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Items: 1 to 20 of 22

1.
Structure of Escherichia coli AlkA in Complex with Undamaged DNA
Brian R. Bowman, Seongmin Lee, Shuyu Wang, Gregory L. Verdine
J Biol Chem. 2010 Nov 12; 285(46): 35783–35791. Published online 2010 Sep 15. doi: 10.1074/jbc.M110.155663
PMCID:
PMC2975202
AbstractArticlePDF–1.8M
2.
Synthesis and Structure of Duplex DNA Containing the Genotoxic Nucleobase Lesion N7-Methylguanine
Seongmin Lee, Brian R. Bowman, Yoshihito Ueno, Shuyu Wang, Gregory L. Verdine
J Am Chem Soc. Author manuscript; available in PMC 2009 Oct 26.
Published in final edited form as: J Am Chem Soc. 2008 Sep 3; 130(35): 11570–11571. Published online 2008 Aug 8. doi: 10.1021/ja8025328
PMCID:
PMC2767213
ArticlePDF–838K
3.
Structure of the E. coli DNA Glycosylase AlkA Bound to the Ends of Duplex DNA: A System for the Structure Determination of Lesion-Containing DNA
Brian R. Bowman, Seongmin Lee, Shuyu Wang, Gregory L. Verdine
Structure. Author manuscript; available in PMC 2009 Oct 26.
Published in final edited form as: Structure. 2008 Aug 6; 16(8): 1166–1174. doi: 10.1016/j.str.2008.04.012
PMCID:
PMC2767207
AbstractArticlePDF–2.9M
4.
Systems based mapping demonstrates that recovery from alkylation damage requires DNA repair, RNA processing, and translation associated networks
John P. Rooney, Ajish D. George, Ashish Patil, Ulrike Begley, Erin Bessette, Maria R. Zappala, Xin Huang, Douglas A. Conklin, Richard P. Cunningham, Thomas J. Begley
Genomics. Author manuscript; available in PMC 2010 Jan 1.
Published in final edited form as: Genomics. 2009 Jan; 93(1): 42–51. Published online 2008 Oct 16. doi: 10.1016/j.ygeno.2008.09.001
PMCID:
PMC2633870
AbstractArticlePDF–1.9M
5.
Expression Profiling of All Protein-Coding Genes in Wild-Type and Three DNA Repair-Deficient Substrains of Escherichia coli K-equation M1
Camilla Salmelin, Juhani Vilpo
Comp Funct Genomics. 2002 Feb; 3(1): 3–13. doi: 10.1002/cfg.140
PMCID:
PMC2447237
SummaryPDF–152K
6.
Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110
Koji Hayashi, Naoki Morooka, Yoshihiro Yamamoto, Katsutoshi Fujita, Katsumi Isono, Sunju Choi, Eiichi Ohtsubo, Tomoya Baba, Barry L Wanner, Hirotada Mori, Takashi Horiuchi
Mol Syst Biol. 2006; 2: 2006.0007. Published online 2006 Feb 21. doi: 10.1038/msb4100049
PMCID:
PMC1681481
AbstractArticlePDF–141K
7.
Homologous recombination prevents methylation-induced toxicity in Escherichia coli
Anetta Nowosielska, Stephen A. Smith, Bevin P. Engelward, M. G. Marinus
Nucleic Acids Res. 2006; 34(8): 2258–2268. Published online 2006 May 2. doi: 10.1093/nar/gkl222
PMCID:
PMC1456334
AbstractArticlePDF–389K
8.
Escherichia coli K-12: a cooperatively developed annotation snapshot—2005
Monica Riley, Takashi Abe, Martha B. Arnaud, Mary K.B. Berlyn, Frederick R. Blattner, Roy R. Chaudhuri, Jeremy D. Glasner, Takashi Horiuchi, Ingrid M. Keseler, Takehide Kosuge, Hirotada Mori, Nicole T. Perna, Guy Plunkett, III, Kenneth E. Rudd, Margrethe H. Serres, Gavin H. Thomas, Nicholas R. Thomson, David Wishart, Barry L. Wanner
Nucleic Acids Res. 2006; 34(1): 1–9. Published online 2006 Jan 5. doi: 10.1093/nar/gkj405
PMCID:
PMC1325200
AbstractArticlePDF–204K
9.
ESCHERICHIA COLI Gene Induction by Alkylation Treatment
Michael R. Volkert, Dinh C. Nguyen, K. Christopher Beard
Genetics. 1986 Jan; 112(1): 11–26. doi: 10.1093/genetics/112.1.11
PMCID:
PMC1202685
SummaryPDF–812K
10.
Regulatory mechanisms for induction of synthesis of repair enzymes in response to alkylating agents: ada protein acts as a transcriptional regulator.
Y Nakabeppu, M Sekiguchi
Proc Natl Acad Sci U S A. 1986 Sep; 83(17): 6297–6301. doi: 10.1073/pnas.83.17.6297
PMCID:
PMC386490
SummaryPage BrowsePDF–1.3M
11.
Induction of specific Escherichia coli genes by sublethal treatments with alkylating agents.
M R Volkert, D C Nguyen
Proc Natl Acad Sci U S A. 1984 Jul; 81(13): 4110–4114. doi: 10.1073/pnas.81.13.4110
PMCID:
PMC345378
SummaryPage BrowsePDF–1.0M
12.
Escherichia coli, Saccharomyces cerevisiae, rat and human 3-methyladenine DNA glycosylases repair 1,N6-ethenoadenine when present in DNA.
M Saparbaev, K Kleibl, J Laval
Nucleic Acids Res. 1995 Sep 25; 23(18): 3750–3755. doi: 10.1093/nar/23.18.3750
PMCID:
PMC307275
SummaryPage BrowsePDF–1.1M
13.
Amplified expression of the tag+ and alkA+ genes in Escherichia coli: identification of gene products and effects on alkylation resistance.
I Kaasen, G Evensen, E Seeberg
J Bacteriol. 1986 Nov; 168(2): 642–647. doi: 10.1128/jb.168.2.642-647.1986
PMCID:
PMC213529
SummaryPage BrowsePDF–1.3M
14.
Novel repair activities of AlkA (3-methyladenine DNA glycosylase II) and endonuclease VIII for xanthine and oxanine, guanine lesions induced by nitric oxide and nitrous acid
Hiroaki Terato, Aya Masaoka, Kenjiro Asagoshi, Akiko Honsho, Yoshihiko Ohyama, Toshinori Suzuki, Masaki Yamada, Keisuke Makino, Kazuo Yamamoto, Hiroshi Ide
Nucleic Acids Res. 2002 Nov 15; 30(22): 4975–4984. doi: 10.1093/nar/gkf630
PMCID:
PMC137176
AbstractArticlePDF–218K
15.
Nitric Oxide-Induced Homologous Recombination in Escherichia coli Is Promoted by DNA Glycosylases
Erik J. Spek, Laurel N. Vuong, Tetsuya Matsuguchi, Martin G. Marinus, Bevin P. Engelward
J Bacteriol. 2002 Jul; 184(13): 3501–3507. doi: 10.1128/JB.184.13.3501-3507.2002
PMCID:
PMC135131
AbstractArticlePDF–141K
16.
Interactions of the human, rat, Saccharomyces cerevisiae and Escherichia coli 3-methyladenine-DNA glycosylases with DNA containing dIMP residues
Murat Saparbaev, Jean-Claude Mani, Jacques Laval
Nucleic Acids Res. 2000 Mar 15; 28(6): 1332–1339. doi: 10.1093/nar/28.6.1332
PMCID:
PMC111053
AbstractArticlePDF–190K
17.
Recombinational Repair Is Critical for Survival of Escherichia coli Exposed to Nitric Oxide
Erik J. Spek, Teresa L. Wright, Molly S. Stitt, Nazbeh R. Taghizadeh, Steven R. Tannenbaum, Martin G. Marinus, Bevin P. Engelward
J Bacteriol. 2001 Jan; 183(1): 131–138. doi: 10.1128/JB.183.1.131-138.2001
PMCID:
PMC94858
AbstractArticlePDF–110K
18.
Expression of the Escherichia coli Ada Regulon in Stationary Phase: Evidence for rpoS-Dependent Negative Regulation of alkA Transcription
Paolo Landini, Stephen J. W. Busby
J Bacteriol. 1999 Nov; 181(21): 6836–6839. doi: 10.1128/jb.181.21.6836-6839.1999
PMCID:
PMC94152
AbstractArticlePDF–184K
19.
The Escherichia coli Ada Protein Can Interact with Two Distinct Determinants in the ς70 Subunit of RNA Polymerase According to Promoter Architecture: Identification of the Target of Ada Activation at the alkA Promoter
Paolo Landini, Stephen J. W. Busby
J Bacteriol. 1999 Mar; 181(5): 1524–1529. doi: 10.1128/jb.181.5.1524-1529.1999
PMCID:
PMC93542
AbstractArticlePDF–1.9M
20.
A region of the Ada DNA-repair protein required for the activation of ada transcription is not necessary for activation of alkA.
D E Shevell, G C Walker
Proc Natl Acad Sci U S A. 1991 Oct 15; 88(20): 9001–9005. doi: 10.1073/pnas.88.20.9001
PMCID:
PMC52639
SummaryPage BrowsePDF–1.2M

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