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Select item 108724771.

Protein interaction network revealed by quantitative proteomic analysis links TFIIB to multiple aspects of the transcription cycle

Michael J. O’Brien, Athar Ansari

Biochim Biophys Acta Proteins Proteom. Author manuscript; available in PMC 2024 Feb 16.

Published in final edited form as: Biochim Biophys Acta Proteins Proteom. 2024 Jan 1; 1872(1): 140968. Published online 2023 Oct 19. doi: 10.1016/j.bbapap.2023.140968

PMCID:: PMC10872477

Abstract Article PDF–1.7M

Select item 107001382.

The social and structural architecture of the yeast protein interactome

André C. Michaelis, Andreas-David Brunner, Maximilian Zwiebel, Florian Meier, Maximilian T. Strauss, Isabell Bludau, Matthias Mann

Nature. 2023; 624(7990): 192–200. Published online 2023 Nov 15. doi: 10.1038/s41586-023-06739-5

PMCID:: PMC10700138

Abstract Article PDF–20M

Select item 104046253.

Mutational and biophysical analyses reveal a TFIIIC binding region in the TFIIF-related Rpc53 subunit of RNA polymerase III

Arvind Chandra Shekhar, Wen-Jin Wu, Hung-Ta Chen

J Biol Chem. 2023 Jul; 299(7): 104859. Published online 2023 May 23. doi: 10.1016/j.jbc.2023.104859

Correction in:: J Biol Chem. 2023 Aug; 299(8): 105041.

PMCID:: PMC10404625

Abstract Article PDF–2.9M

Select item 96733524.

A proteomic screen of Ty1 integrase partners identifies the protein kinase CK2 as a regulator of Ty1 retrotransposition

Anastasia Barkova, Indranil Adhya, Christine Conesa, Amna Asif-Laidin, Amandine Bonnet, Elise Rabut, Carine Chagneau, Pascale Lesage, Joël Acker

Mob DNA. 2022; 13: 26. Published online 2022 Nov 18. doi: 10.1186/s13100-022-00284-0

PMCID:: PMC9673352

Abstract Article PDF–2.6M

Select item 92788585.

An integrated model for termination of RNA polymerase III transcription

Juanjuan Xie, Umberto Aiello, Yves Clement, Nouhou Haidara, Mathias Girbig, Jana Schmitzova, Vladimir Pena, Christoph W. Müller, Domenico Libri, Odil Porrua

Sci Adv. 2022 Jul; 8(28): eabm9875. Published online 2022 Jul 13. doi: 10.1126/sciadv.abm9875

PMCID:: PMC9278858

Abstract Article PDF–3.3M

Select item 92098116.

New data and collaborations at the Saccharomyces Genome Database: updated reference genome, alleles, and the Alliance of Genome Resources

Stacia R Engel, Edith D Wong, Robert S Nash, Suzi Aleksander, Micheal Alexander, Eric Douglass, Kalpana Karra, Stuart R Miyasato, Matt Simison, Marek S Skrzypek, Shuai Weng, J Michael Cherry

Genetics. 2022 Apr; 220(4): iyab224. Published online 2021 Dec 13. doi: 10.1093/genetics/iyab224

PMCID:: PMC9209811

Abstract Article PDF–818K

Select item 85710637.

Systems-level effects of allosteric perturbations to a model molecular switch

Tina Perica, Christopher J. P. Mathy, Jiewei Xu, Gwendolyn M. Jang, Yang Zhang, Robyn Kaake, Noah Ollikainen, Hannes Braberg, Danielle L. Swaney, David G. Lambright, Mark J. S. Kelly, Nevan J. Krogan, Tanja Kortemme

Nature. Author manuscript; available in PMC 2022 May 1.

Published in final edited form as: Nature. 2021 Nov; 599(7883): 152–157. Published online 2021 Oct 13. doi: 10.1038/s41586-021-03982-6

PMCID:: PMC8571063

Abstract Article PDF–2.7M

Select item 80919818.

Essential histone chaperones collaborate to regulate transcription and chromatin integrity

Olga Viktorovskaya, James Chuang, Dhawal Jain, Natalia I. Reim, Francheska López-Rivera, Magdalena Murawska, Dan Spatt, L. Stirling Churchman, Peter J. Park, Fred Winston

Genes Dev. 2021 May 1; 35(9-10): 698–712. doi: 10.1101/gad.348431.121

PMCID:: PMC8091981

Abstract Article PDF–6.4M

Select item 72731779.

Chaperone-Mediated Protein Disaggregation Triggers Proteolytic Clearance of Intra-nuclear Protein Inclusions

Fabian den Brave, Lucas V. Cairo, Chandhuru Jagadeesan, Carmen Ruger-Herreros, Axel Mogk, Bernd Bukau, Stefan Jentsch

Cell Rep. 2020 Jun 2; 31(9): 107680. Published online 2020 Jun 2. doi: 10.1016/j.celrep.2020.107680

PMCID:: PMC7273177

Abstract Article

Select item 612869210.

Defective RNA polymerase III is negatively regulated by the SUMO-Ubiquitin-Cdc48 pathway

Zheng Wang, Catherine Wu, Aaron Aslanian, John R Yates, III, Tony Hunter

eLife. 2018; 7: e35447. Published online 2018 Sep 7. doi: 10.7554/eLife.35447

PMCID:: PMC6128692

Abstract Article PDF–6.9M

Select item 594018011.

Network inference reveals novel connections in pathways regulating growth and defense in the yeast salt response

Matthew E. MacGilvray, Evgenia Shishkova, Deborah Chasman, Michael Place, Anthony Gitter, Joshua J. Coon, Audrey P. Gasch

PLoS Comput Biol. 2018 May; 13(5): e1006088. Published online 2018 May 8. doi: 10.1371/journal.pcbi.1006088

PMCID:: PMC5940180

Abstract Article PDF–3.0M

Select item 578902912.

Functions of the TFIIE-Related Tandem Winged-Helix Domain of Rpc34 in RNA Polymerase III Initiation and Elongation

Yi-Yu Wei, Hung-Ta Chen

Mol Cell Biol. 2018 Feb 15; 38(4): e00105-17. Prepublished online 2017 Nov 27. Published online 2018 Jan 29. doi: 10.1128/MCB.00105-17

PMCID:: PMC5789029

Abstract Article PDF–3.5M

Select item 566188513.

A global interaction network maps a wiring diagram of cellular function

Michael Costanzo, Benjamin VanderSluis, Elizabeth N. Koch, Anastasia Baryshnikova, Carles Pons, Guihong Tan, Wen Wang, Matej Usaj, Julia Hanchard, Susan D. Lee, Vicent Pelechano, Erin B. Styles, Maximilian Billmann, Jolanda van Leeuwen, Nydia van Dyk, Zhen-Yuan Lin, Elena Kuzmin, Justin Nelson, Jeff S. Piotrowski, Tharan Srikumar, Sondra Bahr, Yiqun Chen, Raamesh Deshpande, Christoph F. Kurat, Sheena C. Li, Zhijian Li, Mojca Mattiazzi Usaj, Hiroki Okada, Natasha Pascoe, Bryan-Joseph San Luis, Sara Sharifpoor, Emira Shuteriqi, Scott W. Simpkins, Jamie Snider, Harsha Garadi Suresh, Yizhao Tan, Hongwei Zhu, Noel Malod-Dognin, Vuk Janjic, Natasa Przulj, Olga G. Troyanskaya, Igor Stagljar, Tian Xia, Yoshikazu Ohya, Anne-Claude Gingras, Brian Raught, Michael Boutros, Lars M. Steinmetz, Claire L. Moore, Adam P. Rosebrock, Amy A. Caudy, Chad L. Myers, Brenda Andrews, Charles Boone

Science. Author manuscript; available in PMC 2017 Oct 30.

Published in final edited form as: Science. 2016 Sep 23; 353(6306): aaf1420. doi: 10.1126/science.aaf1420

PMCID:: PMC5661885

Abstract Article PDF–2.6M

Select item 529309514.

TORC1-dependent sumoylation of Rpc82 promotes RNA polymerase III assembly and activity

Pierre Chymkowitch, Aurélie Nguéa P, Håvard Aanes, Joseph Robertson, Arne Klungland, Jorrit M. Enserink

Proc Natl Acad Sci U S A. 2017 Jan 31; 114(5): 1039–1044. Published online 2017 Jan 17. doi: 10.1073/pnas.1615093114

PMCID:: PMC5293095

Abstract Article PDF–1.0M

Select item 468113215.

Molecular structures of unbound and transcribing RNA polymerase III

Niklas A. Hoffmann, Arjen J. Jakobi, Maria Moreno-Morcillo, Sebastian Glatt, Jan Kosinski, Wim J. H. Hagen, Carsten Sachse, Christoph W. Müller

Nature. Author manuscript; available in PMC 2016 May 25.

Published in final edited form as: Nature. 2015 Dec 10; 528(7581): 231–236. Published online 2015 Nov 25. doi: 10.1038/nature16143

PMCID:: PMC4681132

Abstract Article PDF–7.2M

Select item 450831716.

A Region of Bdp1 Necessary for Transcription Initiation That Is Located within the RNA Polymerase III Active Site Cleft

Hui-Lan Hu, Chih-Chien Wu, Jin-Cheng Lee, Hung-Ta Chen

Mol Cell Biol. 2015 Aug; 35(16): 2831–2840. Prepublished online 2015 Jun 8. Published online 2015 Jul 20. doi: 10.1128/MCB.00263-15

PMCID:: PMC4508317

Abstract Article PDF–2.1M

Select item 447547017.

Mechanism of transcription termination by RNA polymerase III utilizes a nontemplate-strand sequence-specific signal element

Aneeshkumar G. Arimbasseri, Richard J. Maraia

Mol Cell. Author manuscript; available in PMC 2016 Jun 18.

Published in final edited form as: Mol Cell. 2015 Jun 18; 58(6): 1124–1132. Published online 2015 May 7. doi: 10.1016/j.molcel.2015.04.002

PMCID:: PMC4475470

Abstract Article PDF–1.3M

Select item 403937118.

A global S. cerevisiae small ubiquitin-related modifier (SUMO) system interactome

Tharan Srikumar, Megan C Lewicki, Brian Raught

Mol Syst Biol. 2013; 9: 668. Published online 2013 May 28. doi: 10.1038/msb.2013.23

PMCID:: PMC4039371

Abstract Article PDF–2.5M

Select item 376030419.

Mechanism of Eukaryotic RNA polymerase III transcription termination

Soren Nielsen, Yulia Yuzenkova, Nikolay Zenkin

Science. Author manuscript; available in PMC 2013 Dec 28.

Published in final edited form as: Science. 2013 Jun 28; 340(6140): 1577–1580. doi: 10.1126/science.1237934

PMCID:: PMC3760304

Abstract Article PDF–1.6M

Select item 371081020.

Conformational dynamics control ubiquitin-deubiquitinase interactions and influence in vivo signaling

Aaron H. Phillips, Yingnan Zhang, Christian N. Cunningham, Lijuan Zhou, William F. Forrest, Peter S. Liu, Micah Steffek, James Lee, Christine Tam, Elizabeth Helgason, Jeremy M. Murray, Donald S. Kirkpatrick, Wayne J. Fairbrother, Jacob E. Corn

Proc Natl Acad Sci U S A. 2013 Jul 9; 110(28): 11379–11384. Published online 2013 Jun 25. doi: 10.1073/pnas.1302407110

PMCID:: PMC3710810

Abstract Article PDF–1.0M

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