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Select item 111094831.

K48- and K63-linked ubiquitin chain interactome reveals branch- and length-specific ubiquitin interactors

Anita Waltho, Oliver Popp, Christopher Lenz, Lukas Pluska, Mahil Lambert, Volker Dötsch, Philipp Mertins, Thomas Sommer

Life Sci Alliance. 2024 Aug; 7(8): e202402740. Published online 2024 May 21. doi: 10.26508/lsa.202402740

PMCID:: PMC11109483

Abstract Article PDF–2.9M

Select item 108724772.

Protein interaction network revealed by quantitative proteomic analysis links TFIIB to multiple aspects of the transcription cycle

Michael J. O’Brien, Athar Ansari

Biochim Biophys Acta Proteins Proteom. Author manuscript; available in PMC 2024 Feb 16.

Published in final edited form as: Biochim Biophys Acta Proteins Proteom. 2024 Jan 1; 1872(1): 140968. Published online 2023 Oct 19. doi: 10.1016/j.bbapap.2023.140968

PMCID:: PMC10872477

Abstract Article PDF–1.7M

Select item 108538033.

Spatial regulation of DNA damage tolerance protein Rad5 interconnects genome stability maintenance and proteostasis networks

Carl P Lehmann, Paula González-Fernández, José Antonio Tercero

Nucleic Acids Res. 2024 Feb 9; 52(3): 1156–1172. Published online 2023 Dec 6. doi: 10.1093/nar/gkad1176

PMCID:: PMC10853803

Abstract Article PDF–3.5M

Select item 107001384.

The social and structural architecture of the yeast protein interactome

André C. Michaelis, Andreas-David Brunner, Maximilian Zwiebel, Florian Meier, Maximilian T. Strauss, Isabell Bludau, Matthias Mann

Nature. 2023; 624(7990): 192–200. Published online 2023 Nov 15. doi: 10.1038/s41586-023-06739-5

PMCID:: PMC10700138

Abstract Article PDF–20M

Select item 104802145.

The COMPASS subunit Spp1 protects nascent DNA at the Tus/Ter replication fork barrier by limiting DNA availability to nucleases

Nagham Ghaddar, Yves Corda, Pierre Luciano, Martina Galli, Ylli Doksani, Vincent Géli

Nat Commun. 2023; 14: 5430. Published online 2023 Sep 5. doi: 10.1038/s41467-023-41100-4

PMCID:: PMC10480214

Abstract Article PDF–2.4M

Select item 103996096.

Helicase activities of Rad5 and Rrm3 genetically interact in the prevention of recombinogenic DNA lesions in Saccharomyces cerevisiae

Julius Muellner, Kristina Hildegard Schmidt

DNA Repair (Amst) Author manuscript; available in PMC 2024 Jun 1.

Published in final edited form as: DNA Repair (Amst). 2023 Jun; 126: 103488. Published online 2023 Mar 30. doi: 10.1016/j.dnarep.2023.103488

PMCID:: PMC10399609

Abstract Article PDF–1.0M

Select item 101277467.

Genetic Dissection of Budding Yeast PCNA Mutations Responsible for the Regulated Recruitment of Srs2 Helicase

Li Fan, Wenqing Zhang, Josephine Rybchuk, Yu Luo, Wei Xiao

mBio. 2023 Mar-Apr; 14(2): e00315-23. Published online 2023 Mar 2. doi: 10.1128/mbio.00315-23

PMCID:: PMC10127746

Abstract Article PDF–3.9M

Select item 99151038.

Fork-remodeling helicase Rad5 preferentially reverses replication forks with gaps in the leading strand

Justin A. Ling, Melissa S. Gildenberg, Masayoshi Honda, Christine M. Kondratick, Maria Spies, M. Todd Washington

J Mol Biol. Author manuscript; available in PMC 2024 Feb 28.

Published in final edited form as: J Mol Biol. 2023 Feb 28; 435(4): 167946. Published online 2023 Jan 6. doi: 10.1016/j.jmb.2023.167946

PMCID:: PMC9915103

Abstract Article PDF–1.1M

Select item 98363489.

A synthetic genetic array screen for interactions with the RNA helicase DED1 during cell stress in budding yeast

Sara B Carey, Hannah M List, Ashwin Siby, Paolo Guerra, Timothy A Bolger

G3 (Bethesda) 2023 Jan; 13(1): jkac296. Published online 2022 Nov 21. doi: 10.1093/g3journal/jkac296

PMCID:: PMC9836348

Abstract Article PDF–857K

Select item 924339610.

Rad5 and Its Human Homologs, HLTF and SHPRH, Are Novel Interactors of Mismatch Repair

Anna K. Miller, Guogen Mao, Breanna G. Knicely, Hannah G. Daniels, Christine Rahal, Christopher D. Putnam, Richard D. Kolodner, Eva M. Goellner

Front Cell Dev Biol. 2022; 10: 843121. Published online 2022 Jun 16. doi: 10.3389/fcell.2022.843121

PMCID:: PMC9243396

Abstract Article PDF–3.4M

Select item 920981111.

New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources

Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry

Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224

PMCID:: PMC9209811

Abstract Article PDF–818K

Select item 895657812.

The inner side of yeast PCNA contributes to genome stability by mediating interactions with Rad18 and the replicative DNA polymerase δ

Robert Toth, Miklos Halmai, Zsuzsanna Gyorfy, Eva Balint, Ildiko Unk

Sci Rep. 2022; 12: 5163. Published online 2022 Mar 25. doi: 10.1038/s41598-022-09208-7

PMCID:: PMC8956578

Abstract Article PDF–4.2M

Select item 875982113.

The Zn-finger of Saccharomyces cerevisiae Rad18 and its adjacent region mediate interaction with Rad5

Orsolya Frittmann, Vamsi K Gali, Miklos Halmai, Robert Toth, Zsuzsanna Gyorfy, Eva Balint, Ildiko Unk

G3 (Bethesda) 2021 Apr; 11(4): jkab041. Published online 2021 Feb 11. doi: 10.1093/g3journal/jkab041

PMCID:: PMC8759821

Abstract Article PDF–895K

Select item 874898814.

Mechanism for inverted-repeat recombination induced by a replication fork barrier

Léa Marie, Lorraine S. Symington

Nat Commun. 2022; 13: 32. Published online 2022 Jan 10. doi: 10.1038/s41467-021-27443-w

PMCID:: PMC8748988

Abstract Article PDF–24M

Select item 857106315.

Systems-level effects of allosteric perturbations to a model molecular switch

Tina Perica, Christopher J. P. Mathy, Jiewei Xu, Gwendolyn M. Jang, Yang Zhang, Robyn Kaake, Noah Ollikainen, Hannes Braberg, Danielle L. Swaney, David G. Lambright, Mark J. S. Kelly, Nevan J. Krogan, Tanja Kortemme

Nature. Author manuscript; available in PMC 2022 May 1.

Published in final edited form as: Nature. 2021 Nov; 599(7883): 152–157. Published online 2021 Oct 13. doi: 10.1038/s41586-021-03982-6

PMCID:: PMC8571063

Abstract Article PDF–2.7M

Select item 854891616.

Cnm1 mediates nucleus–mitochondria contact site formation in response to phospholipid levels

Michal Eisenberg-Bord, Naama Zung, Javier Collado, Layla Drwesh, Emma J. Fenech, Amir Fadel, Nili Dezorella, Yury S. Bykov, Doron Rapaport, Ruben Fernandez-Busnadiego, Maya Schuldiner

J Cell Biol. 2021 Nov 1; 220(11): e202104100. Published online 2021 Oct 25. doi: 10.1083/jcb.202104100

PMCID:: PMC8548916

Abstract Article PDF–6.5M

Select item 838067417.

A role for Rad5 in ribonucleoside monophosphate (rNMP) tolerance

Menattallah Elserafy, Iman El-Shiekh, Dalia Fleifel, Reham Atteya, Abdelrahman AlOkda, Mohamed M Abdrabbou, Mostafa Nasr, Sherif F El-Khamisy

Life Sci Alliance. 2021 Oct; 4(10): e202000966. Published online 2021 Aug 18. doi: 10.26508/lsa.202000966

PMCID:: PMC8380674

Abstract Article PDF–3.6M

Select item 771875118.

Comprehensive Synthetic Genetic Array Analysis of Alleles That Interact with Mutation of the Saccharomyces cerevisiae RecQ Helicases Hrq1 and Sgs1

Elsbeth Sanders, Phoebe A. Nguyen, Cody M. Rogers, Matthew L. Bochman

G3 (Bethesda) 2020 Dec; 10(12): 4359–4368. Published online 2020 Oct 28. doi: 10.1534/g3.120.401709

PMCID:: PMC7718751

Abstract Article PDF–1.2M

Select item 759915419.

Prevention of unwanted recombination at damaged replication forks

Carl P. Lehmann, Alberto Jiménez-Martín, Dana Branzei, José Antonio Tercero

Curr Genet. 2020; 66(6): 1045–1051. Published online 2020 Jul 15. doi: 10.1007/s00294-020-01095-7

PMCID:: PMC7599154

Abstract Article PDF–893K

Select item 750254520.

Genetic characterization of three distinct mechanisms supporting RNA-driven DNA repair and modification reveals major role of DNA polymerase ζ

Chance Meers, Havva Keskin, Gabor Banyai, Olga Mazina, Taehwan Yang, Alli L. Gombolay, Kuntal Mukherjee, Efiyenia I. Kaparos, Gary Newnam, Alexander Mazin, Francesca Storici

Mol Cell. Author manuscript; available in PMC 2021 Sep 17.

Published in final edited form as: Mol Cell. 2020 Sep 17; 79(6): 1037–1050.e5. Published online 2020 Sep 2. doi: 10.1016/j.molcel.2020.08.011