfredo Villasante, Igor F. Zhimulev, Gerald M. Rubin, Gary H. Karpen, Susan E. Celniker
Genome Res. 2015 Mar; 25(3): 445–458. doi: 10.1101/gr.185579.114
PMCID:
PMC4352887
AbstractArticlePDF–1022K
18.
Transcriptional response to dietary restriction in Drosophila melanogaster
Feifei Ding, M. Pilar Gil, Michael Franklin, Jonathan Ferreira, Marc Tatar, Stephen L. Helfand, Nicola Neretti
J Insect Physiol. Author manuscript; available in PMC 2015 Oct 1.
Published in final edited form as: J Insect Physiol. 2014 Oct; 0: 101–106. Published online 2014 May 10. doi: 10.1016/j.jinsphys.2014.05.002
PMCID:
PMC4177363
AbstractArticlePDF–1.7M
19.
Competition within Introns: Splicing Wins over Polyadenylation via a General Mechanism
M. Tikhonov, P. Georgiev, O. Maksimenko
Acta Naturae. 2013 Oct-Dec; 5(4): 52–61.
PMCID:
PMC3890989
AbstractArticlePDF–399K
20.
New Components of Drosophila Leg Development Identified through Genome Wide Association Studies
Nathaniel Grubbs, Megan Leach, Xin Su, Tiffany Petrisko, Juan B. Rosario, James W. Mahaffey
PLoS One. 2013; 8(4): e60261. Published online 2013 Apr 1. doi: 10.1371/journal.pone.0060261
PMCID:
PMC3613359
AbstractArticlePDF–5.0M

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