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Items: 1 to 20 of 48

1.
Protein interaction network revealed by quantitative proteomic analysis links TFIIB to multiple aspects of the transcription cycle
Michael J. O’Brien, Athar Ansari
Biochim Biophys Acta Proteins Proteom. Author manuscript; available in PMC 2024 Feb 16.
Published in final edited form as: Biochim Biophys Acta Proteins Proteom. 2024 Jan 1; 1872(1): 140968. Published online 2023 Oct 19. doi: 10.1016/j.bbapap.2023.140968
PMCID:
PMC10872477
AbstractArticlePDF–1.7M
2.
Structures illustrate step-by-step mitochondrial transcription initiation
Quinten Goovaerts, Jiayu Shen, Brent De Wijngaert, Urmimala Basu, Smita S. Patel, Kalyan Das
Nature. 2023; 622(7984): 872–879. Published online 2023 Oct 11. doi: 10.1038/s41586-023-06643-y
PMCID:
PMC10600007
AbstractArticlePDF–13M
3.
New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources
Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry
Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224
PMCID:
PMC9209811
AbstractArticlePDF–818K
4.
Assembly and Cryo-EM structure determination of yeast mitochondrial RNA polymerase initiation complex intermediates
Sergio E. Martinez, Anupam Singh, Brent De Wijngaert, Shemaila Sultana, Chhaya Dharia, Hans Vanbuel, Jiayu Shen, Daniel Vasilchuk, Smita S. Patel, Kalyan Das
STAR Protoc. 2021 Jun 18; 2(2): 100431. Published online 2021 Mar 31. doi: 10.1016/j.xpro.2021.100431
PMCID:
PMC8044712
AbstractArticlePDF–1.9M
5.
Cryo-EM structures reveal transcription initiation steps by yeast mitochondrial RNA polymerase
Brent De Wijngaert, Shemaila Sultana, Anupam Singh, Chhaya Dharia, Hans Vanbuel, Jiayu Shen, Daniel Vasilchuk, Sergio E. Martinez, Eaazhisai Kandiah, Smita S. Patel, Kalyan Das
Mol Cell. Author manuscript; available in PMC 2022 Jan 21.
Published in final edited form as: Mol Cell. 2021 Jan 21; 81(2): 268–280.e5. Published online 2020 Dec 4. doi: 10.1016/j.molcel.2020.11.016
PMCID:
PMC7855493
AbstractArticlePDF–2.9M
6.
The C-terminal tails of the mitochondrial transcription factors Mtf1 and TFB2M are part of an autoinhibitory mechanism that regulates DNA binding
Urmimala Basu, Nandini Mishra, Mohammed Farooqui, Jiayu Shen, Laura C. Johnson, Smita S. Patel
J Biol Chem. 2020 May 15; 295(20): 6823–6830. Published online 2020 Apr 2. doi: 10.1074/jbc.RA120.013338
PMCID:
PMC7242694
AbstractArticlePDF–1.5M
7.
The C-terminal tail of the yeast mitochondrial transcription factor Mtf1 coordinates template strand alignment, DNA scrunching and timely transition into elongation
Urmimala Basu, Seung-Won Lee, Aishwarya Deshpande, Jiayu Shen, Byeong-Kwon Sohn, Hayoon Cho, Hajin Kim, Smita S Patel
Nucleic Acids Res. 2020 Mar 18; 48(5): 2604–2620. Published online 2020 Jan 25. doi: 10.1093/nar/gkaa040
PMCID:
PMC7049685
AbstractArticlePDF–6.6M
8.
Effect of Sec61 interaction with Mpd1 on endoplasmic reticulum-associated degradation
Fabio Pereira, Mandy Rettel, Frank Stein, Mikhail M. Savitski, Ian Collinson, Karin Römisch
PLoS One. 2019; 14(1): e0211180. Published online 2019 Jan 25. doi: 10.1371/journal.pone.0211180
PMCID:
PMC6347170
AbstractArticlePDF–16M
9.
Genome-Wide Mapping of Decay Factor–mRNA Interactions in Yeast Identifies Nutrient-Responsive Transcripts as Targets of the Deadenylase Ccr4
Jason E. Miller, Liye Zhang, Haoyang Jiang, Yunfei Li, B. Franklin Pugh, Joseph C. Reese
G3 (Bethesda) 2018 Jan; 8(1): 315–330. Published online 2017 Nov 20. doi: 10.1534/g3.117.300415
PMCID:
PMC5765359
AbstractArticlePDF–2.2M
10.
Protein Moonlighting Revealed by Noncatalytic Phenotypes of Yeast Enzymes
Adriana Espinosa-Cantú, Diana Ascencio, Selene Herrera-Basurto, Jiewei Xu, Assen Roguev, Nevan J. Krogan, Alexander DeLuna
Genetics. 2018 Jan; 208(1): 419–431. Published online 2017 Nov 10. doi: 10.1534/genetics.117.300377
PMCID:
PMC5753873
AbstractArticlePDF–1.5M
11.
Architecture and dynamics of overlapped RNA regulatory networks
Christopher P. Lapointe, Melanie A. Preston, Daniel Wilinski, Harriet A.J. Saunders, Zachary T. Campbell, Marvin Wickens
RNA. 2017 Nov; 23(11): 1636–1647. doi: 10.1261/rna.062687.117
PMCID:
PMC5648032
AbstractArticlePDF–6.6M
12.
Exploring Genetic Suppression Interactions on a Global Scale
Jolanda van Leeuwen, Carles Pons, Joseph C. Mellor, Takafumi N. Yamaguchi, Helena Friesen, John Koschwanez, Mojca Mattiazzi Ušaj, Maria Pechlaner, Mehmet Takar, Matej Ušaj, Benjamin VanderSluis, Kerry Andrusiak, Pritpal Bansal, Anastasia Baryshnikova, Claire Boone, Jessica Cao, Atina Cote, Marinella Gebbia, Gene Horecka, Ira Horecka, Elena Kuzmin, Nicole Legro, Wendy Liang, Natascha van Lieshout, Margaret McNee, Bryan-Joseph San Luis, Fatemeh Shaeri, Ermira Shuteriqi, Song Sun, Lu Yang, Ji-Young Youn, Michael Yuen, Michael Costanzo, Anne-Claude Gingras, Patrick Aloy, Chris Oostenbrink, Andrew Murray, Todd R. Graham, Chad L. Myers, Brenda J. Andrews, Frederick P. Roth, Charles Boone
Science. Author manuscript; available in PMC 2017 Aug 19.
Published in final edited form as: Science. 2016 Nov 4; 354(6312): aag0839. doi: 10.1126/science.aag0839
PMCID:
PMC5562937
AbstractArticlePDF–2.5M
13.
The yeast protein kinase Sch9 adjusts V-ATPase assembly/disassembly to control pH homeostasis and longevity in response to glucose availability
Tobias Wilms, Erwin Swinnen, Elja Eskes, Laura Dolz-Edo, Alice Uwineza, Ruben Van Essche, Joëlle Rosseels, Piotr Zabrocki, Elisabetta Cameroni, Vanessa Franssens, Claudio De Virgilio, Gertien J. Smits, Joris Winderickx
PLoS Genet. 2017 Jun; 13(6): e1006835. Published online 2017 Jun 12. doi: 10.1371/journal.pgen.1006835
PMCID:
PMC5484544
AbstractArticlePDF–14M
14.
Functional Metabolomics Describes the Yeast Biosynthetic Regulome
Michael Mülleder, Enrica Calvani, Mohammad Tauqeer Alam, Richard Kangda Wang, Florian Eckerstorfer, Aleksej Zelezniak, Markus Ralser
Cell. 2016 Oct 6; 167(2): 553–565.e12. doi: 10.1016/j.cell.2016.09.007
PMCID:
PMC5055083
AbstractArticlePDF–3.9M
15.
The Yeast Mitochondrial RNA Polymerase and Transcription Factor Complex Catalyzes Efficient Priming of DNA Synthesis on Single-stranded DNA
Aparna Ramachandran, Divya Nandakumar, Aishwarya P. Deshpande, Thomas P. Lucas, Ramanagouda R-Bhojappa, Guo-Qing Tang, Kevin Raney, Y. Whitney Yin, Smita S. Patel
J Biol Chem. 2016 Aug 5; 291(32): 16828–16839. Published online 2016 Jun 16. doi: 10.1074/jbc.M116.740282
PMCID:
PMC4974394
AbstractArticlePDF–2.2M
16.
Protein-RNA networks revealed through covalent RNA marks
Christopher P. Lapointe, Daniel Wilinski, Harriet A. J. Saunders, Marvin Wickens
Nat Methods. Author manuscript; available in PMC 2016 May 18.
Published in final edited form as: Nat Methods. 2015 Dec; 12(12): 1163–1170. Published online 2015 Nov 2. doi: 10.1038/nmeth.3651
PMCID:
PMC4707952
AbstractArticlePDF–856K
17.
Saccharomyces cerevisiae Is Dependent on Vesicular Traffic between the Golgi Apparatus and the Vacuole When Inositolphosphorylceramide Synthase Aur1 Is Inactivated
Natalia S. Voynova, Carole Roubaty, Hector M. Vazquez, Shamroop K. Mallela, Christer S. Ejsing, Andreas Conzelmann
Eukaryot Cell. 2015 Dec; 14(12): 1203–1216. Prepublished online 2015 Oct 2. Published online 2015 Nov 30. doi: 10.1128/EC.00117-15
PMCID:
PMC4664882
AbstractArticlePDF–2.3M
18.
Integrated multi-omics analyses reveal the pleiotropic nature of the control of gene expression by Puf3p
Christopher J. Kershaw, Joseph L. Costello, David Talavera, William Rowe, Lydia M. Castelli, Paul F. G. Sims, Christopher M. Grant, Mark P. Ashe, Simon J. Hubbard, Graham D. Pavitt
Sci Rep. 2015; 5: 15518. Published online 2015 Oct 23. doi: 10.1038/srep15518
PMCID:
PMC4616039
AbstractArticlePDF–2.2M
19.
The thumb subdomain of yeast mitochondrial RNA polymerase is involved in processivity, transcript fidelity and mitochondrial transcription factor binding
Gilberto Velazquez, Rui Sousa, Luis G Brieba
RNA Biol. 2015 May; 12(5): 514–524. Published online 2015 Feb 5. doi: 10.1080/15476286.2015.1014283
PMCID:
PMC4615813
AbstractArticlePDF–1.1M
20.
ATP-binding cassette transporters and sterol O-acyltransferases interact at membrane microdomains to modulate sterol uptake and esterification
Sonia Gulati, Dina Balderes, Christine Kim, Zhongmin A. Guo, Lisa Wilcox, Estela Area-Gomez, Jamie Snider, Heimo Wolinski, Igor Stagljar, Juliana T. Granato, Kelly V. Ruggles, Joseph A. DeGiorgis, Sepp D. Kohlwein, Eric A. Schon, Stephen L. Sturley
FASEB J. 2015 Nov; 29(11): 4682–4694. Published online 2015 Jul 28. doi: 10.1096/fj.14-264796
PMCID:
PMC4608909
AbstractArticle

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