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Select item 108724771.

Protein interaction network revealed by quantitative proteomic analysis links TFIIB to multiple aspects of the transcription cycle

Michael J. O’Brien, Athar Ansari

Biochim Biophys Acta Proteins Proteom. Author manuscript; available in PMC 2024 Feb 16.

Published in final edited form as: Biochim Biophys Acta Proteins Proteom. 2024 Jan 1; 1872(1): 140968. Published online 2023 Oct 19. doi: 10.1016/j.bbapap.2023.140968

PMCID:: PMC10872477

Abstract Article PDF–1.7M

Select item 107001382.

The social and structural architecture of the yeast protein interactome

André C. Michaelis, Andreas-David Brunner, Maximilian Zwiebel, Florian Meier, Maximilian T. Strauss, Isabell Bludau, Matthias Mann

Nature. 2023; 624(7990): 192–200. Published online 2023 Nov 15. doi: 10.1038/s41586-023-06739-5

PMCID:: PMC10700138

Abstract Article PDF–20M

Select item 102350863.

Rio1 downregulates centromeric RNA levels to promote the timely assembly of structurally fit kinetochores

Ksenia Smurova, Michela Damizia, Carmela Irene, Stefania Stancari, Giovanna Berto, Giulia Perticari, Maria Giuseppina Iacovella, Ilaria D’Ambrosio, Maria Giubettini, Réginald Philippe, Chiara Baggio, Elisabetta Callegaro, Andrea Casagranda, Alessandro Corsini, Vincenzo Gentile Polese, Anna Ricci, Erik Dassi, Peter De Wulf

Nat Commun. 2023; 14: 3172. Published online 2023 Jun 1. doi: 10.1038/s41467-023-38920-9

PMCID:: PMC10235086

Abstract Article PDF–2.6M

Select item 102333684.

A systematic proximity ligation approach to studying protein‐substrate specificity identifies the substrate spectrum of the Ssh1 translocon

Nir Cohen, Naama Aviram, Maya Schuldiner

EMBO J. 2023 Jun; 42(11): e113385. Published online 2023 Apr 19. doi: 10.15252/embj.2022113385

PMCID:: PMC10233368

Abstract Article PDF–1.2M

Select item 98363485.

A synthetic genetic array screen for interactions with the RNA helicase DED1 during cell stress in budding yeast

Sara B Carey, Hannah M List, Ashwin Siby, Paolo Guerra, Timothy A Bolger

G3 (Bethesda) 2023 Jan; 13(1): jkac296. Published online 2022 Nov 21. doi: 10.1093/g3journal/jkac296

PMCID:: PMC9836348

Abstract Article PDF–857K

Select item 96309866.

A balancing act: interactions within NuA4/TIP60 regulate picNuA4 function in Saccharomyces cerevisiae and humans

Phoebe Y T Lu, Alyssa C Kirlin, Maria J Aristizabal, Hilary T Brewis, Nancy Lévesque, Dheva T Setiaputra, Nikita Avvakumov, Joris J Benschop, Marian Groot Koerkamp, Frank C P Holstege, Nevan J Krogan, Calvin K Yip, Jacques Côté, Michael S Kobor

Genetics. 2022 Nov; 222(3): iyac136. Published online 2022 Sep 6. doi: 10.1093/genetics/iyac136

PMCID:: PMC9630986

Abstract Article PDF–2.2M

Select item 92098117.

New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources

Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry

Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224

PMCID:: PMC9209811

Abstract Article PDF–818K

Select item 84967108.

Membrane dynamics and protein targets of lipid droplet microautophagy during ER stress-induced proteostasis in the budding yeast, Saccharomyces cerevisiae

Enrique J. Garcia, Pin-Chao Liao, Gary Tan, Jason D. Vevea, Cierra N. Sing, Catherine A. Tsang, J. Michael McCaffery, Istvan R. Boldogh, Liza A. Pon

Autophagy. 2021; 17(9): 2363–2383. Published online 2020 Oct 6. doi: 10.1080/15548627.2020.1826691

PMCID:: PMC8496710

Abstract Article PDF–11M

Select item 79394359.

HIV-1 Gag release from yeast reveals ESCRT interaction with the Gag N-terminal protein region

Birgit Meusser, Bettina Purfuerst, Friedrich C. Luft

J Biol Chem. 2020 Dec 25; 295(52): 17950–17972. Published online 2021 Jan 13. doi: 10.1074/jbc.RA120.014710

PMCID:: PMC7939435

Abstract Article PDF–5.5M

Select item 772147510.

A Selective Autophagy Pathway for Phase-Separated Endocytic Protein Deposits

Florian Wilfling, Chia-Wei Lee, Philipp S. Erdmann, Yumei Zheng, Dawafuti Sherpa, Stefan Jentsch, Boris Pfander, Brenda A. Schulman, Wolfgang Baumeister

Mol Cell. 2020 Dec 3; 80(5): 764–778.e7. doi: 10.1016/j.molcel.2020.10.030

PMCID:: PMC7721475

Abstract Article

Select item 761500111.

The chaperone-binding activity of the mitochondrial surface receptor Tom70 protects the cytosol against mitoprotein-induced stress

Sandra Backes, Yury S. Bykov, Tamara Flohr, Markus Räschle, Jialin Zhou, Svenja Lenhard, Lena Krämer, Timo Mühlhaus, Chen Bibi, Cosimo Jann, Justin D. Smith, Lars M. Steinmetz, Doron Rapaport, Zuzana Storchová, Maya Schuldiner, Felix Boos, Johannes M. Herrmann

Cell Rep. Author manuscript; available in PMC 2023 Aug 31.

Published in final edited form as: Cell Rep. 2021 Apr 6; 35(1): 108936. doi: 10.1016/j.celrep.2021.108936

PMCID:: PMC7615001

Abstract Article PDF–3.4M

Select item 735314912.

ESCRT-III and ER–PM contacts maintain lipid homeostasis

Jeff R. Jorgensen, Reika Tei, Jeremy M. Baskin, Agnès H. Michel, Benoît Kornmann, Scott D. Emr

Mol Biol Cell. 2020 Jun 1; 31(12): 1302–1313. doi: 10.1091/mbc.E20-01-0061

PMCID:: PMC7353149

Abstract Article PDF–2.9M

Select item 696044313.

ESCRT machinery mediates selective microautophagy of endoplasmic reticulum in yeast

Jasmin A Schäfer, Julia P Schessner, Peter W Bircham, Takuma Tsuji, Charlotta Funaya, Oliver Pajonk, Katharina Schaeff, Giulia Ruffini, Dimitrios Papagiannidis, Michael Knop, Toyoshi Fujimoto, Sebastian Schuck

EMBO J. 2020 Jan 15; 39(2): e102586. Published online 2019 Dec 5. doi: 10.15252/embj.2019102586

PMCID:: PMC6960443

Abstract Article PDF–4.0M

Select item 668899414.

Extracellular vesicles secreted by Saccharomyces cerevisiae are involved in cell wall remodelling

Kening Zhao, Mark Bleackley, David Chisanga, Lahiru Gangoda, Pamali Fonseka, Michael Liem, Hina Kalra, Haidar Al Saffar, Shivakumar Keerthikumar, Ching-Seng Ang, Christopher G. Adda, Lanzhou Jiang, Kuok Yap, Ivan K. Poon, Peter Lock, Vincent Bulone, Marilyn Anderson, Suresh Mathivanan

Commun Biol. 2019; 2: 305. Published online 2019 Aug 9. doi: 10.1038/s42003-019-0538-8

PMCID:: PMC6688994

Abstract Article PDF–1.7M

Select item 615364315.

Cis and trans interactions between genes encoding PAF1 complex and ESCRT machinery components in yeast

Joana Rodrigues, David Lydall

Curr Genet. 2018; 64(5): 1105–1116. Published online 2018 Mar 22. doi: 10.1007/s00294-018-0828-6

PMCID:: PMC6153643

Abstract Article PDF–4.3M

Select item 601409516.

The degradation pathway of a model misfolded protein is determined by aggregation propensity

Zhihao Sun, Jeffrey L. Brodsky

Mol Biol Cell. 2018 Jun 15; 29(12): 1422–1434. doi: 10.1091/mbc.E18-02-0117

PMCID:: PMC6014095

Abstract Article PDF–2.2M

Select item 589693317.

Cdc48 and ubiquilins confer selective anterograde protein sorting and entry into the multivesicular body in yeast

Rachel Kama, Galina Gabriely, Vydehi Kanneganti, Jeffrey E. Gerst

Mol Biol Cell. 2018 Apr 15; 29(8): 948–963. doi: 10.1091/mbc.E17-11-0652

PMCID:: PMC5896933

Abstract Article PDF–1.7M

Select item 580577118.

Accelerated invagination of vacuoles as a stress response in chronically heat-stressed yeasts

Ayane Ishii, Masahito Kawai, Haruka Noda, Hiroyuki Kato, Kohei Takeda, Kotomi Asakawa, Yoshinobu Ichikawa, Tomohiro Sasanami, Keiji Tanaka, Yoko Kimura

Sci Rep. 2018; 8: 2644. Published online 2018 Feb 8. doi: 10.1038/s41598-018-20781-8

PMCID:: PMC5805771

Abstract Article PDF–5.4M

Select item 576535919.

Genome-Wide Mapping of Decay Factor–mRNA Interactions in Yeast Identifies Nutrient-Responsive Transcripts as Targets of the Deadenylase Ccr4

Jason E. Miller, Liye Zhang, Haoyang Jiang, Yunfei Li, B. Franklin Pugh, Joseph C. Reese

G3 (Bethesda) 2018 Jan; 8(1): 315–330. Published online 2017 Nov 20. doi: 10.1534/g3.117.300415

PMCID:: PMC5765359

Abstract Article PDF–2.2M

Select item 570696320.

Ubiquitin turnover and endocytic trafficking in yeast are regulated by Ser57 phosphorylation of ubiquitin

Sora Lee, Jessica M Tumolo, Aaron C Ehlinger, Kristin K Jernigan, Susan J Qualls-Histed, Pi-Chiang Hsu, W Hayes McDonald, Walter J Chazin, Jason A MacGurn

eLife. 2017; 6: e29176. Published online 2017 Nov 13. doi: 10.7554/eLife.29176