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Select item 114662821.

Differential regulation of the proteome and phosphoproteome along the dorso-ventral axis of the early Drosophila embryo

Juan Manuel Gomez, Hendrik Nolte, Elisabeth Vogelsang, Bipasha Dey, Michiko Takeda, Girolamo Giudice, Miriam Faxel, Theresa Haunold, Alina Cepraga, Robert P Zinzen, Marcus Krüger, Evangelia Petsalaki, Yu-Chiun Wang, Maria Leptin

eLife. 2024; 13: e99263. Published online 2024 Sep 2. doi: 10.7554/eLife.99263

PMCID:: PMC11466282

Abstract Article PDF–11M

Select item 108477252.

Bone morphogenetic protein signaling: the pathway and its regulation

Takuya Akiyama, Laurel A Raftery, Kristi A Wharton

Genetics. 2024 Feb; 226(2): iyad200. Published online 2023 Dec 20. doi: 10.1093/genetics/iyad200

PMCID:: PMC10847725

Abstract Article PDF–6.8M

Select item 107633633.

Tissue-specific RNA Polymerase II promoter-proximal pause release and burst kinetics in a Drosophila embryonic patterning network

George Hunt, Roshan Vaid, Sergei Pirogov, Alexander Pfab, Christoph Ziegenhain, Rickard Sandberg, Johan Reimegård, Mattias Mannervik

Genome Biol. 2024; 25: 2. Published online 2024 Jan 2. doi: 10.1186/s13059-023-03135-0

PMCID:: PMC10763363

Abstract Article PDF–9.8M

Select item 100254494.

Continuous transcriptome analysis reveals novel patterns of early gene expression in Drosophila embryos

J. Eduardo Pérez-Mojica, Lennart Enders, Joseph Walsh, Kin H. Lau, Adelheid Lempradl

Cell Genom. 2023 Mar 8; 3(3): 100265. Published online 2023 Feb 15. doi: 10.1016/j.xgen.2023.100265

PMCID:: PMC10025449

Abstract Article PDF–2.6M

Select item 97625895.

The regulation of a pigmentation gene in the formation of complex color patterns in Drosophila abdomens

Komal K. B. Raja, Mujeeb O. Shittu, Peter M. E. Nouhan, Tessa E. Steenwinkel, Evan A. Bachman, Prajakta P. Kokate, Alexander McQueeney, Elizabeth A. Mundell, Alexandri A. Armentrout, Amber Nugent, Thomas Werner

PLoS One. 2022; 17(12): e0279061. Published online 2022 Dec 19. doi: 10.1371/journal.pone.0279061

PMCID:: PMC9762589

Abstract Article PDF–2.0M

Select item 96683346.

Genetic architecture of natural variation of cardiac performance from flies to humans

Saswati Saha, Lionel Spinelli, Jaime A Castro Mondragon, Anaïs Kervadec, Michaela Lynott, Laurent Kremmer, Laurence Roder, Sallouha Krifa, Magali Torres, Christine Brun, Georg Vogler, Rolf Bodmer, Alexandre R Colas, Karen Ocorr, Laurent Perrin

eLife. 2022; 11: e82459. Published online 2022 Nov 16. doi: 10.7554/eLife.82459

PMCID:: PMC9668334

Abstract Article PDF–4.8M

Select item 95871377.

The nested embryonic dorsal domains of BMP‐target genes are not scaled to size during the evolution of Drosophila species

Juan Sebastian Chahda, Priscilla Ambrosi, Claudia M. Mizutani

J Exp Zool B Mol Dev Evol. 2023 Mar; 340(2): 131–142. Published online 2022 Apr 22. doi: 10.1002/jez.b.23137

PMCID:: PMC9587137

Abstract Article PDF–4.1M

Select item 95746428.

How two extraembryonic epithelia became one: serosa and amnion features and functions of Drosophila's amnioserosa

Urs Schmidt-Ott, Chun Wai Kwan

Philos Trans R Soc Lond B Biol Sci. December 5, 2022; 377(1865): 20210265. Published online October 17, 2022. doi: 10.1098/rstb.2021.0265

PMCID:: PMC9574642

Abstract Article PDF–1.6M

Select item 81365019.

Suboptimal Intermediates Underlie Evolution of the Bicoid Homeodomain

Pinar Onal, Himari Imaya Gunasinghe, Kristaley Yui Umezawa, Michael Zheng, Jia Ling, Leen Azeez, Anecine Dalmeus, Tasmima Tazin, Stephen Small

Mol Biol Evol. 2021 Jun; 38(6): 2179–2190. Published online 2021 Feb 18. doi: 10.1093/molbev/msab051

PMCID:: PMC8136501

Abstract Article PDF–1.5M

Select item 783774310.

Versatile CRISPR/Cas9-mediated mosaic analysis by gRNA-induced crossing-over for unmodified genomes

Sarah E. Allen, Gabriel T. Koreman, Ankita Sarkar, Bei Wang, Mariana F. Wolfner, Chun Han

PLoS Biol. 2021 Jan; 19(1): e3001061. Published online 2021 Jan 14. doi: 10.1371/journal.pbio.3001061

PMCID:: PMC7837743

Abstract Article PDF–3.0M

Select item 747170411.

ZBED1/DREF: A transcription factor that regulates cell proliferation

Yarong Jin, Ruilei Li, Zhiwei Zhang, Jinjin Ren, Xin Song, Gong Zhang

Oncol Lett. 2020 Nov; 20(5): 137. Published online 2020 Aug 20. doi: 10.3892/ol.2020.11997

PMCID:: PMC7471704

Abstract Article PDF–749K

Select item 747160812.

Spotlight on the Granules (Grainyhead-Like Proteins) – From an Evolutionary Conserved Controller of Epithelial Trait to Pioneering the Chromatin Landscape

Vignesh Sundararajan, Qing You Pang, Mahesh Choolani, Ruby Yun-Ju Huang

Front Mol Biosci. 2020; 7: 213. Published online 2020 Aug 21. doi: 10.3389/fmolb.2020.00213

PMCID:: PMC7471608

Abstract Article PDF–2.8M

Select item 729604413.

Setting up for gastrulation: D. melanogaster: A gene regulatory program sets the stage

Angelike Stathopoulos, Susan Newcomb

Curr Top Dev Biol. Author manuscript; available in PMC 2021 Jan 1.

Published in final edited form as: Curr Top Dev Biol. 2020; 136: 3–32. Published online 2019 Dec 12. doi: 10.1016/bs.ctdb.2019.11.004

PMCID:: PMC7296044

Abstract Article PDF–1.6M

Select item 719826414.

Promoter-Proximal Chromatin Domain Insulator Protein BEAF Mediates Local and Long-Range Communication with a Transcription Factor and Directly Activates a Housekeeping Promoter in Drosophila

Yuankai Dong, S. V. Satya Prakash Avva, Mukesh Maharjan, Janice Jacobi, Craig M. Hart

Genetics. 2020 May; 215(1): 89–101. Published online 2020 Mar 16. doi: 10.1534/genetics.120.303144

PMCID:: PMC7198264

Abstract Article PDF–1.3M

Select item 716173615.

Rapid dynamics of signal-dependent transcriptional repression by Capicua

Shannon E. Keenan, Shelby A. Blythe, Robert A. Marmion, Nareg J.-V. Djabrayan, Eric F. Wieschaus, Stanislav Y. Shvartsman

Dev Cell. Author manuscript; available in PMC 2021 Mar 23.

Published in final edited form as: Dev Cell. 2020 Mar 23; 52(6): 794–801.e4. Published online 2020 Mar 5. doi: 10.1016/j.devcel.2020.02.004

PMCID:: PMC7161736

Abstract Article PDF–1.5M

Select item 648595616.

A Comprehensive Drosophila melanogaster Transcription Factor Interactome

Leila Shokri, Sachi Inukai, Antonina Hafner, Kathryn Weinand, Korneel Hens, Anastasia Vedenko, Stephen S. Gisselbrecht, Riccardo Dainese, Johannes Bischof, Edy Furger, Jean-Daniel Feuz, Konrad Basler, Bart Deplancke, Martha L. Bulyk

Cell Rep. Author manuscript; available in PMC 2019 Apr 26.

Published in final edited form as: Cell Rep. 2019 Apr 16; 27(3): 955–970.e7. doi: 10.1016/j.celrep.2019.03.071

PMCID:: PMC6485956

Abstract Article PDF–1.6M

Select item 621161717.

Spatially varying cis-regulatory divergence in Drosophila embryos elucidates cis-regulatory logic

Peter A. Combs, Hunter B. Fraser

PLoS Genet. 2018 Nov; 14(11): e1007631. Published online 2018 Nov 1. doi: 10.1371/journal.pgen.1007631

PMCID:: PMC6211617

Abstract Article PDF–2.1M

Select item 617726118.

Ancient mechanisms for the evolution of the bicoid homeodomain's function in fly development

Qinwen Liu, Pinar Onal, Rhea R Datta, Julia M Rogers, Urs Schmidt-Ott, Martha L Bulyk, Stephen Small, Joseph W Thornton

eLife. 2018; 7: e34594. Published online 2018 Oct 9. doi: 10.7554/eLife.34594

PMCID:: PMC6177261

Abstract Article PDF–6.3M

Select item 606784919.

Deciphering pleiotropy: How complex genes regulate behavior

Ina Anreiter, Marla B. Sokolowski

Commun Integr Biol. 2018; 11(2): 1–4. Published online 2018 Mar 23. doi: 10.1080/19420889.2018.1447743

PMCID:: PMC6067849

Abstract Article PDF–877K

Select item 582858620.

Capicua controls Toll/IL-1 signaling targets independently of RTK regulation

Aikaterini Papagianni, Marta Forés, Wanqing Shao, Shuonan He, Nina Koenecke, María José Andreu, Núria Samper, Ze’ev Paroush, Sergio González-Crespo, Julia Zeitlinger, Gerardo Jiménez

Proc Natl Acad Sci U S A. 2018 Feb 20; 115(8): 1807–1812. Published online 2018 Feb 5. doi: 10.1073/pnas.1713930115