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Items: 1 to 20 of 85

1.
Interplay of the Tfb1 pleckstrin homology domain with Rad2 and Rad4 in transcription coupled and global genomic nucleotide excision repair
Wenzhi Gong, Hannah Holmberg, Cheng Lu, Michelle Huang, Shisheng Li
Nucleic Acids Res. 2024 Jun 24; 52(11): 6333–6346. Published online 2024 Apr 18. doi: 10.1093/nar/gkae286
PMCID:
PMC11194066
AbstractArticlePDF–2.4M
2.
The social and structural architecture of the yeast protein interactome
André C. Michaelis, Andreas-David Brunner, Maximilian Zwiebel, Florian Meier, Maximilian T. Strauss, Isabell Bludau, Matthias Mann
Nature. 2023; 624(7990): 192–200. Published online 2023 Nov 15. doi: 10.1038/s41586-023-06739-5
PMCID:
PMC10700138
AbstractArticlePDF–20M
3.
Misregulation of cell cycle-dependent methylation of budding yeast CENP-A contributes to chromosomal instability
Prashant K. Mishra, Wei-Chun Au, Pedro G. Castineira, Nazrin Ali, John Stanton, Lars Boeckmann, Yoshimitsu Takahashi, Michael Costanzo, Charles Boone, Kerry S. Bloom, Peter H. Thorpe, Munira A. Basrai
Mol Biol Cell. 2023 Sep 1; 34(10): ar99. Published online 2023 Aug 17. doi: 10.1091/mbc.E23-03-0108
PMCID:
PMC10551700
AbstractArticlePDF–3.7M
4.
A systematic proximity ligation approach to studying protein‐substrate specificity identifies the substrate spectrum of the Ssh1 translocon
Nir Cohen, Naama Aviram, Maya Schuldiner
EMBO J. 2023 Jun; 42(11): e113385. Published online 2023 Apr 19. doi: 10.15252/embj.2022113385
PMCID:
PMC10233368
AbstractArticlePDF–1.2M
5.
A synthetic genetic array screen for interactions with the RNA helicase DED1 during cell stress in budding yeast
Sara B Carey, Hannah M List, Ashwin Siby, Paolo Guerra, Timothy A Bolger
G3 (Bethesda) 2023 Jan; 13(1): jkac296. Published online 2022 Nov 21. doi: 10.1093/g3journal/jkac296
PMCID:
PMC9836348
AbstractArticlePDF–857K
6.
Complex mutation profiles in mismatch repair and ribonucleotide reductase mutants reveal novel repair substrate specificity of MutS homolog (MSH) complexes
Natalie A Lamb, Jonathan E Bard, Raphael Loll-Krippleber, Grant W Brown, Jennifer A Surtees
Genetics. 2022 Aug; 221(4): iyac092. Published online 2022 Jun 10. doi: 10.1093/genetics/iyac092
PMCID:
PMC9339293
AbstractArticlePDF–7.9M
7.
New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources
Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry
Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224
PMCID:
PMC9209811
AbstractArticlePDF–818K
8.
The DNA damage-sensing NER repair factor XPC-RAD23B does not recognize bulky DNA lesions with a missing nucleotide opposite the lesion
Katie M. Feher, Alexander Kolbanovskiy, Alexander Durandin, Yoonjung Shim, Jung-Hyun Min, Yuan Cho Lee, Vladimir Shafirovich, Hong Mu, Suse Broyde, Nicholas E. Geacintov
DNA Repair (Amst) Author manuscript; available in PMC 2021 Dec 1.
Published in final edited form as: DNA Repair (Amst). 2020 Dec; 96: 102985. Published online 2020 Oct 1. doi: 10.1016/j.dnarep.2020.102985
PMCID:
PMC8423485
AbstractArticlePDF–1.5M
9.
Cryo-EM structure of TFIIH/Rad4–Rad23–Rad33 in damaged DNA opening in nucleotide excision repair
Trevor van Eeuwen, Yoonjung Shim, Hee Jong Kim, Tingting Zhao, Shrabani Basu, Benjamin A. Garcia, Craig D. Kaplan, Jung-Hyun Min, Kenji Murakami
Nat Commun. 2021; 12: 3338. Published online 2021 Jun 7. doi: 10.1038/s41467-021-23684-x
PMCID:
PMC8184850
AbstractArticlePDF–6.1M
10.
Essential histone chaperones collaborate to regulate transcription and chromatin integrity
Olga Viktorovskaya, James Chuang, Dhawal Jain, Natalia I. Reim, Francheska López-Rivera, Magdalena Murawska, Dan Spatt, L. Stirling Churchman, Peter J. Park, Fred Winston
Genes Dev. 2021 May 1; 35(9-10): 698–712. doi: 10.1101/gad.348431.121
PMCID:
PMC8091981
AbstractArticlePDF–6.4M
11.
Comprehensive Synthetic Genetic Array Analysis of Alleles That Interact with Mutation of the Saccharomyces cerevisiae RecQ Helicases Hrq1 and Sgs1
Elsbeth Sanders, Phoebe A. Nguyen, Cody M. Rogers, Matthew L. Bochman
G3 (Bethesda) 2020 Dec; 10(12): 4359–4368. Published online 2020 Oct 28. doi: 10.1534/g3.120.401709
PMCID:
PMC7718751
AbstractArticlePDF–1.2M
12.
Tethering-facilitated DNA ‘opening’ and complementary roles of β-hairpin motifs in the Rad4/XPC DNA damage sensor protein
Debamita Paul, Hong Mu, Amirrasoul Tavakoli, Qing Dai, Xuejing Chen, Sagnik Chakraborty, Chuan He, Anjum Ansari, Suse Broyde, Jung-Hyun Min
Nucleic Acids Res. 2020 Dec 2; 48(21): 12348–12364. Published online 2020 Oct 29. doi: 10.1093/nar/gkaa909
PMCID:
PMC7708039
AbstractArticlePDF–4.4M
13.
Lactate Induces Cisplatin Resistance in S. cerevisiae through a Rad4p-Dependent Process
Leslie Amaral, Filipa Mendes, Manuela Côrte-Real, Maria João Sousa, Susana Rodrigues Chaves
Oxid Med Cell Longev. 2020; 2020: 4971525. Published online 2020 Oct 23. doi: 10.1155/2020/4971525
PMCID:
PMC7604607
AbstractArticlePDF–1.5M
14.
Zuo1 supports G4 structure formation and directs repair toward nucleotide excision repair
Alessio De Magis, Silvia Götz, Mona Hajikazemi, Enikő Fekete-Szücs, Marco Caterino, Stefan Juranek, Katrin Paeschke
Nat Commun. 2020; 11: 3907. Published online 2020 Aug 6. doi: 10.1038/s41467-020-17701-8
PMCID:
PMC7413387
AbstractArticlePDF–1.2M
15.
Chaperone-Mediated Protein Disaggregation Triggers Proteolytic Clearance of Intra-nuclear Protein Inclusions
Fabian den Brave, Lucas V. Cairo, Chandhuru Jagadeesan, Carmen Ruger-Herreros, Axel Mogk, Bernd Bukau, Stefan Jentsch
Cell Rep. 2020 Jun 2; 31(9): 107680. Published online 2020 Jun 2. doi: 10.1016/j.celrep.2020.107680
PMCID:
PMC7273177
AbstractArticle
16.
Sequence specificity, energetics and mechanism of mismatch recognition by DNA damage sensing protein Rad4/XPC
Abhinandan Panigrahi, Hemanth Vemuri, Madhur Aggarwal, Kartheek Pitta, Marimuthu Krishnan
Nucleic Acids Res. 2020 Mar 18; 48(5): 2246–2257. Published online 2020 Feb 12. doi: 10.1093/nar/gkaa078
PMCID:
PMC7049735
AbstractArticlePDF–1.0M
17.
Endosome and Golgi‐associated degradation (EGAD) of membrane proteins regulates sphingolipid metabolism
Oliver Schmidt, Yannick Weyer, Verena Baumann, Michael A Widerin, Sebastian Eising, Mihaela Angelova, Alexander Schleiffer, Leopold Kremser, Herbert Lindner, Matthias Peter, Florian Fröhlich, David Teis
EMBO J. 2019 Aug 1; 38(15): e101433. Published online 2019 May 27. doi: 10.15252/embj.2018101433
PMCID:
PMC6669922
AbstractArticlePDF–2.8M
18.
Structure and mechanism of pyrimidine–pyrimidone (6-4) photoproduct recognition by the Rad4/XPC nucleotide excision repair complex
Debamita Paul, Hong Mu, Hong Zhao, Ouathek Ouerfelli, Philip D Jeffrey, Suse Broyde, Jung-Hyun Min
Nucleic Acids Res. 2019 Jul 9; 47(12): 6015–6028. Published online 2019 May 20. doi: 10.1093/nar/gkz359
PMCID:
PMC6614856
AbstractArticlePDF–2.9M
19.
MOLECULAR BASIS FOR DAMAGE RECOGNITION AND VERIFICATION BY XPC-RAD23B AND TFIIH IN NUCLEOTIDE EXCISION REPAIR
Hong Mu, Nicholas E. Geacintov, Suse Broyde, Jung-Eun Yeo, Orlando D. Schärer
DNA Repair (Amst) Author manuscript; available in PMC 2019 Nov 1.
Published in final edited form as: DNA Repair (Amst). 2018 Nov; 71: 33–42. Published online 2018 Aug 23. doi: 10.1016/j.dnarep.2018.08.005
PMCID:
PMC6340764
AbstractArticlePDF–1.0M
20.
Lesion Sensing during Initial Binding by Yeast XPC/Rad4: Toward Predicting Resistance to Nucleotide Excision Repair
Hong Mu, Yingkai Zhang, Nicholas E. Geacintov, Suse Broyde
Chem Res Toxicol. 2018 Nov 19; 31(11): 1260–1268. Published online 2018 Oct 4. doi: 10.1021/acs.chemrestox.8b00231
PMCID:
PMC6247245
AbstractArticlePDF–6.6M

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