PMC Links for GEO Profiles (Select 22607016) - PMC

Edward L. Huttlin, Raphael J. Bruckner, Jose Navarrete-Perea, Joe R. Cannon, Kurt Baltier, Fana Gebreab, Melanie P. Gygi, Alexandra Thornock, Gabriela Zarraga, Stanley Tam, John Szpyt, Brandon M. Gassaway, Alexandra Panov, Hannah Parzen, Sipei Fu, Arvene Golbazi, Eila Maenpaa, Keegan Stricker, Sanjukta Guha Thakurta, Tian Zhang, Ramin Rad, Joshua Pan, David P. Nusinow, Joao A. Paulo, Devin K. Schweppe, Laura Pontano Vaites, J. Wade Harper, Steven P. Gygi

Cell. Author manuscript; available in PMC 2022 May 27.

Published in final edited form as: Cell. 2021 May 27; 184(11): 3022–3040.e28. Published online 2021 May 6. doi: 10.1016/j.cell.2021.04.011

PMCID:: PMC8165030

Abstract Article PDF–2.2M

Select item 80090484.

Impact of cytosine methylation on DNA binding specificities of human transcription factors

Yimeng Yin, Ekaterina Morgunova, Arttu Jolma, Eevi Kaasinen, Biswajyoti Sahu, Syed Khund-Sayeed, Pratyush K. Das, Teemu Kivioja, Kashyap Dave, Fan Zhong, Kazuhiro R. Nitta, Minna Taipale, Alexander Popov, Paul A. Ginno, Silvia Domcke, Jian Yan, Dirk Schübeler, Charles Vinson, Jussi Taipale

Science. Author manuscript; available in PMC 2021 Mar 30.

Published in final edited form as: Science. 2017 May 5; 356(6337): eaaj2239. doi: 10.1126/science.aaj2239

PMCID:: PMC8009048

Abstract Article PDF–2.6M

Select item 58066085.

Increased copy number of the DLX4 homeobox gene in breast axillary lymph node metastasis

Clarissa Torresan, Márcia M.C. Oliveira, Silma R.F. Pereira, Enilze M.S.F. Ribeiro, Catalin Marian, Yuriy Gusev, Rubens S. Lima, Cicero A. Urban, Patricia E. Berg, Bassem R. Haddad, Iglenir J. Cavalli, Luciane R. Cavalli

Cancer Genet. Author manuscript; available in PMC 2018 Feb 9.

Published in final edited form as: Cancer Genet. 2014 May; 207(5): 177–187. Published online 2014 May 2. doi: 10.1016/j.cancergen.2014.04.007

PMCID:: PMC5806608

Abstract Article PDF–630K

Select item 58066076.

Amplification of the BP1 homeobox gene in breast cancer

Luciane R. Cavalli, Yan-Gao Man, Arnold M. Schwartz, Janice D. Rone, Ying Zhang, Cicero A. Urban, Rubens S. Lima, Bassem R. Haddad, Patricia E. Berg

Cancer Genet Cytogenet. Author manuscript; available in PMC 2018 Feb 9.

Published in final edited form as: Cancer Genet Cytogenet. 2008 Nov; 187(1): 19–24. doi: 10.1016/j.cancergencyto.2008.07.004

PMCID:: PMC5806607

Abstract Article PDF–475K

Select item 55316117.

Architecture of the human interactome defines protein communities and disease networks

Edward L. Huttlin, Raphael J. Bruckner, Joao A. Paulo, Joe R. Cannon, Lily Ting, Kurt Baltier, Greg Colby, Fana Gebreab, Melanie P. Gygi, Hannah Parzen, John Szpyt, Stanley Tam, Gabriela Zarraga, Laura Pontano-Vaites, Sharan Swarup, Anne E. White, Devin K. Schweppe, Ramin Rad, Brian K. Erickson, Robert A. Obar, K.G. Guruharsha, Kejie Li, Spyros Artavanis-Tsakonas, Steven P. Gygi, J. Wade Harper

Nature. Author manuscript; available in PMC 2017 Nov 17.

Published in final edited form as: Nature. 2017 May 25; 545(7655): 505–509. Published online 2017 May 17. doi: 10.1038/nature22366

PMCID:: PMC5531611

Abstract Article PDF–2.7M

Select item 52881798.

Beta protein 1 homeoprotein induces cell growth and estrogen-independent tumorigenesis by binding to the estrogen receptor in breast cancer

Sidney W. Fu, Saurabh P. Kirolikar, Erika Ginsburg, Xiaohui Tan, Arnold Schwartz, Samuel J. Simmens, Yan-Gao Man, Joseph J. Pinzone, Christine Teal, Sanket Awate, Barbara K. Vonderhaar, Patricia E. Berg

Oncotarget. 2016 Aug 16; 7(33): 53204–53216. Published online 2016 Jul 16. doi: 10.18632/oncotarget.10633

PMCID:: PMC5288179

Abstract Article PDF–5.4M

Select item 45410439.

The homeobox gene DLX4 regulates erythro-megakaryocytic differentiation by stimulating IL-1β and NF-κB signaling

Bon Q. Trinh, Nicolas Barengo, Sang Bae Kim, Ju-Seog Lee, Patrick A. Zweidler-McKay, Honami Naora

J Cell Sci. 2015 Aug 15; 128(16): 3055–3067. doi: 10.1242/jcs.168187

PMCID:: PMC4541043

Abstract Article

Select item 453013510.

The Homeoprotein DLX4 Stimulates NF-κB Activation and CD44-Mediated Tumor–Mesothelial Cell Interactions in Ovarian Cancer

Dhwani Haria, Bon Quy Trinh, Song Yi Ko, Nicolas Barengo, Jinsong Liu, Honami Naora

Am J Pathol. 2015 Aug; 185(8): 2298–2308. doi: 10.1016/j.ajpath.2015.04.004

PMCID:: PMC4530135

Abstract Article PDF–2.6M

Select item 449239711.

DLX4 is associated with orofacial clefting and abnormal jaw development

Di Wu, Shyamali Mandal, Alex Choi, August Anderson, Michaela Prochazkova, Hazel Perry, Vera L. Gil-Da-Silva-Lopes, Richard Lao, Eunice Wan, Paul Ling-Fung Tang, Pui-yan Kwok, Ophir Klein, Bian Zhuan, Anne M. Slavotinek

Hum Mol Genet. 2015 Aug 1; 24(15): 4340–4352. Published online 2015 May 7. doi: 10.1093/hmg/ddv167

PMCID:: PMC4492397

Abstract Article PDF–660K

Select item 442798512.

The homeoprotein DLX4 controls inducible nitric oxide synthase-mediated angiogenesis in ovarian cancer

Bon Trinh, Song Yi Ko, Dhwani Haria, Nicolas Barengo, Honami Naora

Mol Cancer. 2015; 14: 97. Published online 2015 Apr 30. doi: 10.1186/s12943-015-0368-3

PMCID:: PMC4427985

Abstract Article PDF–3.3M

Select item 425518613.

The homeobox gene DLX4 promotes generation of human induced pluripotent stem cells

Naritaka Tamaoki, Kazutoshi Takahashi, Hitomi Aoki, Kazuki Iida, Tomoko Kawaguchi, Daijirou Hatakeyama, Masatoshi Inden, Naoyuki Chosa, Akira Ishisaki, Takahiro Kunisada, Toshiyuki Shibata, Naoki Goshima, Shinya Yamanaka, Ken-ichi Tezuka

Sci Rep. 2014; 4: 7283. Published online 2014 Dec 4. doi: 10.1038/srep07283

PMCID:: PMC4255186

Abstract Article PDF–766K

Select item 347768714.

DLX4 Upregulates TWIST and Enhances Tumor Migration, Invasion and Metastasis

Lianmei Zhang, Manman Yang, Lin Gan, Tao He, Xiuli Xiao, M. David Stewart, Xiaoyan Liu, Luquan Yang, Tiandan Zhang, Yongxiang Zhao, Junjiang Fu

Int J Biol Sci. 2012; 8(8): 1178–1187. Published online 2012 Oct 13. doi: 10.7150/ijbs.4458

PMCID:: PMC3477687

Abstract Article PDF–1.1M

Select item 326170815.

Toward an understanding of the protein interaction network of the human liver

Jian Wang, Keke Huo, Lixin Ma, Liujun Tang, Dong Li, Xiaobi Huang, Yanzhi Yuan, Chunhua Li, Wei Wang, Wei Guan, Hui Chen, Chaozhi Jin, Junchen Wei, Wanqiao Zhang, Yongsheng Yang, Qiongming Liu, Ying Zhou, Cuili Zhang, Zhihao Wu, Wangxiang Xu, Ying Zhang, Tao Liu, Donghui Yu, Yaping Zhang, Liang Chen, Dewu Zhu, Xing Zhong, Lixin Kang, Xiang Gan, Xiaolan Yu, Qi Ma, Jing Yan, Li Zhou, Zhongyang Liu, Yunping Zhu, Tao Zhou, Fuchu He, Xiaoming Yang

Mol Syst Biol. 2011; 7: 536. Published online 2011 Oct 11. doi: 10.1038/msb.2011.67

Correction in:: Mol Syst Biol. 2017 Dec; 13(12): 965.

PMCID:: PMC3261708

Abstract Article PDF–2.0M

Select item 317805916.

Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium

Pascale Gaudet, Michael S. Livstone, Suzanna E. Lewis, Paul D. Thomas

Brief Bioinform. 2011 Sep; 12(5): 449–462. Published online 2011 Aug 27. doi: 10.1093/bib/bbr042

PMCID:: PMC3178059

Abstract Article PDF–1.0M

Select item 311696417.

Homeodomain protein DLX4 counteracts key transcriptional control mechanisms of the TGF-ß cytostatic program and blocks the anti-proliferative effect of TGF-ß

Bon Quy Trinh, Nicolas Barengo, Honami Naora

Oncogene. Author manuscript; available in PMC 2011 Dec 16.

Published in final edited form as: Oncogene. 2011 Jun 16; 30(24): 2718–2729. Published online 2011 Feb 7. doi: 10.1038/onc.2011.4

PMCID:: PMC3116964

Abstract Article PDF–945K

Select item 290133618.

Maternal Genes and Facial Clefts in Offspring: A Comprehensive Search for Genetic Associations in Two Population-Based Cleft Studies from Scandinavia

Astanand Jugessur, Min Shi, Håkon Kristian Gjessing, Rolv Terje Lie, Allen James Wilcox, Clarice Ring Weinberg, Kaare Christensen, Abee Lowman Boyles, Sandra Daack-Hirsch, Truc Trung Nguyen, Lene Christiansen, Andrew Carl Lidral, Jeffrey Clark Murray

PLoS One. 2010; 5(7): e11493. Published online 2010 Jul 9. doi: 10.1371/journal.pone.0011493

PMCID:: PMC2901336

Abstract Article PDF–778K

Select item 273495419.

Candidate Gene/Loci Studies in Cleft Lip/Palate and Dental Anomalies Finds Novel Susceptibility Genes for Clefts

Alexandre R. Vieira, Toby G. McHenry, Sandra Daack-Hirsch, Jeffrey C. Murray, Mary L. Marazita

Genet Med. Author manuscript; available in PMC 2009 Aug 30.

Published in final edited form as: Genet Med. 2008 Sep; 10(9): 668–674. doi: 10.1097/GIM.0b013e3181833793

PMCID:: PMC2734954

Abstract Article PDF–50K

Select item 163644620.

BP1 is a negative modulator of definitive erythropoiesis

Marthe-Sandrine Eiymo Mwa Mpollo, Mélissa Beaudoin, Patricia E. Berg, Hugues Beauchemin, Vivette D'Agati, Marie Trudel

Nucleic Acids Res. 2006 Oct; 34(18): 5232–5237. Published online 2006 Sep 26. doi: 10.1093/nar/gkl680

PMCID:: PMC1636446

Abstract Article PDF–507K

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