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Items: 1 to 20 of 37

1.
N-terminal acetylation of Set1-COMPASS fine-tunes H3K4 methylation patterns
Hyeonju Woo, Junsoo Oh, Yong-Joon Cho, Goo Taeg Oh, Seon-Young Kim, Kisoon Dan, Dohyun Han, Jung-Shin Lee, TaeSoo Kim
Sci Adv. 2024 Jul 12; 10(28): eadl6280. Published online 2024 Jul 12. doi: 10.1126/sciadv.adl6280
PMCID:
PMC11244526
AbstractArticlePDF–10M
2.
Protein interaction network revealed by quantitative proteomic analysis links TFIIB to multiple aspects of the transcription cycle
Michael J. O’Brien, Athar Ansari
Biochim Biophys Acta Proteins Proteom. Author manuscript; available in PMC 2024 Feb 16.
Published in final edited form as: Biochim Biophys Acta Proteins Proteom. 2024 Jan 1; 1872(1): 140968. Published online 2023 Oct 19. doi: 10.1016/j.bbapap.2023.140968
PMCID:
PMC10872477
AbstractArticlePDF–1.7M
3.
The social and structural architecture of the yeast protein interactome
André C. Michaelis, Andreas-David Brunner, Maximilian Zwiebel, Florian Meier, Maximilian T. Strauss, Isabell Bludau, Matthias Mann
Nature. 2023; 624(7990): 192–200. Published online 2023 Nov 15. doi: 10.1038/s41586-023-06739-5
PMCID:
PMC10700138
AbstractArticlePDF–20M
4.
The GET pathway is a major bottleneck for maintaining proteostasis in Saccharomyces cerevisiae
Rebecca Josefson, Navinder Kumar, Xinxin Hao, Beidong Liu, Thomas Nyström
Sci Rep. 2023; 13: 9285. Published online 2023 Jun 7. doi: 10.1038/s41598-023-35666-8
PMCID:
PMC10247811
AbstractArticlePDF–8.1M
5.
A systematic proximity ligation approach to studying protein‐substrate specificity identifies the substrate spectrum of the Ssh1 translocon
Nir Cohen, Naama Aviram, Maya Schuldiner
EMBO J. 2023 Jun; 42(11): e113385. Published online 2023 Apr 19. doi: 10.15252/embj.2022113385
PMCID:
PMC10233368
AbstractArticlePDF–1.2M
6.
New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources
Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry
Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224
PMCID:
PMC9209811
AbstractArticlePDF–818K
7.
Exploring the Complexity of Protein-Level Dosage Compensation that Fine-Tunes Stoichiometry of Multiprotein Complexes
Koji Ishikawa, Akari Ishihara, Hisao Moriya
PLoS Genet. 2020 Oct; 16(10): e1009091. Published online 2020 Oct 28. doi: 10.1371/journal.pgen.1009091
PMCID:
PMC7652333
AbstractArticlePDF–3.2M
8.
Genes and lipids that impact uptake and assimilation of exogenous coenzyme Q in Saccharomyces cerevisiae
Lucía Fernández-del-Río, Miranda Kelly, Jaime Contreras, Michelle C. Bradley, Andrew M. James, Michael P. Murphy, Gregory S. Payne, Catherine F. Clarke
Free Radic Biol Med. Author manuscript; available in PMC 2021 Jul 19.
Published in final edited form as: Free Radic Biol Med. 2020 Jul 1; 154: 105–118. Published online 2020 May 6. doi: 10.1016/j.freeradbiomed.2020.04.029
PMCID:
PMC7611304
AbstractArticlePDF–2.0M
9.
Divergent architecture of the heterotrimeric NatC complex explains N-terminal acetylation of cognate substrates
Stephan Grunwald, Linus V. M. Hopf, Tobias Bock-Bierbaum, Ciara C. M. Lally, Christian M. T. Spahn, Oliver Daumke
Nat Commun. 2020; 11: 5506. Published online 2020 Nov 2. doi: 10.1038/s41467-020-19321-8
PMCID:
PMC7608589
AbstractArticlePDF–3.4M
10.
N-terminal protein acetylation by NatB modulates the levels of Nmnats, the NAD+ biosynthetic enzymes in Saccharomyces cerevisiae
Trevor Croft, Padmaja Venkatakrishnan, Christol James Theoga Raj, Benjamin Groth, Timothy Cater, Michelle R. Salemi, Brett Phinney, Su-Ju Lin
J Biol Chem. 2020 May 22; 295(21): 7362–7375. Published online 2020 Apr 16. doi: 10.1074/jbc.RA119.011667
PMCID:
PMC7247314
AbstractArticlePDF–1.6M
11.
Formyl-methionine as an N-degron of a eukaryotic N-end rule pathway
Jeong-Mok Kim, Ok-Hee Seok, Shinyeong Ju, Ji-Eun Heo, Jeonghun Yeom, Da-Som Kim, Joo-Yeon Yoo, Alexander Varshavsky, Cheolju Lee, Cheol-Sang Hwang
Science. Author manuscript; available in PMC 2019 Jun 6.
Published in final edited form as: Science. 2018 Nov 30; 362(6418): eaat0174. Published online 2018 Nov 8. doi: 10.1126/science.aat0174
PMCID:
PMC6551516
AbstractArticlePDF–1.7M
12.
The copper-sensing transcription factor Mac1, the histone deacetylase Hst1, and nicotinic acid regulate de novo NAD+ biosynthesis in budding yeast
Christol James Theoga Raj, Trevor Croft, Padmaja Venkatakrishnan, Benjamin Groth, Gagandeep Dhugga, Timothy Cater, Su-Ju Lin
J Biol Chem. 2019 Apr 5; 294(14): 5562–5575. Published online 2019 Feb 13. doi: 10.1074/jbc.RA118.006987
PMCID:
PMC6462523
AbstractArticlePDF–2.3M
13.
N-terminal methionine excision of proteins creates tertiary destabilizing N-degrons of the Arg/N-end rule pathway
Kha The Nguyen, Jeong-Mok Kim, Sang-Eun Park, Cheol-Sang Hwang
J Biol Chem. 2019 Mar 22; 294(12): 4464–4476. Published online 2019 Jan 23. doi: 10.1074/jbc.RA118.006913
PMCID:
PMC6433082
AbstractArticlePDF–2.3M
14.
A functional link between NAD+ homeostasis and N-terminal protein acetylation in Saccharomyces cerevisiae
Trevor Croft, Christol James Theoga Raj, Michelle Salemi, Brett S. Phinney, Su-Ju Lin
J Biol Chem. 2018 Feb 23; 293(8): 2927–2938. Published online 2018 Jan 9. doi: 10.1074/jbc.M117.807214
PMCID:
PMC5827443
AbstractArticlePDF–1.7M
15.
Genome-Wide Mapping of Decay Factor–mRNA Interactions in Yeast Identifies Nutrient-Responsive Transcripts as Targets of the Deadenylase Ccr4
Jason E. Miller, Liye Zhang, Haoyang Jiang, Yunfei Li, B. Franklin Pugh, Joseph C. Reese
G3 (Bethesda) 2018 Jan; 8(1): 315–330. Published online 2017 Nov 20. doi: 10.1534/g3.117.300415
PMCID:
PMC5765359
AbstractArticlePDF–2.2M
16.
A global interaction network maps a wiring diagram of cellular function
Michael Costanzo, Benjamin VanderSluis, Elizabeth N. Koch, Anastasia Baryshnikova, Carles Pons, Guihong Tan, Wen Wang, Matej Usaj, Julia Hanchard, Susan D. Lee, Vicent Pelechano, Erin B. Styles, Maximilian Billmann, Jolanda van Leeuwen, Nydia van Dyk, Zhen-Yuan Lin, Elena Kuzmin, Justin Nelson, Jeff S. Piotrowski, Tharan Srikumar, Sondra Bahr, Yiqun Chen, Raamesh Deshpande, Christoph F. Kurat, Sheena C. Li, Zhijian Li, Mojca Mattiazzi Usaj, Hiroki Okada, Natasha Pascoe, Bryan-Joseph San Luis, Sara Sharifpoor, Emira Shuteriqi, Scott W. Simpkins, Jamie Snider, Harsha Garadi Suresh, Yizhao Tan, Hongwei Zhu, Noel Malod-Dognin, Vuk Janjic, Natasa Przulj, Olga G. Troyanskaya, Igor Stagljar, Tian Xia, Yoshikazu Ohya, Anne-Claude Gingras, Brian Raught, Michael Boutros, Lars M. Steinmetz, Claire L. Moore, Adam P. Rosebrock, Amy A. Caudy, Chad L. Myers, Brenda Andrews, Charles Boone
Science. Author manuscript; available in PMC 2017 Oct 30.
Published in final edited form as: Science. 2016 Sep 23; 353(6306): aaf1420. doi: 10.1126/science.aaf1420
PMCID:
PMC5661885
AbstractArticlePDF–2.6M
17.
The yeast protein kinase Sch9 adjusts V-ATPase assembly/disassembly to control pH homeostasis and longevity in response to glucose availability
Tobias Wilms, Erwin Swinnen, Elja Eskes, Laura Dolz-Edo, Alice Uwineza, Ruben Van Essche, Joëlle Rosseels, Piotr Zabrocki, Elisabetta Cameroni, Vanessa Franssens, Claudio De Virgilio, Gertien J. Smits, Joris Winderickx
PLoS Genet. 2017 Jun; 13(6): e1006835. Published online 2017 Jun 12. doi: 10.1371/journal.pgen.1006835
PMCID:
PMC5484544
AbstractArticlePDF–14M
18.
Functional Metabolomics Describes the Yeast Biosynthetic Regulome
Michael Mülleder, Enrica Calvani, Mohammad Tauqeer Alam, Richard Kangda Wang, Florian Eckerstorfer, Aleksej Zelezniak, Markus Ralser
Cell. 2016 Oct 6; 167(2): 553–565.e12. doi: 10.1016/j.cell.2016.09.007
PMCID:
PMC5055083
AbstractArticlePDF–3.9M
19.
Target selection by natural and redesigned PUF proteins
Douglas F. Porter, Yvonne Y. Koh, Brett VanVeller, Ronald T. Raines, Marvin Wickens
Proc Natl Acad Sci U S A. 2015 Dec 29; 112(52): 15868–15873. Published online 2015 Dec 14. doi: 10.1073/pnas.1508501112
PMCID:
PMC4703012
AbstractArticlePDF–1.3M
20.
Finding pathway-modulating genes from a novel Ontology Fingerprint-derived gene network
Tingting Qin, Nabil Matmati, Lam C. Tsoi, Bidyut K. Mohanty, Nan Gao, Jijun Tang, Andrew B. Lawson, Yusuf A. Hannun, W. Jim Zheng
Nucleic Acids Res. 2014 Oct 13; 42(18): e138. Published online 2014 Jul 25. doi: 10.1093/nar/gku678
PMCID:
PMC4191379
AbstractArticlePDF–2.2M

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